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Mehran Kardar

Publications and source records attributed to Mehran Kardar.

At least 127 records · Page 7Linked to original sources

Information Optimization in Coupled Audio-Visual Cortical Maps

Barn owls hunt in the dark by using cues from both sight and sound to locate their prey. This task is facilitated by topographic maps of the external space formed by neurons (e.g., in the optic tectum) that respond to visual or aural signals from a specific direction. Plasticity of these maps has been studied in owls forced to wear prismatic spectacles that shift their visual field. Adaptive behavior in young owls is accompanied by a compensating shift in the response of (mapped) neurons to auditory signals. We model the receptive fields of such neurons by linear filters that sample correlated audio-visual signals, and search for filters that maximize the gathered information, while subject to the costs of rewiring neurons. Assuming a higher fidelity of visual information, we find that the corresponding receptive fields are robust and unchanged by artificial shifts. The shape of the aural receptive field, however, is controlled by correlations between sight and sound. In response to prismatic glasses, the aural receptive fields shift in the compensating direction, although their shape is modified due to the costs of rewiring.

physics.bio-ph↗

Knots in Charged Polymers

The interplay of topological constraints and Coulomb interactions in static and dynamic properties of charged polymers is investigated by numerical simulations and scaling arguments. In the absence of screening, the long-range interaction localizes irreducible topological constraints into tight molecular knots, while composite constraints are factored and separated. Even when the forces are screened, tight knots may survive as local (or even global) equilibria, as long as the overall rigidity of the polymer is dominated by the Coulomb interactions. As entanglements involving tight knots are not easy to eliminate, their presence greatly influences the relaxation times of the system. In particular, we find that tight knots in open polymers are removed by diffusion along the chain, rather than by opening up. The knot diffusion coefficient actually decreases with its charge density, and for highly charged polymers the knot's position appears frozen.

cond-mat.stat-mech↗

Force-Extension Relations for Polymers with Sliding Links

Topological entanglements in polymers are mimicked by sliding rings (slip-links) which enforce pair contacts between monomers. We study the force-extension curve for linear polymers in which slip-links create additional loops of variable size. For a single loop in a phantom chain, we obtain exact expressions for the average end-to-end separation: The linear response to a small force is related to the properties of the unstressed chain, while for a large force the polymer backbone can be treated as a sequence of Pincus--de Gennes blobs, the constraint effecting only a single blob. Generalizing this picture, scaling arguments are used to include self-avoiding effects.

cond-mat.stat-mech↗

Pulling Knotted Polymers

We compare Monte Carlo simulations of knotted and unknotted polymers whose ends are connected to two parallel walls. The force $f$ exerted on the polymer is measured as a function of the separation $R$ between the walls. For unknotted polymers of several monomer numbers $N$, the product $fN^ν$ is a simple function of $R/N^ν$, where $ν\simeq 0.59$. By contrast, knotted polymers exhibit strong finite size effects which can be interpreted in terms of a new length scale related to the size of the knot. Based on this interpretation, we conclude that the number of monomers forming the knot scales as $N^t$, with $t=0.4\pm 0.1$.

cond-mat.stat-mech↗

Passive Sliders on Growing Surfaces and (anti-)Advection in Burger's Flows

We study the fluctuations of particles sliding on a stochastically growing surface. This problem can be mapped to motion of passive scalars in a randomly stirred Burger's flow. Renormalization group studies, simulations, and scaling arguments in one dimension, suggest a rich set of phenomena: If particles slide with the avalanche of growth sites (advection with the fluid), they tend to cluster and follow the surface dynamics. However, for particles sliding against the avalanche (anti-advection), we find slower diffusion dynamics, and density fluctuations with no simple relation to the underlying fluid, possibly with continuously varying exponents.

cond-mat.stat-mech↗

Tightness of slip-linked polymer chains

We study the interplay between entropy and topological constraints for a polymer chain in which sliding rings (slip-links) enforce pair contacts between monomers. These slip-links divide a closed ring polymer into a number of sub-loops which can exchange length between each other. In the ideal chain limit, we find the joint probability density function for the sizes of segments within such a slip-linked polymer chain (paraknot). A particular segment is tight (small in size) or loose (of the order of the overall size of the paraknot) depending on both the number of slip-links it incorporates and its competition with other segments. When self-avoiding interactions are included, scaling arguments can be used to predict the statistics of segment sizes for certain paraknot configurations.

