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Matthew R. Carbone

Publications and source records attributed to Matthew R. Carbone.

At least 19 recordsLinked to original sources
arXiv2025

Hamiltonian parameter inference from resonant inelastic x-ray scattering with active learning

Identifying model Hamiltonians is a vital step toward creating predictive models of materials. Here, we combine Bayesian optimization with the EDRIXS numerical package to infer Hamiltonian parameters from resonant inelastic X-ray scattering (RIXS) spectra within the single atom approximation. To evaluate the efficacy of our method, we test it on experimental RIXS spectra of NiPS3, NiCl2, Ca3LiOsO6, and Fe2O3, and demonstrate that it can reproduce results obtained from hand-fitted parameters to a precision similar to expert human analysis while providing a more systematic mapping of parameter space. Our work provides a key first step toward solving the inverse scattering problem to extract effective multi-orbital models from information-dense RIXS measurements, which can be applied to a host of quantum materials. We also propose atomic model parameter sets for two materials, Ca3LiOsO6 and Fe2O3, that were previously missing from the literature.

cond-mat.str-el↗
arXiv2025

Advancing AI-Driven Analysis in X-ray Absorption Spectroscopy: Spectral Domain Mapping and Universal Models

In recent years, rapid progress has been made in developing artificial intelligence (AI) and machine learning (ML) methods for x-ray absorption spectroscopy (XAS) analysis. Compared to traditional XAS analysis methods, AI/ML approaches offer dramatic improvements in efficiency and help eliminate human bias. To advance this field, we advocate an AI-driven XAS analysis pipeline that features several inter-connected key building blocks: benchmarks, workflows, databases, and AI/ML models. Specifically, we present two case studies for XAS ML. In the first study, we demonstrate the importance of reconciling the discrepancies between simulation and experiment using spectral domain mapping (SDM). Our ML model, which is trained solely on simulated spectra, predicts an incorrect oxidation state trend for Ti atoms in a combinatorial zinc titanate film. After transforming the experimental spectra into a simulation-like representation using SDM, the same model successfully recovers the correct oxidation state trend. In the second study, we explore the development of universal XAS ML models that are trained on the entire periodic table, which enables them to leverage common trends across elements. Looking ahead, we envision that an AI-driven pipeline can unlock the potential of real-time XAS analysis to accelerate scientific discovery.

cond-mat.mtrl-sci↗
arXiv2025

OmniXAS: A Universal Deep-Learning Framework for Materials X-ray Absorption Spectra

X-ray absorption spectroscopy (XAS) is a powerful characterization technique for probing the local chemical environment of absorbing atoms. However, analyzing XAS data presents significant challenges, often requiring extensive, computationally intensive simulations, as well as significant domain expertise. These limitations hinder the development of fast, robust XAS analysis pipelines that are essential in high-throughput studies and for autonomous experimentation. We address these challenges with OmniXAS, a framework that contains a suite of transfer learning approaches for XAS prediction, each contributing to improved accuracy and efficiency, as demonstrated on K-edge spectra database covering eight 3d transition metals (Ti-Cu). The OmniXAS framework is built upon three distinct strategies. First, we use M3GNet to derive latent representations of the local chemical environment of absorption sites as input for XAS prediction, achieving up to order-of-magnitude improvements over conventional featurization techniques. Second, we employ a hierarchical transfer learning strategy, training a universal multi-task model across elements before fine-tuning for element-specific predictions. Models based on this cascaded approach after element-wise fine-tuning outperform element-specific models by up to 69%. Third, we implement cross-fidelity transfer learning, adapting a universal model to predict spectra generated by simulation of a different fidelity with a higher computational cost. This approach improves prediction accuracy by up to 11% over models trained on the target fidelity alone. Our approach boosts the throughput of XAS modeling by orders of magnitude versus first-principles simulations and is extendable to XAS prediction for a broader range of elements. This transfer learning framework is generalizable to enhance deep-learning models that target other properties in materials research.

