arXiv subjects

Mathias Niepert

Publications and source records attributed to Mathias Niepert.

At least 91 records · Page 5Linked to original sources

arXiv2022

AnnIE: An Annotation Platform for Constructing Complete Open Information Extraction Benchmark

Open Information Extraction (OIE) is the task of extracting facts from sentences in the form of relations and their corresponding arguments in schema-free manner. Intrinsic performance of OIE systems is difficult to measure due to the incompleteness of existing OIE benchmarks: the ground truth extractions do not group all acceptable surface realizations of the same fact that can be extracted from a sentence. To measure performance of OIE systems more realistically, it is necessary to manually annotate complete facts (i.e., clusters of all acceptable surface realizations of the same fact) from input sentences. We propose AnnIE: an interactive annotation platform that facilitates such challenging annotation tasks and supports creation of complete fact-oriented OIE evaluation benchmarks. AnnIE is modular and flexible in order to support different use case scenarios (i.e., benchmarks covering different types of facts). We use AnnIE to build two complete OIE benchmarks: one with verb-mediated facts and another with facts encompassing named entities. Finally, we evaluate several OIE systems on our complete benchmarks created with AnnIE. Our results suggest that existing incomplete benchmarks are overly lenient, and that OIE systems are not as robust as previously reported. We publicly release AnnIE under non-restrictive license.

cs.CL↗

arXiv2021

Implicit MLE: Backpropagating Through Discrete Exponential Family Distributions

Combining discrete probability distributions and combinatorial optimization problems with neural network components has numerous applications but poses several challenges. We propose Implicit Maximum Likelihood Estimation (I-MLE), a framework for end-to-end learning of models combining discrete exponential family distributions and differentiable neural components. I-MLE is widely applicable as it only requires the ability to compute the most probable states and does not rely on smooth relaxations. The framework encompasses several approaches such as perturbation-based implicit differentiation and recent methods to differentiate through black-box combinatorial solvers. We introduce a novel class of noise distributions for approximating marginals via perturb-and-MAP. Moreover, we show that I-MLE simplifies to maximum likelihood estimation when used in some recently studied learning settings that involve combinatorial solvers. Experiments on several datasets suggest that I-MLE is competitive with and often outperforms existing approaches which rely on problem-specific relaxations.

cs.LG↗

arXiv2021

VEGN: Variant Effect Prediction with Graph Neural Networks

Genetic mutations can cause disease by disrupting normal gene function. Identifying the disease-causing mutations from millions of genetic variants within an individual patient is a challenging problem. Computational methods which can prioritize disease-causing mutations have, therefore, enormous applications. It is well-known that genes function through a complex regulatory network. However, existing variant effect prediction models only consider a variant in isolation. In contrast, we propose VEGN, which models variant effect prediction using a graph neural network (GNN) that operates on a heterogeneous graph with genes and variants. The graph is created by assigning variants to genes and connecting genes with an gene-gene interaction network. In this context, we explore an approach where a gene-gene graph is given and another where VEGN learns the gene-gene graph and therefore operates both on given and learnt edges. The graph neural network is trained to aggregate information between genes, and between genes and variants. Variants can exchange information via the genes they connect to. This approach improves the performance of existing state-of-the-art models.

cs.LG↗

arXiv2021

Answering Complex Queries in Knowledge Graphs with Bidirectional Sequence Encoders

Representation learning for knowledge graphs (KGs) has focused on the problem of answering simple link prediction queries. In this work we address the more ambitious challenge of predicting the answers of conjunctive queries with multiple missing entities. We propose Bi-Directional Query Embedding (BIQE), a method that embeds conjunctive queries with models based on bi-directional attention mechanisms. Contrary to prior work, bidirectional self-attention can capture interactions among all the elements of a query graph. We introduce a new dataset for predicting the answer of conjunctive query and conduct experiments that show BIQE significantly outperforming state of the art baselines.

