arXiv subjects

Matthew Johnson

Publications and source records attributed to Matthew Johnson.

At least 55 records · Page 3Linked to original sources

arXiv2019

Towards Automatic Screening of Typical and Atypical Behaviors in Children With Autism

This paper has been withdrawn by the authors due to insufficient or definition error(s) in the ethics approval protocol. Autism spectrum disorders (ASD) impact the cognitive, social, communicative and behavioral abilities of an individual. The development of new clinical decision support systems is of importance in reducing the delay between presentation of symptoms and an accurate diagnosis. In this work, we contribute a new database consisting of video clips of typical (normal) and atypical (such as hand flapping, spinning or rocking) behaviors, displayed in natural settings, which have been collected from the YouTube video website. We propose a preliminary non-intrusive approach based on skeleton keypoint identification using pretrained deep neural networks on human body video clips to extract features and perform body movement analysis that differentiates typical and atypical behaviors of children. Experimental results on the newly contributed database show that our platform performs best with decision tree as the classifier when compared to other popular methodologies and offers a baseline against which alternate approaches may developed and tested.

cs.CV↗

arXiv2019

Graph Isomorphism for $(H_1,H_2)$-free Graphs: An Almost Complete Dichotomy

We resolve the computational complexity of Graph Isomorphism for classes of graphs characterized by two forbidden induced subgraphs $H_1$ and $H_2$ for all but six pairs $(H_1,H_2)$. Schweitzer had previously shown that the number of open cases was finite, but without specifying the open cases. Grohe and Schweitzer proved that Graph Isomorphism is polynomial-time solvable on graph classes of bounded clique-width. Our work combines known results such as these with new results. By exploiting a relationship between Graph Isomorphism and clique-width, we simultaneously reduce the number of open cases for boundedness of clique-width for $(H_1,H_2)$-free graphs to five.

cs.DM↗

arXiv2019

On Cycle Transversals and Their Connected Variants in the Absence of a Small Linear Forest

A graph is $H$-free if it contains no induced subgraph isomorphic to $H$. We prove new complexity results for the two classical cycle transversal problems Feedback Vertex Set and Odd Cycle Transversal by showing that they can be solved in polynomial time on $(sP_1+P_3)$-free graphs for every integer $s\geq 1$. We show the same result for the variants Connected Feedback Vertex Set and Connected Odd Cycle Transversal. We also prove that the latter two problems are polynomial-time solvable on cographs; this was already known for Feedback Vertex Set and Odd Cycle Transversal. We complement these results by proving that Odd Cycle Transversal and Connected Odd Cycle Transversal are NP-complete on $(P_2+P_5,P_6)$-free graphs.

cs.DS↗

arXiv2019

CMB-HD: An Ultra-Deep, High-Resolution Millimeter-Wave Survey Over Half the Sky

A millimeter-wave survey over half the sky, that spans frequencies in the range of 30 to 350 GHz, and that is both an order of magnitude deeper and of higher-resolution than currently funded surveys would yield an enormous gain in understanding of both fundamental physics and astrophysics. By providing such a deep, high-resolution millimeter-wave survey (about 0.5 uK-arcmin noise and 15 arcsecond resolution at 150 GHz), CMB-HD will enable major advances. It will allow 1) the use of gravitational lensing of the primordial microwave background to map the distribution of matter on small scales (k~10/hMpc), which probes dark matter particle properties. It will also allow 2) measurements of the thermal and kinetic Sunyaev-Zel'dovich effects on small scales to map the gas density and gas pressure profiles of halos over a wide field, which probes galaxy evolution and cluster astrophysics. In addition, CMB-HD would allow us to cross critical thresholds in fundamental physics: 3) ruling out or detecting any new, light (< 0.1eV), thermal particles, which could potentially be the dark matter, and 4) testing a wide class of multi-field models that could explain an epoch of inflation in the early Universe. Such a survey would also 5) monitor the transient sky by mapping the full observing region every few days, which opens a new window on gamma-ray bursts, novae, fast radio bursts, and variable active galactic nuclei. Moreover, CMB-HD would 6) provide a census of planets, dwarf planets, and asteroids in the outer Solar System, and 7) enable the detection of exo-Oort clouds around other solar systems, shedding light on planet formation. CMB-HD will deliver this survey in 5 years of observing half the sky, using two new 30-meter-class off-axis cross-Dragone telescopes to be located at Cerro Toco in the Atacama Desert. The telescopes will field about 2.4 million detectors (600,000 pixels) in total.