cond-mat.mtrl-sci↗
arXiv2024

Empirical Measurements of AI Training Power Demand on a GPU-Accelerated Node

The expansion of artificial intelligence (AI) applications has driven substantial investment in computational infrastructure, especially by cloud computing providers. Quantifying the energy footprint of this infrastructure requires models parameterized by the power demand of AI hardware during training. We empirically measured the instantaneous power draw of an 8-GPU NVIDIA H100 HGX node during the training of open-source image classifier (ResNet) and large-language models (Llama2-13b). The maximum observed power draw was approximately 8.4 kW, 18% lower than the manufacturer-rated 10.2 kW, even with GPUs near full utilization. Holding model architecture constant, increasing batch size from 512 to 4096 images for ResNet reduced total training energy consumption by a factor of 4. These findings can inform capacity planning for data center operators and energy use estimates by researchers. Future work will investigate the impact of cooling technology and carbon-aware scheduling on AI workload energy consumption.

cs.AR↗
arXiv2024

CuXASNet: Rapid and Accurate Prediction of Copper L-edge X-Ray Absorption Spectra Using Machine Learning

In this work, we have developed CuXASNet, a dense neural network that predicts simulated Cu L-edge X-ray absorption spectra (XAS) from atomic structures. Featurization of the Cu local environment is performed using a component of M3GNet, a graph neural network developed for predicting the potential energy surface. CuXASNet is trained on simulated spectra from FEFF9 at the multiple scattering level of theory, and can predict the L3 and L2 edges for Cu sites to quantitative accuracy. To validate our approach, we compare 14 experimental spectra extracted from the literature with the predictions of CuXASNet. The agreement of CuXASNet with experiments is shown by an average MAE of 0.125 and an average Spearman's correlation coefficient of 0.891, which is comparable to FEFF9's values of 0.131 and 0.898 for the same metrics. As such, CuXASNet can rapidly generate a large number of L-edge XAS spectra at the same accuracy as FEFF9 simulations. This can be used as a drop-in replacement for multiple scattering codes for fast screening of candidate atomic structure models of a measured system. This model establishes a general framework for Cu XAS prediction, and can be extended to more computationally expensive levels of theory and to other transition metal L-edges.

cond-mat.mtrl-sci↗
arXiv2024

Physically interpretable approximations of many-body spectral functions

The rational function approximation provides a natural and interpretable representation of response functions such as the many-body spectral functions. We apply the Vector Fitting (VFIT) algorithm to fit a variety of spectral functions calculated from the Holstein model of electron-phonon interactions. We show that the resulting rational functions are highly efficient in their fitting of sharp features in the spectral functions, and could provide a means to infer physically relevant information from a spectral dataset. The position of the peaks in the approximated spectral function are determined by the location of poles in the complex plane. In addition, we developed an enhanced version of VFIT by introducing a regularization parameter that is slowly annealed to zero. With this new procedure, we demonstrate it is possible to achieve accurate spectral function fits that vary smoothly as a function of physical conditions.

cond-mat.stat-mech↗
arXiv2023

Spectroscopy-Guided Discovery of Three-Dimensional Structures of Disordered Materials with Diffusion Models

The ability to rapidly develop materials with desired properties has a transformative impact on a broad range of emerging technologies. In this work, we introduce a new framework based on the diffusion model, a recent generative machine learning method to predict 3D structures of disordered materials from a target property. For demonstration, we apply the model to identify the atomic structures of amorphous carbons ($a$-C) as a representative material system from the target X-ray absorption near edge structure (XANES) spectra--a common experimental technique to probe atomic structures of materials. We show that conditional generation guided by XANES spectra reproduces key features of the target structures. Furthermore, we show that our model can steer the generative process to tailor atomic arrangements for a specific XANES spectrum. Finally, our generative model exhibits a remarkable scale-agnostic property, thereby enabling generation of realistic, large-scale structures through learning from a small-scale dataset (i.e., with small unit cells). Our work represents a significant stride in bridging the gap between materials characterization and atomic structure determination; in addition, it can be leveraged for materials discovery in exploring various material properties as targeted.