cs.AI↗

arXiv2020

Explaining Neural Matrix Factorization with Gradient Rollback

Explaining the predictions of neural black-box models is an important problem, especially when such models are used in applications where user trust is crucial. Estimating the influence of training examples on a learned neural model's behavior allows us to identify training examples most responsible for a given prediction and, therefore, to faithfully explain the output of a black-box model. The most generally applicable existing method is based on influence functions, which scale poorly for larger sample sizes and models. We propose gradient rollback, a general approach for influence estimation, applicable to neural models where each parameter update step during gradient descent touches a smaller number of parameters, even if the overall number of parameters is large. Neural matrix factorization models trained with gradient descent are part of this model class. These models are popular and have found a wide range of applications in industry. Especially knowledge graph embedding methods, which belong to this class, are used extensively. We show that gradient rollback is highly efficient at both training and test time. Moreover, we show theoretically that the difference between gradient rollback's influence approximation and the true influence on a model's behavior is smaller than known bounds on the stability of stochastic gradient descent. This establishes that gradient rollback is robustly estimating example influence. We also conduct experiments which show that gradient rollback provides faithful explanations for knowledge base completion and recommender datasets.

cs.LG↗

arXiv2020

Uncertainty Estimation and Calibration with Finite-State Probabilistic RNNs

Uncertainty quantification is crucial for building reliable and trustable machine learning systems. We propose to estimate uncertainty in recurrent neural networks (RNNs) via stochastic discrete state transitions over recurrent timesteps. The uncertainty of the model can be quantified by running a prediction several times, each time sampling from the recurrent state transition distribution, leading to potentially different results if the model is uncertain. Alongside uncertainty quantification, our proposed method offers several advantages in different settings. The proposed method can (1) learn deterministic and probabilistic automata from data, (2) learn well-calibrated models on real-world classification tasks, (3) improve the performance of out-of-distribution detection, and (4) control the exploration-exploitation trade-off in reinforcement learning.

cs.LG↗

arXiv2020

Learning Discrete Structures for Graph Neural Networks

Graph neural networks (GNNs) are a popular class of machine learning models whose major advantage is their ability to incorporate a sparse and discrete dependency structure between data points. Unfortunately, GNNs can only be used when such a graph-structure is available. In practice, however, real-world graphs are often noisy and incomplete or might not be available at all. With this work, we propose to jointly learn the graph structure and the parameters of graph convolutional networks (GCNs) by approximately solving a bilevel program that learns a discrete probability distribution on the edges of the graph. This allows one to apply GCNs not only in scenarios where the given graph is incomplete or corrupted but also in those where a graph is not available. We conduct a series of experiments that analyze the behavior of the proposed method and demonstrate that it outperforms related methods by a significant margin.

cs.LG↗

arXiv2020

A Comparative Study of Distributional and Symbolic Paradigms for Relational Learning

Many real-world domains can be expressed as graphs and, more generally, as multi-relational knowledge graphs. Though reasoning and learning with knowledge graphs has traditionally been addressed by symbolic approaches, recent methods in (deep) representation learning has shown promising results for specialized tasks such as knowledge base completion. These approaches abandon the traditional symbolic paradigm by replacing symbols with vectors in Euclidean space. With few exceptions, symbolic and distributional approaches are explored in different communities and little is known about their respective strengths and weaknesses. In this work, we compare representation learning and relational learning on various relational classification and clustering tasks and analyse the complexity of the rules used implicitly by these approaches. Preliminary results reveal possible indicators that could help in choosing one approach over the other for particular knowledge graphs.

cs.AI↗

arXiv2019

Attending to Future Tokens For Bidirectional Sequence Generation

Neural sequence generation is typically performed token-by-token and left-to-right. Whenever a token is generated only previously produced tokens are taken into consideration. In contrast, for problems such as sequence classification, bidirectional attention, which takes both past and future tokens into consideration, has been shown to perform much better. We propose to make the sequence generation process bidirectional by employing special placeholder tokens. Treated as a node in a fully connected graph, a placeholder token can take past and future tokens into consideration when generating the actual output token. We verify the effectiveness of our approach experimentally on two conversational tasks where the proposed bidirectional model outperforms competitive baselines by a large margin.

