arXiv subjects

Mathias Rapacioli

Publications and source records attributed to Mathias Rapacioli.

7 recordsLinked to original sources

arXiv2021

IRMPD spectroscopy of a PAH cation using FELICE: The infrared spectrum and photodissociation of dibenzo[a,l]pyrene

We present the experimental InfraRed Multiple Photon Dissociation (IRMPD) spectrum and fragmentation mass spectrum of the irregular, cationic PAH dibenzo[a,l]pyrene (C$_{24}$H$_{14}^+$) in the 6-40 $μ$m / 250-1650 cm$^{-1}$ range. The use of the the Free-Electron Laser for IntraCavity Experiments (FELICE) enabled us to record its Far-InfraRed (FIR) spectrum for the first time. We aim to understand how irregularity affects the infrared spectrum and fragmentation chemistry of PAHs. Dibenzo[a,l]pyrene is an asymmetric, non-planar molecule, for which all vibrational modes are in principle IR-active. Calculated harmonic Density Function Theory (DFT) and anharmonic Density Functional based Tight Binding Molecular Dynamics (DFTB-MD) spectra show a large wealth of bands, which match the experiment well, but with a few differences. The periphery of the molecule contains several edge geometries, but out of all possible modes in the 11-14 $μ$m out-of-plane C-H bending region, only one band at 13.5 $μ$m is prominent. This fact and the richness of the C-C stretching range make irregular PAHs a possible contributor to D-class interstellar spectra. The fragmentation mass spectra reveal facile 2H-loss and no [2C, 2H]-loss, which is attributed to the sterically hindered, non-planar cove region, which could protect irregular PAHs from radiation damage.

physics.chem-ph↗

arXiv2021

Anharmonic Infrared Spectra of Thermally Excited Pyrene(C$_{16}$H$_{10}$): the combined view of DFT-based GVPT2 with AnharmonicCaOs and approximate DFT molecular dynamics with DemonNano

The study of the Aromatic Infrared Bands (AIBs) in astronomical environments has opened interesting spectroscopic questions on the effect of anharmonicity on the infrared (IR) spectrum of hot polycyclic aromatic hydrocarbons (PAHs) and related species in isolated conditions. The forthcoming James Webb Space Telescope will unveil unprecedented spatial and spectral details in the AIB spectrum; significant advancement is thus necessary now to model the infrared emission of PAHs, their presumed carriers, with enough detail to exploit the information content of the AIBs. This requires including anharmonicity in such models, and to do so systematically for all species included, requiring a difficult compromise between accuracy and efficiency. We performed a benchmark study to compare the performances of two methods in calculating anharmonic spectra, comparing them to available experimental data. One is a full quantum method, AnharmoniCaOs, relying on an ab initio potential, and the other relies on Molecular Dynamics simulations using a Density Functional based Tight Binding potential. The first one is found to be very accurate and detailed, but it becomes computationally very expensive for increasing temperature; the second is faster and can be used for arbitrarily high temperatures, but is less accurate. Still, its results can be used to model the evolution with temperature of isolated bands. We propose a new recipe to model anharmonic AIB emission using minimal assumptions on the general behaviour of band positions and widths with temperature, which can be defined by a small number of empirical parameters. Modelling accuracy will depend critically on these empirical parameters, allowing for an incremental improvement in model results, as better estimates become gradually available.

astro-ph.GA↗

arXiv2021

Hydrogenation of C$_{24}$ carbon clusters : structural diversity and energetic properties

This work aims at exploring the potential energy surfaces of C$_{24}$H$_n${n=0,6,12,18,24} up to 20-25\,eV using the genetic algorithm in combination with the density functional based tight binding (DFTB) potential. The structural diversity of the non fragmented structures was analysed using order parameters which were chosen as the number of 5 or 6 carbon rings and the asphericity constant $β$. The most abundant and lowest energy population was found to correspond to a flakes population, constituted of isomers of variable shapes possessing a large number of 5 or 6-carbon rings. This population is characterized by a larger number of spherical isomers when $n_H/n_C$ increases. Simultaneously, the fraction of the pretzels population constituted of spherical isomers possessing fewer 5 or 6 carbon ring cycles increases. For all hydrogenation rates, the fraction of cages population remains extremely minor while the branched population is the highest energy population for all $n_H/n_C$ ratios. For all C$_{24}$H$_n${n=0,6,12,18,24} clusters, a detailed study of the evolution of the carbon ring size distribution as a function of energy clearly shows that the stability is correlated to the number of 6-carbon rings. A similar study for hybridization $sp^n$ (n=1-3) shows that the number of $sp^1$ carbon atoms increases with energy while globally the number of $sp^3$ carbon atoms increases with $n_H/n_C$. The average values of the ionization potentials of all populations were found to decrease when $n_H/n_C$ increases, ranging from 7.9\,eV down to 6.4\,eV that we correlated to carbon atoms hybridization $sp^n$ (n=1-3). These results are of astrophysical interest as they should be taken into account in astrophysical models especially regarding the role of carbonaceous species in the gas ionization.

physics.chem-ph↗

arXiv2017

Melting of the Au20 gold cluster : does charge matter?