cond-mat.mtrl-sci↗
arXiv2023

Atomic Insights into the Oxidative Degradation Mechanisms of Sulfide Solid Electrolytes

Electrochemical degradation of solid electrolytes is a major roadblock in the development of solid-state batteries, and the formed solid-solid interphase (SSI) plays a key role in the performance of solid-state batteries. In this study, by combining experimental X-ray absorption spectroscopy (XAS) measurements, first-principles simulations, and unsupervised machine learning, we have unraveled the atomic-scale oxidative degradation mechanisms of sulfide electrolytes at the interface using the baseline Li3PS4 (LPS) electrolyte as a model system. The degradation begins with a decrease of Li neighbor affinity to S atoms upon initial delithiation, followed by the formation of S-S bonds as the PS4 tetrahedron deforms. After the first delithiation cycle, the PS4 motifs become strongly distorted and PS3 motifs start to form. Spectral fingerprints of the local structural evolution are identified, which correspond to the main peak broadening and the peak shifting to a higher energy by about 2.5 eV in P K-edge XAS and a new peak emerging at 2473 eV in S K-edge XAS during delithiation. The spectral fingerprints serve as a proxy for the electrochemical stability of phosphorus sulfide solid electrolytes beyond LPS, as demonstrated in argyrodite Li6PS5Cl. We observed that the strong distortion and destruction of PS4 tetrahedra and the formation of S-S bonds are correlated with an increased interfacial impedance. To the best of our knowledge, this study showcases the first atomic-scale insights into the oxidative degradation mechanism of the LPS electrolyte, which can provide guidance for controlling macroscopic reactions through microstructural engineering and, more generally, can advance the rational design of sulfide electrolytes.

cond-mat.mtrl-sci↗
arXiv2023

Transferable Graph Neural Fingerprint Models for Quick Response to Future Bio-Threats

Fast screening of drug molecules based on the ligand binding affinity is an important step in the drug discovery pipeline. Graph neural fingerprint is a promising method for developing molecular docking surrogates with high throughput and great fidelity. In this study, we built a COVID-19 drug docking dataset of about 300,000 drug candidates on 23 coronavirus protein targets. With this dataset, we trained graph neural fingerprint docking models for high-throughput virtual COVID-19 drug screening. The graph neural fingerprint models yield high prediction accuracy on docking scores with the mean squared error lower than $0.21$ kcal/mol for most of the docking targets, showing significant improvement over conventional circular fingerprint methods. To make the neural fingerprints transferable for unknown targets, we also propose a transferable graph neural fingerprint method trained on multiple targets. With comparable accuracy to target-specific graph neural fingerprint models, the transferable model exhibits superb training and data efficiency. We highlight that the impact of this study extends beyond COVID-19 dataset, as our approach for fast virtual ligand screening can be easily adapted and integrated into a general machine learning-accelerated pipeline to battle future bio-threats.

q-bio.BM↗
arXiv2023

Emulating Expert Insight: A Robust Strategy for Optimal Experimental Design

The challenge of optimal design of experiments (DOE) pervades materials science, physics, chemistry, and biology. Bayesian optimization has been used to address this challenge in vast sample spaces, although it requires framing experimental campaigns through the lens of maximizing some observable. This framing is insufficient for epistemic research goals that seek to comprehensively analyze a sample space, without an explicit scalar objective (e.g., the characterization of a wafer or sample library). In this work, we propose a flexible formulation of scientific value that recasts a dataset of input conditions and higher-dimensional observable data into a continuous, scalar metric. Intuitively, the scientific value function measures where observables change significantly, emulating the perspective of experts driving an experiment, and can be used in collaborative analysis tools or as an objective for optimization techniques. We demonstrate this technique by exploring simulated phase boundaries from different observables, autonomously driving a variable temperature measurement of a ferroelectric material, and providing feedback from a nanoparticle synthesis campaign. The method is seamlessly compatible with existing optimization tools, can be extended to multi-modal and multi-fidelity experiments, and can integrate existing models of an experimental system. Because of its flexibility, it can be deployed in a range of experimental settings for autonomous or accelerated experiments.

