SearcharxivSearch

arXiv subjects

Matteo Martin

Publications and source records attributed to Matteo Martin.

2 recordsLinked to original sources

Dissecting emerging slow rhythms in delay-coupled neural oscillators

Synaptic transmission delays are ubiquitous in neural circuits and can alter the dynamical repertoire of coupled oscillators quantitatively and qualitatively. Here, we demonstrate that delayed coupling in inhibitory networks introduces an effective slow-fast structure in the phase-difference dynamics, generating low-frequency components that are not due to intrinsic cellular properties, and we show that this behavior is not specific to a particular model structure. The origin of this generic phenomenon is analyzed by numerical continuation and bifurcation analysis, which provides a systematic approach to find such delay-induced slow modulating rhythms. We employ phase reduction based on phase response curves to derive a phase-difference model with delay for mutually inhibitory coupled oscillators, where the individual units are given by the FitzHugh-Nagumo model, the Morris-Lecar model, or a next-generation neural mass model derived from quadratic integrate-and-fire neurons. We use phase planes to study multistability and limit cycles, which correspond to slow modulation of fast oscillations in the full model. Treating the synaptic delay as a bifurcation parameter, we apply numerical continuation to construct delay-dependent bifurcation diagrams. The analysis reveals Hopf, heteroclinic, and saddle-node-of-periodics bifurcations that cause and organize slow rhythmic behavior. Our analysis provides a systematic approach to the search for limit cycles in phase-reduction models corresponding to delay-induced slow rhythms in the original model.

nlin.CD

XPPLORE: Import, visualize, and analyze XPPAUT data in MATLAB

The analysis of ordinary differential equation (ODE) dynamical systems, particularly in applied disciplines such as mathematical biology and neuroscience, often requires flexible computational workflows tailored to model-specific questions. XPPAUT is a widely used tool combining numerical integration and continuation methods. Various XPPAUT toolboxes have emerged to customize analyses, however, they typically rely on summary '.dat' files and cannot parse the more informative '.auto' files, which contain detailed continuation data, e.g. periodic orbits and boundary value problem solutions. We present XPPLORE, a user-friendly and structured MATLAB toolbox overcoming this limitation through the handling of '.auto' files. This free software enables post-processing of continuation results, facilitates analyses such as manifold reconstruction and averaging, and it supports the creation of high-quality visualizations suitable for scientific publications. This paper introduces the core data structures of XPPLORE and demonstrates the software's exploration capabilities, highlighting its value as a customizable and accessible extension for researchers working with ODE-based dynamical systems.

math.DS