astro-ph.CO↗

arXiv2019

Filling the Complexity Gaps for Colouring Planar and Bounded Degree Graphs

A colouring of a graph $G=(V,E)$ is a function $c: V\rightarrow\{1,2,\ldots \}$ such that $c(u)\neq c(v)$ for every $uv\in E$. A $k$-regular list assignment of $G$ is a function $L$ with domain $V$ such that for every $u\in V$, $L(u)$ is a subset of $\{1, 2, \dots\}$ of size $k$. A colouring $c$ of $G$ respects a $k$-regular list assignment $L$ of $G$ if $c(u)\in L(u)$ for every $u\in V$. A graph $G$ is $k$-choosable if for every $k$-regular list assignment $L$ of $G$, there exists a colouring of $G$ that respects $L$. We may also ask if for a given $k$-regular list assignment $L$ of a given graph $G$, there exists a colouring of $G$ that respects $L$. This yields the $k$-Regular List Colouring problem. For $k\in \{3,4\}$ we determine a family of classes ${\cal G}$ of planar graphs, such that either $k$-Regular List Colouring is NP-complete for instances $(G,L)$ with $G\in {\cal G}$, or every $G\in {\cal G}$ is $k$-choosable. By using known examples of non-$3$-choosable and non-$4$-choosable graphs, this enables us to classify the complexity of $k$-Regular List Colouring restricted to planar graphs, planar bipartite graphs, planar triangle-free graphs and to planar graphs with no $4$-cycles and no $5$-cycles. We also classify the complexity of $k$-Regular List Colouring and a number of related colouring problems for graphs with bounded maximum degree.

cs.DS↗

arXiv2019

Clique-Width for Hereditary Graph Classes

Clique-width is a well-studied graph parameter owing to its use in understanding algorithmic tractability: if the clique-width of a graph class ${\cal G}$ is bounded by a constant, a wide range of problems that are NP-complete in general can be shown to be polynomial-time solvable on ${\cal G}$. For this reason, the boundedness or unboundedness of clique-width has been investigated and determined for many graph classes. We survey these results for hereditary graph classes, which are the graph classes closed under taking induced subgraphs. We then discuss the algorithmic consequences of these results, in particular for the Colouring and Graph Isomorphism problems. We also explain a possible strong connection between results on boundedness of clique-width and on well-quasi-orderability by the induced subgraph relation for hereditary graph classes.

math.CO↗

arXiv2018

Simple, Distributed, and Accelerated Probabilistic Programming

We describe a simple, low-level approach for embedding probabilistic programming in a deep learning ecosystem. In particular, we distill probabilistic programming down to a single abstraction---the random variable. Our lightweight implementation in TensorFlow enables numerous applications: a model-parallel variational auto-encoder (VAE) with 2nd-generation tensor processing units (TPUv2s); a data-parallel autoregressive model (Image Transformer) with TPUv2s; and multi-GPU No-U-Turn Sampler (NUTS). For both a state-of-the-art VAE on 64x64 ImageNet and Image Transformer on 256x256 CelebA-HQ, our approach achieves an optimal linear speedup from 1 to 256 TPUv2 chips. With NUTS, we see a 100x speedup on GPUs over Stan and 37x over PyMC3.

stat.ML↗

arXiv2018

Finding a Small Number of Colourful Components

A partition $(V_1,\ldots,V_k)$ of the vertex set of a graph $G$ with a (not necessarily proper) colouring $c$ is colourful if no two vertices in any $V_i$ have the same colour and every set $V_i$ induces a connected graph. The COLOURFUL PARTITION problem is to decide whether a coloured graph $(G,c)$ has a colourful partition of size at most $k$. This problem is closely related to the COLOURFUL COMPONENTS problem, which is to decide whether a graph can be modified into a graph whose connected components form a colourful partition by deleting at most $p$ edges. Nevertheless we show that COLOURFUL PARTITION and COLOURFUL COMPONENTS may have different complexities for restricted instances. We tighten known NP-hardness results for both problems and in addition we prove new hardness and tractability results for COLOURFUL PARTITION. Using these results we complete our paper with a thorough parameterized study of COLOURFUL PARTITION.

