arXiv subjects

Md Monzur Murshed

Publications and source records attributed to Md Monzur Murshed.

6 recordsLinked to original sources

arXiv2026

Copula Based Fusion of Clinical and Genomic Machine Learning Risk Scores for Breast Cancer Risk Stratification

Clinical and gene-expression models predict breast cancer outcomes, but simple linear fusion ignores dependence between their risk scores. Using METABRIC, we tested whether modeling the joint distribution of clinical and gene-expression scores improved stratification of 5-year cancer-specific mortality. We defined clinical and mRNA-expression predictor views, trained classifiers, and obtained out-of-fold probabilities through 5-fold cross-validation. The scores were transformed into pseudo-observations on (0,1)^2 and used to fit Gaussian, Clayton, Gumbel, and Frank copulas. The clinical model discriminated better than the gene-expression model (AUC 0.783 vs 0.721). Frank had the smallest goodness-of-fit statistic, with Gaussian performing similarly. Copula fusion did not improve ROC-AUC over the clinical model. However, joint score groups showed clear survival differences, with patients scoring high on both views having the poorest outcomes. Competing-risks analysis showed the same pattern for cancer-death incidence. We also conducted an external evaluation in independent TCGA data using shared predictors and a harmonized 5-year overall-mortality endpoint. Copula-fused, individual, and simple-fusion scores showed comparable discrimination with overlapping confidence intervals. All received the same METABRIC-based recalibration. No gene met the prespecified stability criterion under repeated cross-validated permutation importance, so gene-level findings were treated as exploratory. Copulas provide an explicit, interpretable description of dependence between clinical and gene-expression risk scores and support descriptive joint-group analyses. This methodological study does not establish superior prediction, validated clinical risk categories, or clinical utility.

cs.LG↗

arXiv2026

CopulaSMOTE: A Copula-Based Oversampling Approach for Imbalanced Classification in Diabetes Prediction

Class imbalance remains a practical obstacle in the development of clinical prediction models for conditions such as diabetes mellitus, where the number of confirmed cases is often much smaller than the number of controls. The Synthetic Minority Over-sampling Technique (SMOTE) and its variants are widely used to address this imbalance, but they generate synthetic observations through local interpolation in feature space and do not explicitly model the joint dependence structure of the minority class. To address this challenge, our study introduces a copula-based data augmentation approach that estimates the minority-class dependence structure when generating synthetic samples and integrates with standard machine learning techniques. Specifically, we employ truncated vine copulas to represent multivariate dependence through a sequence of bivariate building blocks. We evaluate the proposed approach on three public diabetes datasets, namely the Pima Indians Diabetes dataset, the Iraqi Diabetes dataset, and the CDC BRFSS 2015 Diabetes Health Indicators dataset, which together cover a range of sample sizes, dimensionalities, and imbalance regimes. For each dataset, five resampling strategies are compared across five classifiers using a 5 by 2 cross validation protocol with Dietterich's paired t test. Our findings suggest that CopulaSMOTE can improve minority-class recovery in larger tabular diabetes datasets, particularly the CDC BRFSS dataset, but its advantages depend on the classifier and evaluation metric.

cs.LG↗

arXiv2026

A Copula Based Supervised Filter for Feature Selection in Diabetes Risk Prediction Using Machine Learning

Effective feature selection is critical for robust and interpretable predictive modeling in medicine, especially when risk factors matter most in extreme patient strata. Many standard selectors emphasize average associations and can miss predictors whose relevance is concentrated in the distribution tails. We propose a computationally efficient supervised filter based on a Gumbel-copula implied upper-tail concordance score (lambda U), defined as a monotone transformation of Kendall's tau, to rank features by their tendency to be simultaneously extreme with the positive class. We compare against four common baselines (Mutual Information, mRMR, ReliefF, and L1/Elastic-Net) across four classifiers on two diabetes datasets: a large-scale public health survey (CDC, N=253,680) and a clinical benchmark (PIMA, N=768). Analyses include statistical testing, permutation importance, and robustness checks. On CDC, the proposed selector is the fastest and reduces 21 features to 10 (approx 52%). This yields a small but statistically significant trade-off relative to using all features, while performing better than standard filters (Mutual Information, mRMR) and comparably to the strong ReliefF baseline. On PIMA (8 predictors), the resulting ranking attains the highest ROC-AUC numerically, though paired DeLong tests show no significant differences versus strong baselines; PIMA therefore serves as a ranking-only sanity check in a low-dimensional setting. Across both datasets, the lambda U-based selector highlights clinically coherent predictors and provides an efficient, interpretable screening step that can complement standard feature-selection methods in public health and clinical risk prediction.