We investigate the dependence upon charge of the heat capacities of the magic gold cluster Au20 obtained from density functional based tight binding theory within parallel tempering molecular dynamics and the multiple histogram method. The melting temperatures, determined from heat capacity curves, are found to be 1102 K for neutral Au20 and only 866 and 826 K for Au{20} cations and anions respectively. The present work proves that a single charge quantitatively affects the thermal properties of the twentymer even for a global property such as melting.

physics.chem-ph↗

arXiv2017

PAH chemistry at eV internal energies. 2. Ring alteration and dissociation

Recognized as important interstellar constituents, polycyclic aromatic hydrocarbons (PAHs) have been intensively studied in astrochemistry and their spectroscopy, thermodynamics, dynamics, and fragmentations are now amply documented. There exists typical alternatives to the ground-state regular planar structures of PAHs, as long as they bear internal energies in the range 1-10 eV. Resulting from intramolecular rearrangements, such high-lying minima on the potential- energy surfaces should be taken into consideration in the studies of PAH processing in astrophysical conditions. Resting upon DFT calculations mainly performed on two emblematic PAH representatives, coronene and pyrene, in their neutral and mono and multi-cationic states, this second survey addresses the following alternatives: (1) opened forms containing ethynyl or 2- butynyl groups, (2) vinylidene isomers, in which phenanthrene patterns are reorganized into dibenzofulvene ones, (3) twisted forms, where external CH=CH bonds can be partly twisted, and (4) bicyclobutane forms, in which the latter are integrated in saturated bicyclic forms. A few scenarios for elimination of fragments H, H2, C2H2 and C2H4 are explored. As far as possible, familiar concepts of organic chemistry, such as aromaticity or Clar's rules, are invoked for interpretations.

physics.chem-ph↗

arXiv2017

PAH chemistry at eV internal energies. 1. H-shifted isomers

The PAH family of organic compounds (polycyclic aromatic hydrocarbons), involved in several fields of chemistry, has received particular attention in astrochemistry, where their vibrational spectroscopy, thermodynamic, dynamic, and fragmentation properties are now abundantly documented. This survey aims at drawing trends for low spin-multiplicity surfaces of PAHs bearing internal energies in the range 1-10 eV. It addresses some typical alternatives to the ground-state regular structures of PAHs, making explicit possible intramolecular rearrangements leading to high-lying minima. These isomerisations should be taken into consideration when addressing PAH processing in astrophysical conditions. The first part of this double-entry study focuses on the hydrogen-shifted forms, which bear both a carbene center and a saturated carbon. It rests upon DFT calculations mainly performed on two emblematic PAH representatives, coronene and pyrene, in their neutral and mono and multi-cationic states. Systematically searched for in neutral species, these H-shifted minima are lying 4-5 eV above the regular all-conjugated forms, and are separated by barriers of about one eV. General hydrogen-shifting is found to be easier for cationic species as the relative energies of their H-shifted minima are 1-1.5 eV lower than those for neutral species. As much as possible, classical knowledge and concepts of organic chemistry such as aromaticity and Clar's rules are invoked for result interpretation.

physics.chem-ph↗

arXiv2014

A Sparse SCF algorithm and its parallel implementation: Application to DFTB

We present an algorithm and its parallel implementation for solving a self consistent problem as encountered in Hartree Fock or Density Functional Theory. The algorithm takes advantage of the sparsity of matrices through the use of local molecular orbitals. The implementation allows to exploit efficiently modern symmetric multiprocessing (SMP) computer architectures. As a first application, the algorithm is used within the density functional based tight binding method, for which most of the computational time is spent in the linear algebra routines (diagonalization of the Fock/Kohn-Sham matrix). We show that with this algorithm (i) single point calculations on very large systems (millions of atoms) can be performed on large SMP machines (ii) calculations involving intermediate size systems (1~000--100~000 atoms) are also strongly accelerated and can run efficiently on standard servers (iii) the error on the total energy due to the use of a cut-off in the molecular orbital coefficients can be controlled such that it remains smaller than the SCF convergence criterion.

physics.chem-ph↗