cs.DS↗

arXiv2018

Connected Vertex Cover for $(sP_1+P_5)$-Free Graphs

The Connected Vertex Cover problem is to decide if a graph G has a vertex cover of size at most $k$ that induces a connected subgraph of $G$. This is a well-studied problem, known to be NP-complete for restricted graph classes, and, in particular, for $H$-free graphs if $H$ is not a linear forest (a graph is $H$-free if it does not contain $H$ as an induced subgraph). It is easy to see that Connected Vertex Cover is polynomial-time solvable for $P_4$-free graphs. We continue the search for tractable graph classes: we prove that it is also polynomial-time solvable for $(sP_1+P_5)$-free graphs for every integer $s\geq 0$.

cs.DS↗

arXiv2018

Capturing Structure Implicitly from Time-Series having Limited Data

Scientific fields such as insider-threat detection and highway-safety planning often lack sufficient amounts of time-series data to estimate statistical models for the purpose of scientific discovery. Moreover, the available limited data are quite noisy. This presents a major challenge when estimating time-series models that are robust to overfitting and have well-calibrated uncertainty estimates. Most of the current literature in these fields involve visualizing the time-series for noticeable structure and hard coding them into pre-specified parametric functions. This approach is associated with two limitations. First, given that such trends may not be easily noticeable in small data, it is difficult to explicitly incorporate expressive structure into the models during formulation. Second, it is difficult to know $\textit{a priori}$ the most appropriate functional form to use. To address these limitations, a nonparametric Bayesian approach was proposed to implicitly capture hidden structure from time series having limited data. The proposed model, a Gaussian process with a spectral mixture kernel, precludes the need to pre-specify a functional form and hard code trends, is robust to overfitting and has well-calibrated uncertainty estimates.

stat.ML↗

arXiv2017

Minimum Connected Transversals in Graphs: New Hardness Results and Tractable Cases Using the Price of Connectivity

We perform a systematic study in the computational complexity of the connected variant of three related transversal problems: Vertex Cover, Feedback Vertex Set, and Odd Cycle Transversal. Just like their original counterparts, these variants are NP-complete for general graphs. A graph $G$ is $H$-free for some graph $H$ if $G$ contains no induced subgraph isomorphic to $H$. It is known that Connected Vertex Cover is NP-complete even for $H$-free graphs if $H$ contains a claw or a cycle. We show that the two other connected variants also remain NP-complete if $H$ contains a cycle or claw. In the remaining case $H$ is a linear forest. We show that Connected Vertex Cover, Connected Feedback Vertex Set, and Connected Odd Cycle Transversal are polynomial-time solvable for $sP_2$-free graphs for every constant $s\geq 1$. For proving these results we use known results on the price of connectivity for vertex cover, feedback vertex set, and odd cycle transversal. This is the first application of the price of connectivity that results in polynomial-time algorithms.

cs.DS↗

arXiv2017

Independent Feedback Vertex Sets for Graphs of Bounded Diameter

The Near-Bipartiteness problem is that of deciding whether or not the vertices of a graph can be partitioned into sets $A$ and $B$, where $A$ is an independent set and $B$ induces a forest. The set $A$ in such a partition is said to be an independent feedback vertex set. Yang and Yuan proved that Near-Bipartiteness is polynomial-time solvable for graphs of diameter 2 and NP-complete for graphs of diameter 4. We show that Near-Bipartiteness is NP-complete for graphs of diameter 3, resolving their open problem. We also generalise their result for diameter 2 by proving that even the problem of computing a minimum independent feedback vertex is polynomial-time solvable for graphs of diameter 2.

