arXiv subjects

Mengnan Du

Publications and source records attributed to Mengnan Du.

At least 73 records · Page 4Linked to original sources

arXiv2025

Health-LLM: Personalized Retrieval-Augmented Disease Prediction System

Recent advancements in artificial intelligence (AI), especially large language models (LLMs), have significantly advanced healthcare applications and demonstrated potentials in intelligent medical treatment. However, there are conspicuous challenges such as vast data volumes and inconsistent symptom characterization standards, preventing full integration of healthcare AI systems with individual patients' needs. To promote professional and personalized healthcare, we propose an innovative framework, Heath-LLM, which combines large-scale feature extraction and medical knowledge trade-off scoring. Compared to traditional health management applications, our system has three main advantages: (1) It integrates health reports and medical knowledge into a large model to ask relevant questions to large language model for disease prediction; (2) It leverages a retrieval augmented generation (RAG) mechanism to enhance feature extraction; (3) It incorporates a semi-automated feature updating framework that can merge and delete features to improve accuracy of disease prediction. We experiment on a large number of health reports to assess the effectiveness of Health-LLM system. The results indicate that the proposed system surpasses the existing ones and has the potential to significantly advance disease prediction and personalized health management.

cs.CL↗

arXiv2025

Massive Values in Self-Attention Modules are the Key to Contextual Knowledge Understanding

Large language models (LLMs) have achieved remarkable success in contextual knowledge understanding. In this paper, we show that these concentrated massive values consistently emerge in specific regions of attention queries (Q) and keys (K) while not having such patterns in values (V) in various modern transformer-based LLMs (Q, K, and V mean the representations output by the query, key, and value layers respectively). Through extensive experiments, we further demonstrate that these massive values play a critical role in interpreting contextual knowledge (knowledge obtained from the current context window) rather than in retrieving parametric knowledge stored within the model's parameters. Our further investigation of quantization strategies reveals that ignoring these massive values leads to a pronounced drop in performance on tasks requiring rich contextual understanding, aligning with our analysis. Finally, we trace the emergence of concentrated massive values and find that such concentration is caused by Rotary Positional Encoding (RoPE), which has appeared since the first layers. These findings shed new light on how Q and K operate in LLMs and offer practical insights for model design and optimization. The Code is Available at https://github.com/MingyuJ666/Rope_with_LLM.

cs.CL↗

arXiv2025

Usable XAI: 10 Strategies Towards Exploiting Explainability in the LLM Era

Explainable AI (XAI) refers to techniques that provide human-understandable insights into the workings of AI models. Recently, the focus of XAI is being extended toward explaining Large Language Models (LLMs). This extension calls for a significant transformation in the XAI methodologies for two reasons. First, many existing XAI methods cannot be directly applied to LLMs due to their complexity and advanced capabilities. Second, as LLMs are increasingly deployed in diverse applications, the role of XAI shifts from merely opening the ``black box'' to actively enhancing the productivity and applicability of LLMs in real-world settings. Meanwhile, the conversation and generation abilities of LLMs can reciprocally enhance XAI. Therefore, in this paper, we introduce Usable XAI in the context of LLMs by analyzing (1) how XAI can explain and improve LLM-based AI systems and (2) how XAI techniques can be improved by using LLMs. We introduce 10 strategies, introducing the key techniques for each and discussing their associated challenges. We also provide case studies to demonstrate how to obtain and leverage explanations. The code used in this paper can be found at: https://github.com/JacksonWuxs/UsableXAI_LLM.

cs.LG↗

arXiv2025

Beyond Single Concept Vector: Modeling Concept Subspace in LLMs with Gaussian Distribution

Probing learned concepts in large language models (LLMs) is crucial for understanding how semantic knowledge is encoded internally. Training linear classifiers on probing tasks is a principle approach to denote the vector of a certain concept in the representation space. However, the single vector identified for a concept varies with both data and training, making it less robust and weakening its effectiveness in real-world applications. To address this challenge, we propose an approach to approximate the subspace representing a specific concept. Built on linear probing classifiers, we extend the concept vectors into Gaussian Concept Subspace (GCS). We demonstrate GCS's effectiveness through measuring its faithfulness and plausibility across multiple LLMs with different sizes and architectures. Additionally, we use representation intervention tasks to showcase its efficacy in real-world applications such as emotion steering. Experimental results indicate that GCS concept vectors have the potential to balance steering performance and maintaining the fluency in natural language generation tasks.

cs.CL↗

arXiv2025

Invisible Backdoor Attack against Self-supervised Learning

Self-supervised learning (SSL) models are vulnerable to backdoor attacks. Existing backdoor attacks that are effective in SSL often involve noticeable triggers, like colored patches or visible noise, which are vulnerable to human inspection. This paper proposes an imperceptible and effective backdoor attack against self-supervised models. We first find that existing imperceptible triggers designed for supervised learning are less effective in compromising self-supervised models. We then identify this ineffectiveness is attributed to the overlap in distributions between the backdoor and augmented samples used in SSL. Building on this insight, we design an attack using optimized triggers disentangled with the augmented transformation in the SSL, while remaining imperceptible to human vision. Experiments on five datasets and six SSL algorithms demonstrate our attack is highly effective and stealthy. It also has strong resistance to existing backdoor defenses. Our code can be found at https://github.com/Zhang-Henry/INACTIVE.