cond-mat.stat-mech↗

Probing the Strong Boundary Shape Dependence of the Casimir Force

We study the geometry dependence of the Casimir energy for deformed metal plates by a path integral quantization of the electromagnetic field. For the first time, we give a complete analytical result for the deformation induced change in Casimir energy δ\cal E in an experimentally testable, nontrivial geometry, consisting of a flat and a corrugated plate. Our results show an interesting crossover for δ\cal E as a function of the ratio of the mean plate distance H, to the corrugation length λ: For λ\ll H we find a {\em slower} decay \sim H^{-4}, compared to the H^{-5} behavior predicted by the commonly used pairwise summation of van der Waals forces, which is valid only for λ\gg H.

cond-mat.stat-mech↗

Correlation functions near Modulated and Rough Surfaces

In a system with long-ranged correlations, the behavior of correlation functions is sensitive to the presence of a boundary. We show that surface deformations strongly modify this behavior as compared to a flat surface. The modified near surface correlations can be measured by scattering probes. To determine these correlations, we develop a perturbative calculation in the deformations in height from a flat surface. Detailed results are given for a regularly patterned surface, as well as for a self-affinely rough surface with roughness exponent $ζ$. By combining this perturbative calculation in height deformations with the field-theoretic renormalization group approach, we also estimate the values of critical exponents governing the behavior of the decay of correlation functions near a self-affinely rough surface. We find that for the interacting theory, a large enough $ζ$ can lead to novel surface critical behavior. We also provide scaling relations between roughness induced critical exponents for thermodynamic surface quantities.

cond-mat.stat-mech↗

Equilibrium shapes of flat knots

We study the equilibrium shapes of prime and composite knots confined to two dimensions. Using rigorous scaling arguments we show that, due to self-avoiding effects, the topological details of prime knots are localised on a small portion of the larger ring polymer. Within this region, the original knot configuration can assume a hierarchy of contracted shapes, the dominating one given by just one small loop. This hierarchy is investigated in detail for the flat trefoil knot, and corroborated by Monte Carlo simulations.

cond-mat.stat-mech↗

Anomalous Dynamics of Translocation

We study the dynamics of the passage of a polymer through a membrane pore (translocation), focusing on the scaling properties with the number of monomers $N$. The natural coordinate for translocation is the number of monomers on one side of the hole at a given time. Commonly used models which assume Brownian dynamics for this variable predict a mean (unforced) passage time $τ$ that scales as $N^2$, even in the presence of an entropic barrier. However, the time it takes for a free polymer to diffuse a distance of the order of its radius by Rouse dynamics scales with an exponent larger than 2, and this should provide a lower bound to the translocation time. To resolve this discrepancy, we perform numerical simulations with Rouse dynamics for both phantom (in space dimensions $d=1$ and 2), and self-avoiding (in $d=2$) chains. The results indicate that for large $N$, translocation times scale in the same manner as diffusion times, but with a larger prefactor that depends on the size of the hole. Such scaling implies anomalous dynamics for the translocation process. In particular, the fluctuations in the monomer number at the hole are predicted to be non-diffusive at short times, while the average pulling velocity of the polymer in the presence of a chemical potential difference is predicted to depend on $N$.

cond-mat.soft↗

Modified critical correlations close to modulated and rough surfaces

Correlation functions are sensitive to the presence of a boundary. Surface modulations give rise to modified near surface correlations, which can be measured by scattering probes. To determine these correlations, we develop a perturbative calculation in deformations in height from a flat surface. The results, combined with a renormalization group around four dimensions, are also used to predict critical behavior near a self-affinely rough surface. We find that a large enough roughness exponent can modify surface critical behavior.

cond-mat.stat-mech↗

Macroscopic equations for pattern formation in mixtures of microtubules and motors

Inspired by patterns observed in mixtures of microtubules and molecular motors, we propose continuum equations for the evolution of motor density, and microtubule orientation. The chief ingredients are the transport of motors along tubules, and the alignment of tubules in the process. The macroscopic equations lead to aster and vortex patterns in qualitative agreement with experiments. While the early stages of evolution of tubules are similar to coarsening of spins following a quench, the rearrangement of motors leads to arrested coarsening at low densities. Even in one dimension, the equations exhibit a variety of interesting behaviors, such as symmetry breaking, moving fronts, and motor localization.