cs.DS↗

arXiv2017

Independent Feedback Vertex Set for $P_5$-free Graphs

The NP-complete problem Feedback Vertex Set is that of deciding whether or not it is possible, for a given integer $k\geq 0$, to delete at most $k$ vertices from a given graph so that what remains is a forest. The variant in which the deleted vertices must form an independent set is called Independent Feedback Vertex Set and is also NP-complete. In fact, even deciding if an independent feedback vertex set exists is NP-complete and this problem is closely related to the $3$-Colouring problem, or equivalently, to the problem of deciding whether or not a graph has an independent odd cycle transversal, that is, an independent set of vertices whose deletion makes the graph bipartite. We initiate a systematic study of the complexity of Independent Feedback Vertex Set for $H$-free graphs. We prove that it is NP-complete if $H$ contains a claw or cycle. Tamura, Ito and Zhou proved that it is polynomial-time solvable for $P_4$-free graphs. We show that it remains polynomial-time solvable for $P_5$-free graphs. We prove analogous results for the Independent Odd Cycle Transversal problem, which asks whether or not a graph has an independent odd cycle transversal of size at most $k$ for a given integer $k\geq 0$. Finally, in line with our underlying research aim, we compare the complexity of Independent Feedback Vertex Set for $H$-free graphs with the complexity of $3$-Colouring, Independent Odd Cycle Transversal and other related problems.

cs.DS↗

arXiv2017

Clique-Width for Graph Classes Closed under Complementation

Clique-width is an important graph parameter due to its algorithmic and structural properties. A graph class is hereditary if it can be characterized by a (not necessarily finite) set ${\cal H}$ of forbidden induced subgraphs. We initiate a systematic study into the boundedness of clique-width of hereditary graph classes closed under complementation. First, we extend the known classification for the $|{\cal H}|=1$ case by classifying the boundedness of clique-width for every set ${\cal H}$ of self-complementary graphs. We then completely settle the $|{\cal H}|=2$ case. In particular, we determine one new class of $(H,\overline{H})$-free graphs of bounded clique-width (as a side effect, this leaves only six classes of $(H_1,H_2)$-free graphs, for which it is not known whether their clique-width is bounded). Once we have obtained the classification of the $|{\cal H}|=2$ case, we research the effect of forbidding self-complementary graphs on the boundedness of clique-width. Surprisingly, we show that for a set ${\cal F}$ of self-complementary graphs on at least five vertices, the classification of the boundedness of clique-width for $(\{H,\overline{H}\}\cup {\cal F})$-free graphs coincides with the one for the $|{\cal H}|=2$ case if and only if ${\cal F}$ does not include the bull (the only non-empty self-complementary graphs on fewer than five vertices are $P_1$ and $P_4$, and $P_4$-free graphs have clique-width at most $2$). Finally, we discuss the consequences of our results for the Colouring problem.

cs.DM↗

arXiv2017

Hereditary Graph Classes: When the Complexities of Colouring and Clique Cover Coincide

A graph is $(H_1,H_2)$-free for a pair of graphs $H_1,H_2$ if it contains no induced subgraph isomorphic to $H_1$ or $H_2$. In 2001, Král', Kratochv\'ıl, Tuza, and Woeginger initiated a study into the complexity of Colouring for $(H_1,H_2)$-free graphs. Since then, others have tried to complete their study, but many cases remain open. We focus on those $(H_1,H_2)$-free graphs where $H_2$ is $\overline{H_1}$, the complement of $H_1$. As these classes are closed under complementation, the computational complexities of Colouring and Clique Cover coincide. By combining new and known results, we are able to classify the complexity of Colouring and Clique Cover for $(H,\overline{H})$-free graphs for all cases except when $H=sP_1+ P_3$ for $s\geq 3$ or $H=sP_1+P_4$ for $s\geq 2$. We also classify the complexity of Colouring on graph classes characterized by forbidding a finite number of self-complementary induced subgraphs, and we initiate a study of $k$-Colouring for $(P_r,\overline{P_r})$-free graphs.