cs.CV↗

arXiv2025

From Commands to Prompts: LLM-based Semantic File System for AIOS

Large language models (LLMs) have demonstrated significant potential in the development of intelligent applications and systems such as LLM-based agents and agent operating systems (AIOS). However, when these applications and systems interact with the underlying file system, the file system still remains the traditional paradigm: reliant on manual navigation through precise commands. This paradigm poses a bottleneck to the usability of these systems as users are required to navigate complex folder hierarchies and remember cryptic file names. To address this limitation, we propose an LLM-based semantic file system ( LSFS ) for prompt-driven file management. Unlike conventional approaches, LSFS incorporates LLMs to enable users or agents to interact with files through natural language prompts, facilitating semantic file management. At the macro-level, we develop a comprehensive API set to achieve semantic file management functionalities, such as semantic file retrieval, file update monitoring and summarization, and semantic file rollback). At the micro-level, we store files by constructing semantic indexes for them, design and implement syscalls of different semantic operations (e.g., CRUD, group by, join) powered by vector database. Our experiments show that LSFS offers significant improvements over traditional file systems in terms of user convenience, the diversity of supported functions, and the accuracy and efficiency of file operations. Additionally, with the integration of LLM, our system enables more intelligent file management tasks, such as content summarization and version comparison, further enhancing its capabilities.

cs.HC↗

arXiv2025

Aligning Large Language Models and Geometric Deep Models for Protein Representation

Latent representation alignment has become a foundational technique for constructing multimodal large language models (MLLM) by mapping embeddings from different modalities into a shared space, often aligned with the embedding space of large language models (LLMs) to enable effective cross-modal understanding. While preliminary protein-focused MLLMs have emerged, they have predominantly relied on heuristic approaches, lacking a fundamental understanding of optimal alignment practices across representations. In this study, we explore the alignment of multimodal representations between LLMs and Geometric Deep Models (GDMs) in the protein domain. We comprehensively evaluate three state-of-the-art LLMs (Gemma2-2B, LLaMa3.1-8B, and LLaMa3.1-70B) with four protein-specialized GDMs (GearNet, GVP, ScanNet, GAT). Our work examines alignment factors from both model and protein perspectives, identifying challenges in current alignment methodologies and proposing strategies to improve the alignment process. Our key findings reveal that GDMs incorporating both graph and 3D structural information align better with LLMs, larger LLMs demonstrate improved alignment capabilities, and protein rarity significantly impacts alignment performance. We also find that increasing GDM embedding dimensions, using two-layer projection heads, and fine-tuning LLMs on protein-specific data substantially enhance alignment quality. These strategies offer potential enhancements to the performance of protein-related multimodal models. Our code and data are available at https://github.com/Tizzzzy/LLM-GDM-alignment.

cs.LG↗

arXiv2025

DBR: Divergence-Based Regularization for Debiasing Natural Language Understanding Models

Pre-trained language models (PLMs) have achieved impressive results on various natural language processing tasks. However, recent research has revealed that these models often rely on superficial features and shortcuts instead of developing a genuine understanding of language, especially for natural language understanding (NLU) tasks. Consequently, the models struggle to generalize to out-of-domain data. In this work, we propose Divergence Based Regularization (DBR) to mitigate this shortcut learning behavior. Our method measures the divergence between the output distributions for original examples and examples where shortcut tokens have been masked. This process prevents the model's predictions from being overly influenced by shortcut features or biases. We evaluate our model on three NLU tasks and find that it improves out-of-domain performance with little loss of in-domain accuracy. Our results demonstrate that reducing the reliance on shortcuts and superficial features can enhance the generalization ability of large pre-trained language models.

cs.CL↗

arXiv2025

SAIF: A Sparse Autoencoder Framework for Interpreting and Steering Instruction Following of Language Models

The ability of large language models (LLMs) to follow instructions is crucial for their practical applications, yet the underlying mechanisms remain poorly understood. This paper presents a novel framework that leverages sparse autoencoders (SAE) to interpret how instruction following works in these models. We demonstrate how the features we identify can effectively steer model outputs to align with given instructions. Through analysis of SAE latent activations, we identify specific latents responsible for instruction following behavior. Our findings reveal that instruction following capabilities are encoded by a distinct set of instruction-relevant SAE latents. These latents both show semantic proximity to relevant instructions and demonstrate causal effects on model behavior. Our research highlights several crucial factors for achieving effective steering performance: precise feature identification, the role of final layer, and optimal instruction positioning. Additionally, we demonstrate that our methodology scales effectively across SAEs and LLMs of varying sizes.

cs.LG↗

arXiv2025

Exploring Concept Depth: How Large Language Models Acquire Knowledge and Concept at Different Layers?

