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Matthew Harkey

Publications and source records attributed to Matthew Harkey.

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MonoUNet: A Robust Tiny Neural Network for Automated Knee Cartilage Segmentation on Point-of-Care Ultrasound Devices

Objective: To develop a robust and compact deep learning model for automated knee cartilage segmentation on point-of-care ultrasound (POCUS) devices. Methods: We propose MonoUNet, a novel, highly compact segmentation model consisting of (i) an aggressively reduced U-Net backbone, (ii) a trainable monogenic block that extracts multi-scale local phase features from the input, and (iii) a gating mechanism that injects these features into the encoder stages to reduce sensitivity to variations in ultrasound image appearance. MonoUNet segmentation performance was evaluated on a multi-site, multi-device knee cartilage ultrasound dataset using Dice score and mean average surface distance (MASD). Agreement between MonoUNet and manual cartilage outcomes (thickness and echo intensity) was assessed using Bland-Altman analysis with 95% limits of agreement, and reliability was assessed using intraclass correlation coefficient (ICC$_{2,k}$). Results: Overall, MonoUNet outperformed existing lightweight segmentation models, with average Dice scores ranging from 92.62% to 94.82% and MASD values between 0.133 mm and 0.254 mm. MonoUNet reduces the number of parameters by 10x--700x and computational cost by 14x--2000x relative to existing lightweight models. MonoUNet cartilage outcomes showed excellent reliability and agreement with the manual outcomes: intraclass correlation coefficients (ICC$_{2,k})$=0.96 and bias=2.00% (0.047 mm) for average thickness, and ICC$_{2,k}$=0.99 and bias=0.80% (0.328 a.u.) for echo intensity. Conclusion: Incorporating trainable local phase features improves the robustness of highly compact neural networks for knee cartilage segmentation across varying acquisition settings and could support scalable ultrasound-based assessment and monitoring of knee osteoarthritis using POCUS devices. The code is publicly available at https://github.com/alvinkimbowa/monounet.

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Mono2D: A Trainable Monogenic Layer for Robust Knee Cartilage Segmentation on Out-of-Distribution 2D Ultrasound Data

Automated knee cartilage segmentation using point-of-care ultrasound devices and deep-learning networks has the potential to enhance the management of knee osteoarthritis. However, segmentation algorithms often struggle with domain shifts caused by variations in ultrasound devices and acquisition parameters, limiting their generalizability. In this paper, we propose Mono2D, a monogenic layer that extracts multi-scale, contrast- and intensity-invariant local phase features using trainable bandpass quadrature filters. This layer mitigates domain shifts, improving generalization to out-of-distribution domains. Mono2D is integrated before the first layer of a segmentation network, and its parameters jointly trained alongside the network's parameters. We evaluated Mono2D on a multi-domain 2D ultrasound knee cartilage dataset for single-source domain generalization (SSDG). Our results demonstrate that Mono2D outperforms other SSDG methods in terms of Dice score and mean average surface distance. To further assess its generalizability, we evaluate Mono2D on a multi-site prostate MRI dataset, where it continues to outperform other SSDG methods, highlighting its potential to improve domain generalization in medical imaging. Nevertheless, further evaluation on diverse datasets is still necessary to assess its clinical utility.

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