cs.DS↗

arXiv2016

On a conjecture of Mohar concerning Kempe equivalence of regular graphs

Let $G$ be a graph with a vertex colouring $α$. Let $a$ and $b$ be two colours. Then a connected component of the subgraph induced by those vertices coloured either $a$ or $b$ is known as a Kempe chain. A colouring of $G$ obtained from $α$ by swapping the colours on the vertices of a Kempe chain is said to have been obtained by a Kempe change. Two colourings of $G$ are Kempe equivalent if one can be obtained from the other by a sequence of Kempe changes. A conjecture of Mohar (2007) asserts that, for $k \geq 3$, all $k$-colourings of a $k$-regular graph that is not complete are Kempe equivalent. It was later shown that all $3$-colourings of a cubic graph that is neither $K_4$ nor the triangular prism are Kempe equivalent. In this paper, we prove that the conjecture holds for each $k\geq 4$. We also report the implications of this result on the validity of the Wang-Swendsen-Kotecký algorithm for the antiferromagnetic Potts model at zero-temperature.

cs.DM↗

arXiv2016

Enclosings of Decompositions of Complete Multigraphs in 2-Factorizations

Let $k$, $λ$ and $μ$ be positive integers. A decomposition of a multigraph $ λG$ into edge-disjoint subgraphs $G_1, \ldots , G_k$ is said to be \emph{enclosed} by a decomposition of a multigraph $μH$ into edge-disjoint subgraphs $H_1, \ldots , H_k$ if $μ> λ$ and $G_i$ is a subgraph of $H_i$, $1 \leq i \leq k$. In this paper we initiate the study of when a decomposition can be enclosed by a decomposition that consists of spanning subgraphs. A decomposition of a graph is a 2-factorization if each subgraph is 2-regular and is Hamiltonian if each subgraph is a Hamiltonian cycle. Let $n$ and $m$ be positive integers. We give necessary and sufficient conditions for enclosing a decomposition of $λK_n$ in a $2$-factorization of $μK_{n+m}$ whenever $μ>λ$ and $m \geq n-2$. We also give necessary and sufficient conditions for enclosing a decomposition of $λK_n$ in a Hamiltonian decomposition of $μK_{n+m}$ whenever $μ> λ$ and $m \geq n-1$, or $μ> λ$, $n=3$ and $m=1$, or $μ= 2$, $λ=1$ and $m=n-2$.

math.CO↗

arXiv2016

Erdős-Ko-Rado Theorems for a Family of Trees

Given a graph $G$ and an integer $r\geq 1$, let $\mathcal{I}^{(r)}(G)$ denote the family of independent sets of size $r$ of $G$. For a vertex $v$ of $G$, let $\mathcal{I}^{(r)}_v(G)$ denote the family of independent sets of size $r$ that contain~$v$. This family is called an $r$-star and $v$ is the centre of the star. Then $G$ is said to be $r$-EKR if no pairwise intersecting subfamily of $\mathcal{I}^{(r)}(G)$ is bigger than the largest $r$-star, and if every maximum size pairwise intersecting subfamily of $\mathcal{I}^{(r)}(G)$ is an $r$-star, then $G$ is said to be strictly $r$-EKR. Let $μ(G)$ denote the minimum size of a maximal independent set of $G$. Holroyd and Talbot conjectured that if $2r \leq μ(G)$, then $G$ is $r$-EKR and strictly $r$-EKR if $2r < μ(G)$. An elongated claw is a tree in which one vertex is designated the root and no vertex other than the root has degree greater than 2. A depth-two claw is an elongated claw in which every vertex of degree~1 is at distance 2 from the root. We show that if $G$ is a depth-two claw, then $G$ is strictly $r$-EKR if $2r \leq μ(G)+1$, confirming the conjecture of Holroyd and Talbot for this family. We also show that if $G $ is an elongated claw with $n$ leaves and at least one leaf adjacent to the root, then $G$ is $r$-EKR if $2r \leq n$. Hurlbert and Kamat had conjectured that one can always find a largest $r$-star of a tree whose centre is a leaf. Baber and Borg have separately shown this to be false. We show that, moreover, for all $n \geq 2$, $d \geq 3$, there exists a positive integer $r$ such that there is a tree where the centre of the largest $r$-star is a vertex of degree $n$ at distance at least $d$ from every leaf.

math.CO↗