cond-mat.mtrl-sci↗
arXiv2023

Accurate, uncertainty-aware classification of molecular chemical motifs from multi-modal X-ray absorption spectroscopy

Accurate classification of molecular chemical motifs from experimental measurement is an important problem in molecular physics, chemistry and biology. In this work, we present neural network ensemble classifiers for predicting the presence (or lack thereof) of 41 different chemical motifs on small molecules from simulated C, N and O K-edge X-ray absorption near-edge structure (XANES) spectra. Our classifiers not only reach a maximum average class-balanced accuracy of 0.99 but also accurately quantify uncertainty. We also show that including multiple XANES modalities improves predictions notably on average, demonstrating a "multi-modal advantage" over any single modality. In addition to structure refinement, our approach can be generalized for broad applications with molecular design pipelines.

cond-mat.mtrl-sci↗
arXiv2023

Simulated sulfur K-edge X-ray absorption spectroscopy database of lithium thiophosphate solid electrolytes

X-ray absorption spectroscopy (XAS) is a premier technique for materials characterization, providing key information about the local chemical environment of the absorber atom. In this work, we develop a database of sulfur K-edge XAS spectra of crystalline and amorphous lithium thiophosphate materials based on the atomic structures reported in Chem. Mater., 34, 6702 (2022). The XAS database is based on simulations using the excited electron and core-hole pseudopotential approach implemented in the Vienna Ab initio Simulation Package. Our database contains 2681 S K-edge XAS spectra for 66 crystalline and glassy structure models, making it the largest collection of first-principles computational XAS spectra for glass/ceramic lithium thiophosphates to date. This database can be used to correlate S spectral features with distinct S species based on their local coordination and short-range ordering in sulfide-based solid electrolytes. The data is openly distributed via the Materials Cloud, allowing researchers to access it for free and use it for further analysis, such as spectral fingerprinting, matching with experiments, and developing machine learning models.

cond-mat.mtrl-sci↗
arXiv2023

Uncertainty-aware predictions of molecular X-ray absorption spectra using neural network ensembles

As machine learning (ML) methods continue to be applied to a broad scope of problems in the physical sciences, uncertainty quantification is becoming correspondingly more important for their robust application. Uncertainty aware machine learning methods have been used in select applications, but largely for scalar properties. In this work, we showcase an exemplary study in which neural network ensembles are used to predict the X-ray absorption spectra of small molecules, as well as their point-wise uncertainty, from local atomic environments. The performance of the resulting surrogate clearly demonstrates quantitative correlation between errors relative to ground truth and the predicted uncertainty estimates. Significantly, the model provides an upper bound on the expected error. Specifically, an important quality of this uncertainty-aware model is that it can indicate when the model is predicting on out-of-sample data. This allows for its integration with large scale sampling of structures together with active learning or other techniques for structure refinement. Additionally, our models can be generalized to larger molecules than those used for training, and also successfully track uncertainty due to random distortions in test molecules. While we demonstrate this workflow on a specific example, ensemble learning is completely general. We believe it could have significant impact on ML-enabled forward modeling of a broad array of molecular and materials properties.

cond-mat.mtrl-sci↗
arXiv2023

Self-driving Multimodal Studies at User Facilities

Multimodal characterization is commonly required for understanding materials. User facilities possess the infrastructure to perform these measurements, albeit in serial over days to months. In this paper, we describe a unified multimodal measurement of a single sample library at distant instruments, driven by a concert of distributed agents that use analysis from each modality to inform the direction of the other in real time. Powered by the Bluesky project at the National Synchrotron Light Source II, this experiment is a world's first for beamline science, and provides a blueprint for future approaches to multimodal and multifidelity experiments at user facilities.

