arXiv subjects

Mengjia Yu

Publications and source records attributed to Mengjia Yu.

4 recordsLinked to original sources

arXiv2023

Enrollment Forecast for Clinical Trials at the Planning Phase with Study-Level Historical Data

Given progressive developments and demands on clinical trials, accurate enrollment timeline forecasting is increasingly crucial for both strategic decision-making and trial execution excellence. Naive approach assumes flat rates on enrollment using average of historical data, while traditional statistical approach applies simple Poisson-Gamma model using timeinvariant rates for site activation and subject recruitment. Both of them are lack of nontrivial factors such as time and location. We propose a novel two-segment statistical approach based on Quasi-Poisson regression for subject accrual rate and Poisson process for subject enrollment and site activation. The input study-level data is publicly accessible and it can be integrated with historical study data from user's organization to prospectively predict enrollment timeline. The new framework is neat and accurate compared to preceding works. We validate the performance of our proposed enrollment model and compare the results with other frameworks on 7 curated studies.

stat.AP↗

arXiv2023

Enrollment Forecast for Clinical Trials at the Portfolio Planning Phase Based on Site-Level Historical Data

Accurate forecast of a clinical trial enrollment timeline at the planning phase is of great importance to both corporate strategic planning and trial operational excellence. While predictions of key milestones such as last subject first dose date can inform strategic decision-making, detailed predictive insights (e.g., median number of enrolled subjects by month for a country) can facilitate the planning of clinical trial operation activities and promote execution excellence. The naive approach often calculates an average enrollment rate from historical data and generates an inaccurate prediction based on a linear trend with the average rate. The traditional statistical approach utilizes the simple Poisson-Gamma model that assumes time-invariant site activation rates and it can fail to capture the underlying nonlinear patterns (e.g., up and down site activation pattern). We present a novel statistical approach based on generalized linear mixed-effects models and the use of non-homogeneous Poisson processes through Bayesian framework to model the country initiation, site activation and subject enrollment sequentially in a systematic fashion. We validate the performance of our proposed enrollment modeling framework based on a set of preselected 25 studies from four therapeutic areas. Our modeling framework shows a substantial improvement in prediction accuracy in comparison to the traditional statistical approach. Furthermore, we show that our modeling and simulation approach calibrates the data variability appropriately and gives correct coverage rates for prediction intervals of various nominal levels. Finally, we demonstrate the use of our approach to generate the predicted enrollment curves through time with confidence bands overlaid.

stat.AP↗

arXiv2019

A robust bootstrap change point test for high-dimensional location parameter

We consider the problem of change point detection for high-dimensional distributions in a location family when the dimension can be much larger than the sample size. In change point analysis, the widely used cumulative sum (CUSUM) statistics are sensitive to outliers and heavy-tailed distributions. In this paper, we propose a robust, tuning-free (i.e., fully data-dependent), and easy-to-implement change point test that enjoys strong theoretical guarantees. To achieve the robust purpose in a nonparametric setting, we formulate the change point detection in the multivariate $U$-statistics framework with anti-symmetric and nonlinear kernels. Specifically, the within-sample noise is canceled out by anti-symmetry of the kernel, while the signal distortion under certain nonlinear kernels can be controlled such that the between-sample change point signal is magnitude preserving. A (half) jackknife multiplier bootstrap (JMB) tailored to the change point detection setting is proposed to calibrate the distribution of our $\ell^{\infty}$-norm aggregated test statistic. Subject to mild moment conditions on kernels, we derive the uniform rates of convergence for the JMB to approximate the sampling distribution of the test statistic, and analyze its size and power properties. Extensions to multiple change point testing and estimation are discussed with illustration from numerical studies.

math.ST↗

arXiv2017

Finite sample change point inference and identification for high-dimensional mean vectors

Cumulative sum (CUSUM) statistics are widely used in the change point inference and identification. For the problem of testing for existence of a change point in an independent sample generated from the mean-shift model, we introduce a Gaussian multiplier bootstrap to calibrate critical values of the CUSUM test statistics in high dimensions. The proposed bootstrap CUSUM test is fully data-dependent and it has strong theoretical guarantees under arbitrary dependence structures and mild moment conditions. Specifically, we show that with a boundary removal parameter the bootstrap CUSUM test enjoys the uniform validity in size under the null and it achieves the minimax separation rate under the sparse alternatives when the dimension $p$ can be larger than the sample size $n$. Once a change point is detected, we estimate the change point location by maximizing the $\ell^{\infty}$-norm of the generalized CUSUM statistics at two different weighting scales corresponding to covariance stationary and non-stationary CUSUM statistics. For both estimators, we derive their rates of convergence and show that dimension impacts the rates only through logarithmic factors, which implies that consistency of the CUSUM estimators is possible when $p$ is much larger than $n$. In the presence of multiple change points, we propose a principled bootstrap-assisted binary segmentation (BABS) algorithm to dynamically adjust the change point detection rule and recursively estimate their locations. We derive its rate of convergence under suitable signal separation and strength conditions. The results derived in this paper are non-asymptotic and we provide extensive simulation studies to assess the finite sample performance. The empirical evidence shows an encouraging agreement with our theoretical results.

math.ST↗