stat.ML↗

arXiv2019

State-Regularized Recurrent Neural Networks

Recurrent neural networks are a widely used class of neural architectures. They have, however, two shortcomings. First, it is difficult to understand what exactly they learn. Second, they tend to work poorly on sequences requiring long-term memorization, despite having this capacity in principle. We aim to address both shortcomings with a class of recurrent networks that use a stochastic state transition mechanism between cell applications. This mechanism, which we term state-regularization, makes RNNs transition between a finite set of learnable states. We evaluate state-regularized RNNs on (1) regular languages for the purpose of automata extraction; (2) nonregular languages such as balanced parentheses, palindromes, and the copy task where external memory is required; and (3) real-word sequence learning tasks for sentiment analysis, visual object recognition, and language modeling. We show that state-regularization (a) simplifies the extraction of finite state automata modeling an RNN's state transition dynamics; (b) forces RNNs to operate more like automata with external memory and less like finite state machines; (c) makes RNNs have better interpretability and explainability.

cs.LG↗

arXiv2019

Answering Visual-Relational Queries in Web-Extracted Knowledge Graphs

A visual-relational knowledge graph (KG) is a multi-relational graph whose entities are associated with images. We explore novel machine learning approaches for answering visual-relational queries in web-extracted knowledge graphs. To this end, we have created ImageGraph, a KG with 1,330 relation types, 14,870 entities, and 829,931 images crawled from the web. With visual-relational KGs such as ImageGraph one can introduce novel probabilistic query types in which images are treated as first-class citizens. Both the prediction of relations between unseen images as well as multi-relational image retrieval can be expressed with specific families of visual-relational queries. We introduce novel combinations of convolutional networks and knowledge graph embedding methods to answer such queries. We also explore a zero-shot learning scenario where an image of an entirely new entity is linked with multiple relations to entities of an existing KG. The resulting multi-relational grounding of unseen entity images into a knowledge graph serves as a semantic entity representation. We conduct experiments to demonstrate that the proposed methods can answer these visual-relational queries efficiently and accurately.

cs.LG↗

arXiv2019

RecSys-DAN: Discriminative Adversarial Networks for Cross-Domain Recommender Systems

Data sparsity and data imbalance are practical and challenging issues in cross-domain recommender systems. This paper addresses those problems by leveraging the concepts which derive from representation learning, adversarial learning and transfer learning (particularly, domain adaptation). Although various transfer learning methods have shown promising performance in this context, our proposed novel method RecSys-DAN focuses on alleviating the cross-domain and within-domain data sparsity and data imbalance and learns transferable latent representations for users, items and their interactions. Different from existing approaches, the proposed method transfers the latent representations from a source domain to a target domain in an adversarial way. The mapping functions in the target domain are learned by playing a min-max game with an adversarial loss, aiming to generate domain indistinguishable representations for a discriminator. Four neural architectural instances of ResSys-DAN are proposed and explored. Empirical results on real-world Amazon data show that, even without using labeled data (i.e., ratings) in the target domain, RecSys-DAN achieves competitive performance as compared to the state-of-the-art supervised methods. More importantly, RecSys-DAN is highly flexible to both unimodal and multimodal scenarios, and thus it is more robust to the cold-start recommendation which is difficult for previous methods.

cs.IR↗

arXiv2019

MMKG: Multi-Modal Knowledge Graphs

We present MMKG, a collection of three knowledge graphs that contain both numerical features and (links to) images for all entities as well as entity alignments between pairs of KGs. Therefore, multi-relational link prediction and entity matching communities can benefit from this resource. We believe this data set has the potential to facilitate the development of novel multi-modal learning approaches for knowledge graphs.We validate the utility ofMMKG in the sameAs link prediction task with an extensive set of experiments. These experiments show that the task at hand benefits from learning of multiple feature types.