cond-mat.mtrl-sci↗
arXiv2023

Machine-learning the spectral function of a hole in a quantum antiferromagnet

Understanding charge motion in a background of interacting quantum spins is a fundamental problem in quantum many-body physics. The most extensively studied model for this problem is the so-called $t$-$t'$-$t''$-$J$ model, where the determination of the parameter $t'$ in the context of cuprate superconductors is challenging. Here we present a theoretical study of the spectral functions of a mobile hole in the $t$-$t'$-$t''$-$J$ model using two machine learning techniques: K-nearest Neighbors regression (KNN) and a feed-forward neural network (FFNN). We employ the self-consistent Born approximation to generate a dataset of about $1.3 \times 10^5$ spectral functions. We show that for the forward problem, both methods allow for the accurate and efficient prediction of spectral functions, allowing for e.g. rapid searches through parameter space. Furthermore, we find that for the inverse problem (inferring Hamiltonian parameters from spectra), the FFNN can, but the KNN cannot, accurately predict the model parameters using merely the density-of-state. Our results suggest that it may be possible to use deep learning methods to predict materials parameters from experimentally measured spectral functions.

cond-mat.str-el↗
arXiv2023

Decoding Structure-Spectrum Relationships with Physically Organized Latent Spaces

A new semi-supervised machine learning method for the discovery of structure-spectrum relationships is developed and demonstrated using the specific example of interpreting X-ray absorption near-edge structure (XANES) spectra. This method constructs a one-to-one mapping between individual structure descriptors and spectral trends. Specifically, an adversarial autoencoder is augmented with a novel rank constraint (RankAAE). The RankAAE methodology produces a continuous and interpretable latent space, where each dimension can track an individual structure descriptor. As a part of this process, the model provides a robust and quantitative measure of the structure-spectrum relationship by decoupling intertwined spectral contributions from multiple structural characteristics. This makes it ideal for spectral interpretation and the discovery of new descriptors. The capability of this procedure is showcased by considering five local structure descriptors and a database of over fifty thousand simulated XANES spectra across eight first-row transition metal oxide families. The resulting structure-spectrum relationships not only reproduce known trends in the literature, but also reveal unintuitive ones that are visually indiscernible in large data sets. The results suggest that the RankAAE methodology has great potential to assist researchers to interpret complex scientific data, test physical hypotheses, and reveal new patterns that extend scientific insight.

cond-mat.mtrl-sci↗
arXiv2022

Lightshow: a Python package for generating computational x-ray absorption spectroscopy input files

First-principles computational spectroscopy is a critical tool for interpreting experiment, performing structure refinement, and developing new physical understanding. Systematically setting up input files for different simulation codes and a diverse class of materials is a challenging task with a very high barrier-to-entry, given the complexities and nuances of each individual simulation package. This task is non-trivial even for experts in the electronic structure field and nearly formidable for non-expert researchers. Lightshow solves this problem by providing a uniform abstraction for writing computational x-ray spectroscopy input files for multiple popular codes, including FEFF, VASP, OCEAN, EXCITING and XSPECTRA. Its extendable framework will also allow the community to easily add new functions and to incorporate new simulation codes.

cond-mat.mtrl-sci↗
arXiv2022

The Generalized Green's function Cluster Expansion: A Python package for simulating polarons

We present an efficient implementation of the Generalized Green's function Cluster Expansion (GGCE), which is a new method for computing the ground-state properties and dynamics of polarons (single electrons coupled to lattice vibrations) in model electron-phonon systems. The GGCE works at arbitrary temperature and is well suited for a variety of electron-phonon couplings, including, but not limited to, site and bond Holstein and Peierls (Su-Schrieffer-Heeger) couplings, and couplings to multiple phonon modes with different energy scales and coupling strengths. Quick calculations can be performed efficiently on a laptop using solvers from NumPy and SciPy, or in parallel at scale using the PETSc sparse linear solver engine.

physics.comp-ph↗