arXiv subjects

Mathilde Bouvel

Publications and source records attributed to Mathilde Bouvel.

43 records · Page 3Linked to original sources

arXiv2011

Deciding the finiteness of the number of simple permutations contained in a wreath-closed class is polynomial

We present an algorithm running in time O(n ln n) which decides if a wreath-closed permutation class Av(B) given by its finite basis B contains a finite number of simple permutations. The method we use is based on an article of Brignall, Ruskuc and Vatter which presents a decision procedure (of high complexity) for solving this question, without the assumption that Av(B) is wreath-closed. Using combinatorial, algorithmic and language theoretic arguments together with one of our previous results on pin-permutations, we are able to transform the problem into a co-finiteness problem in a complete deterministic automaton.

cs.DS↗

arXiv2010

On the enumeration of d-minimal permutations

We suggest an approach for the enumeration of minimal permutations having d descents which uses skew Young tableaux. We succeed in finding a general expression for the number of such permutations in terms of (several) sums of determinants. We then generalize the class of skew Young tableaux under consideration; this allows in particular to discover some presumably new results concerning Eulerian numbers.

math.CO↗

arXiv2009

Average-case analysis of perfect sorting by reversals

A sequence of reversals that takes a signed permutation to the identity is perfect if at no step a common interval is broken. Determining a parsimonious perfect sequence of reversals that sorts a signed permutation is NP-hard. Here we show that, despite this worst-case analysis, with probability one, sorting can be done in polynomial time. Further, we find asymptotic expressions for the average length and number of reversals in commuting permutations, an interesting sub-class of signed permutations.

math.CO↗

arXiv2008

Posets and Permutations in the Duplication-Loss Model: Minimal Permutations with d Descents

In this paper, we are interested in the combinatorial analysis of the whole genome duplication - random loss model of genome rearrangement initiated in a paper of Chaudhuri, Chen, Mihaescu, and Rao in SODA 2006 and continued by Bouvel and Rossin in 2007. In this model, genomes composed of n genes are modeled by permutations of the set of integers [1..n], that can evolve through duplication-loss steps. It was previously shown that the class of permutations obtained in this model after a given number p of steps is a class of pattern-avoiding permutations of finite basis. The excluded patterns were described as the minimal permutations with d=2^p descents, minimal being intended in the sense of the pattern-involvement relation on permutations. Here, we give a local and simpler characterization of the set B_d of minimal permutations with d descents. We also provide a more detailed analysis - characterization, bijection and enumeration - of two particular subsets of B_d, namely the patterns in B_d of size d+2 and 2d.

math.CO↗

arXiv2008

A variant of the tandem duplication - random loss model of genome rearrangement

In Soda'06, Chaudhuri, Chen, Mihaescu and Rao study algorithmic properties of the tandem duplication - random loss model of genome rearrangement, well-known in evolutionary biology. In their model, the cost of one step of duplication-loss of width k is $α^k$ for $α=1$ or $α>=2 $. In this paper, we study a variant of this model, where the cost of one step of width $k$ is 1 if $k <= K$ and $\infty$ if $k > K$, for any value of the parameter $K in N$. We first show that permutations obtained after $p$ steps of width $K$ define classes of pattern-avoiding permutations. We also compute the numbers of duplication-loss steps of width $K$ necessary and sufficient to obtain any permutation of $S_n$, in the worst case and on average. In this second part, we may also consider the case $K=K(n)$, a function of the size $n$ of the permutation on which the duplication-loss operations are performed.

math.CO↗

arXiv2007

Longest Common Separable Pattern between Permutations

In this article, we study the problem of finding the longest common separable pattern between several permutations. We give a polynomial-time algorithm when the number of input permutations is fixed and show that the problem is NP-hard for an arbitrary number of input permutations even if these permutations are separable. On the other hand, we show that the NP-hard problem of finding the longest common pattern between two permutations cannot be approximated better than within a ratio of $sqrt{Opt}$ (where $Opt$ is the size of an optimal solution) when taking common patterns belonging to pattern-avoiding classes of permutations.

math.CO↗

arXiv2006

Longest Common Pattern between two Permutations

In this paper, we give a polynomial (O(n^8)) algorithm for finding a longest common pattern between two permutations of size n given that one is separable. We also give an algorithm for general permutations whose complexity depends on the length of the longest simple permutation involved in one of our permutations.

math.CO↗