cond-mat.stat-mech↗

Free Energy Self-Averaging in Protein-Sized Random Heteropolymers

Current theories of heteropolymers are inherently macrpscopic, but are applied to folding proteins which are only mesoscopic. In these theories, one computes the averaged free energy over sequences, always assuming that it is self-averaging -- a property well-established only if a system with quenched disorder is macroscopic. By enumerating the states and energies of compact 18, 27, and 36mers on a simplified lattice model with an ensemble of random sequences, we test the validity of the self-averaging approximation. We find that fluctuations in the free energy between sequences are weak, and that self-averaging is a valid approximation at the length scale of real proteins. These results validate certain sequence design methods which can exponentially speed up computational design and greatly simplify experimental realizations.

cond-mat.soft↗

Probability Distributions of Line Lattices in Random Media from the 1D Bose Gas

The statistical properties of a two dimensional lattice of elastic lines in a random medium are studied using the Bethe ansatz. We present a novel mapping of the dilute random line lattice onto the weak coupling limit of a pure Bose gas with delta-function interactions. Using this mapping, we calculate the cumulants of the free energy in the dilute limit exactly. The relation between density and displacement correlation functions in the two models is examined and compared with existing results from renormalization group and variational ansaetze.

cond-mat.stat-mech↗

Thermodynamic Fingerprints of Disorder in Flux Line Lattices and other Glassy Mesoscopic Systems

We examine probability distributions for thermodynamic quantities in finite-sized random systems close to criticality. Guided by available exact results, a general ansatz is proposed for replicated free energies, which leads to scaling forms for cumulants of various macroscopic observables. For the specific example of a planar flux line lattice in a two dimensional superconducting film near H_c1, we provide detailed results for the statistics of the magnetic flux density, susceptibility, heat capacity, and their cross-correlations.

cond-mat.dis-nn↗

Phase ordering and roughening on growing films

We study the interplay between surface roughening and phase separation during the growth of binary films. Already in 1+1 dimension, we find a variety of different scaling behaviors depending on how the two phenomena are coupled. In the most interesting case, related to the advection of a passive scalar in a velocity field, nontrivial scaling exponents are obtained in simulations.

cond-mat.stat-mech↗

Instability and Fluctuations of Flux Lines with Point Impurities in a Parallel Current

A parallel current can destabilize a single flux line (FL), or an array of FLs. We consider the effects of pinning by point impurities on this instability. The presence of impurities destroys the long-range order of a flux lattice, leading to the so called Bragg glass (BrG) phase. We first show that the long-range topological order of the BrG is also destroyed by a parallel current. Nonetheless, some degree of short-range order should remain, whose destruction by thermal and impurity fluctuations, as well as the current, is studied here. To this end, we employ a cage model for a single FL in the presence of impurities and current, and study it analytically (by replica variational methods), and numerically (using a transfer matrix technique). The results are in good agreement, and in conjunction with a Lindemann criterion, provide the boundary in the magnetic field--temperature plane for destruction of short-range order. In all cases, we find that the addition of impurities or current (singly or in combination) leads to further increase in equilibrium FL fluctuations. Thus pinning to point impurities does not stabilize FLs in a parallel current $j_z$, although the onset of this instability is much delayed due to large potential barriers that diverge as $j_z^{-μ}$.

cond-mat.stat-mech↗

Elasticity and melting of vortex crystals in anisotropic superconductors: Beyond the continuum regime

The elastic moduli of vortex crystals in anisotropic superconductors are frequently involved in the investigation of their phase diagram and transport properties. We provide a detailed analysis of the harmonic eigenvalues (normal modes) of the vortex lattice for general values of the magnetic field strength, going beyond the elastic continuum regime. The detailed behavior of these wavevector-dependent eigenvalues within the Brillouin zone (BZ), is compared with several frequently used approximations that we also recalculate. Throughout the BZ, transverse modes are less costly than their longitudinal counterparts, and there is an angular dependence which becomes more marked close to the zone boundary. Based on these results, we propose an analytic correction to the nonlocal continuum formulas which fits quite well the numerical behavior of the eigenvalues in the London regime. We use this approximate expression to calculate thermal fluctuations and the full melting line (according to Lindeman's criterion) for various values of the anisotropy parameter.

cond-mat.supr-con↗