stat.ML↗

arXiv2026

Bag of Coins: A Statistical Probe into Neural Confidence Structures

Modern neural networks often produce miscalibrated confidence scores and struggle to detect out-of-distribution (OOD) inputs, while most existing methods post-process outputs without testing internal consistency. We introduce the Bag-of-Coins (BoC) probe, a non-parametric diagnostic of logit coherence that compares softmax confidence $\hat p$ to an aggregate of pairwise Luce-style dominance probabilities $\bar q$, yielding a deterministic coherence score and a p-value-based structural score. Across ViT, ResNet, and RoBERTa with ID/OOD test sets, the coherence gap $Δ=\bar q-\hat p$ reveals clear ID/OOD separation for ViT (ID ${\sim}0.1$-$0.2$, OOD ${\sim}0.5$-$0.6$) but substantial overlap for ResNet and RoBERTa (both ${\sim}0$), indicating architecture-dependent uncertainty geometry. As a practical method, BoC improves calibration only when the base model is poorly calibrated (ViT: ECE $0.024$ vs.\ $0.180$) and underperforms standard calibrators (ECE ${\sim}0.005$), while for OOD detection it fails across architectures (AUROC $0.020$-$0.253$) compared to standard scores ($0.75$-$0.99$). We position BoC as a research diagnostic for interrogating how architectures encode uncertainty in logit geometry rather than a production calibration or OOD detection method.

stat.ML↗

arXiv2025

A Machine Learning Framework for Breast Cancer Treatment Classification Using a Novel Dataset

Breast cancer (BC) remains a significant global health challenge, with personalized treatment selection complicated by the disease's molecular and clinical heterogeneity. BC treatment decisions rely on various patient-specific clinical factors, and machine learning (ML) offers a powerful approach to predicting treatment outcomes. This study utilizes The Cancer Genome Atlas (TCGA) breast cancer clinical dataset to develop ML models for predicting the likelihood of undergoing chemotherapy or hormonal therapy. The models are trained using five-fold cross-validation and evaluated through performance metrics, including accuracy, precision, recall, specificity, sensitivity, F1-score, and area under the receiver operating characteristic curve (AUROC). Model uncertainty is assessed using bootstrap techniques, while SHAP values enhance interpretability by identifying key predictors. Among the tested models, the Gradient Boosting Machine (GBM) achieves the highest stable performance (accuracy = 0.7718, AUROC = 0.8252), followed by Extreme Gradient Boosting (XGBoost) (accuracy = 0.7557, AUROC = 0.8044) and Adaptive Boosting (AdaBoost) (accuracy = 0.7552, AUROC = 0.8016). These findings underscore the potential of ML in supporting personalized breast cancer treatment decisions through data-driven insights.

stat.AP↗

arXiv2025

A2 Copula-Driven Spatial Bayesian Neural Network For Modeling Non-Gaussian Dependence: A Simulation Study

In this paper, we introduce the A2 Copula Spatial Bayesian Neural Network (A2-SBNN), a predictive spatial model designed to map coordinates to continuous fields while capturing both typical spatial patterns and extreme dependencies. By embedding the dual-tail novel Archimedean copula viz. A2 directly into the network's weight initialization, A2-SBNN naturally models complex spatial relationships, including rare co-movements in the data. The model is trained through a calibration-driven process combining Wasserstein loss, moment matching, and correlation penalties to refine predictions and manage uncertainty. Simulation results show that A2-SBNN consistently delivers high accuracy across a wide range of dependency strengths, offering a new, effective solution for spatial data modeling beyond traditional Gaussian-based approaches.

stat.ME↗