cs.AI↗

arXiv2018

Learning Short-Cut Connections for Object Counting

Object counting is an important task in computer vision due to its growing demand in applications such as traffic monitoring or surveillance. In this paper, we consider object counting as a learning problem of a joint feature extraction and pixel-wise object density estimation with Convolutional-Deconvolutional networks. We introduce a novel counting model, named Gated U-Net (GU-Net). Specifically, we propose to enrich the U-Net architecture with the concept of learnable short-cut connections. Standard short-cut connections are connections between layers in deep neural networks which skip at least one intermediate layer. Instead of simply setting short-cut connections, we propose to learn these connections from data. Therefore, our short-cuts can work as gating units, which optimize the flow of information between convolutional and deconvolutional layers in the U-Net architecture. We evaluate the introduced GU-Net architecture on three commonly used benchmark data sets for object counting. GU-Nets consistently outperform the base U-Net architecture, and achieve state-of-the-art performance.

cs.CV↗

arXiv2018

Learning Representations of Missing Data for Predicting Patient Outcomes

Extracting actionable insight from Electronic Health Records (EHRs) poses several challenges for traditional machine learning approaches. Patients are often missing data relative to each other; the data comes in a variety of modalities, such as multivariate time series, free text, and categorical demographic information; important relationships among patients can be difficult to detect; and many others. In this work, we propose a novel approach to address these first three challenges using a representation learning scheme based on message passing. We show that our proposed approach is competitive with or outperforms the state of the art for predicting in-hospital mortality (binary classification), the length of hospital visits (regression) and the discharge destination (multiclass classification).

cs.LG↗

arXiv2018

Knowledge Graph Completion to Predict Polypharmacy Side Effects

The polypharmacy side effect prediction problem considers cases in which two drugs taken individually do not result in a particular side effect; however, when the two drugs are taken in combination, the side effect manifests. In this work, we demonstrate that multi-relational knowledge graph completion achieves state-of-the-art results on the polypharmacy side effect prediction problem. Empirical results show that our approach is particularly effective when the protein targets of the drugs are well-characterized. In contrast to prior work, our approach provides more interpretable predictions and hypotheses for wet lab validation.

cs.DB↗

arXiv2018

Learning Sequence Encoders for Temporal Knowledge Graph Completion

Research on link prediction in knowledge graphs has mainly focused on static multi-relational data. In this work we consider temporal knowledge graphs where relations between entities may only hold for a time interval or a specific point in time. In line with previous work on static knowledge graphs, we propose to address this problem by learning latent entity and relation type representations. To incorporate temporal information, we utilize recurrent neural networks to learn time-aware representations of relation types which can be used in conjunction with existing latent factorization methods. The proposed approach is shown to be robust to common challenges in real-world KGs: the sparsity and heterogeneity of temporal expressions. Experiments show the benefits of our approach on four temporal KGs. The data sets are available under a permissive BSD-3 license 1.

cs.AI↗

arXiv2018

LRMM: Learning to Recommend with Missing Modalities

Multimodal learning has shown promising performance in content-based recommendation due to the auxiliary user and item information of multiple modalities such as text and images. However, the problem of incomplete and missing modality is rarely explored and most existing methods fail in learning a recommendation model with missing or corrupted modalities. In this paper, we propose LRMM, a novel framework that mitigates not only the problem of missing modalities but also more generally the cold-start problem of recommender systems. We propose modality dropout (m-drop) and a multimodal sequential autoencoder (m-auto) to learn multimodal representations for complementing and imputing missing modalities. Extensive experiments on real-world Amazon data show that LRMM achieves state-of-the-art performance on rating prediction tasks. More importantly, LRMM is more robust to previous methods in alleviating data-sparsity and the cold-start problem.

cs.IR↗