Large language models (LLMs) have shown remarkable performances across a wide range of tasks. However, the mechanisms by which these models encode tasks of varying complexities remain poorly understood. In this paper, we explore the hypothesis that LLMs process concepts of varying complexities in different layers, introducing the idea of "Concept Depth" to suggest that more complex concepts are typically acquired in deeper layers. Specifically, we categorize concepts based on their level of abstraction, defining them in the order of increasing complexity within factual, emotional, and inferential tasks. We conduct extensive probing experiments using layer-wise representations across various LLM families (Gemma, LLaMA, Qwen) on various datasets spanning the three domains of tasks. Our findings reveal that models could efficiently conduct probing for simpler tasks in shallow layers, and more complex tasks typically necessitate deeper layers for accurate understanding. Additionally, we examine how external factors, such as adding noise to the input and quantizing the model weights, might affect layer-wise representations. Our findings suggest that these factors can impede the development of a conceptual understanding of LLMs until deeper layers are explored. We hope that our proposed concept and experimental insights will enhance the understanding of the mechanisms underlying LLMs. Our codes are available at https://github.com/Luckfort/CD.

cs.CL↗

arXiv2025

Exploring Multilingual Probing in Large Language Models: A Cross-Language Analysis

Probing techniques for large language models (LLMs) have primarily focused on English, overlooking the vast majority of the world's languages. In this paper, we extend these probing methods to a multilingual context, investigating the behaviors of LLMs across diverse languages. We conduct experiments on several open-source LLM models, analyzing probing accuracy, trends across layers, and similarities between probing vectors for multiple languages. Our key findings reveal: (1) a consistent performance gap between high-resource and low-resource languages, with high-resource languages achieving significantly higher probing accuracy; (2) divergent layer-wise accuracy trends, where high-resource languages show substantial improvement in deeper layers similar to English; and (3) higher representational similarities among high-resource languages, with low-resource languages demonstrating lower similarities both among themselves and with high-resource languages. These results highlight significant disparities in LLMs' multilingual capabilities and emphasize the need for improved modeling of low-resource languages.

cs.CL↗

arXiv2024

Time Series Forecasting with LLMs: Understanding and Enhancing Model Capabilities

Large language models (LLMs) have been applied in many fields and have developed rapidly in recent years. As a classic machine learning task, time series forecasting has recently been boosted by LLMs. Recent works treat large language models as \emph{zero-shot} time series reasoners without further fine-tuning, which achieves remarkable performance. However, there are some unexplored research problems when applying LLMs for time series forecasting under the zero-shot setting. For instance, the LLMs' preferences for the input time series are less understood. In this paper, by comparing LLMs with traditional time series forecasting models, we observe many interesting properties of LLMs in the context of time series forecasting. First, our study shows that LLMs perform well in predicting time series with clear patterns and trends, but face challenges with datasets lacking periodicity. This observation can be explained by the ability of LLMs to recognize the underlying period within datasets, which is supported by our experiments. In addition, the input strategy is investigated, and it is found that incorporating external knowledge and adopting natural language paraphrases substantially improve the predictive performance of LLMs for time series. Overall, our study contributes insight into LLMs' advantages and limitations in time series forecasting under different conditions.

cs.CL↗

arXiv2024

Language Ranker: A Metric for Quantifying LLM Performance Across High and Low-Resource Languages

The development of Large Language Models (LLMs) relies on extensive text corpora, which are often unevenly distributed across languages. This imbalance results in LLMs performing significantly better on high-resource languages like English, German, and French, while their capabilities in low-resource languages remain inadequate. Currently, there is a lack of quantitative methods to evaluate the performance of LLMs in these low-resource languages. To address this gap, we propose the Language Ranker, an intrinsic metric designed to benchmark and rank languages based on LLM performance using internal representations. By comparing the LLM's internal representation of various languages against a baseline derived from English, we can assess the model's multilingual capabilities in a robust and language-agnostic manner. Our analysis reveals that high-resource languages exhibit higher similarity scores with English, demonstrating superior performance, while low-resource languages show lower similarity scores, underscoring the effectiveness of our metric in assessing language-specific capabilities. Besides, the experiments show that there is a strong correlation between the LLM's performance in different languages and the proportion of those languages in its pre-training corpus. These insights underscore the efficacy of the Language Ranker as a tool for evaluating LLM performance across different languages, particularly those with limited resources.

cs.CL↗

arXiv2024

Comparative Analysis of Demonstration Selection Algorithms for LLM In-Context Learning

In-context learning can help Large Language Models (LLMs) to adapt new tasks without additional training. However, this performance heavily depends on the quality of the demonstrations, driving research into effective demonstration selection algorithms to optimize this process. These algorithms assist users in selecting the best $k$ input-label pairs (demonstration examples) based on a given test input, enabling LLMs to in-context learn the relationship between the provided examples and the test inputs. Despite all the proposed demonstration selection algorithms, their efficiency and effectiveness remain unclear. This lack of clarity make it difficult to apply these algorithms in real-world scenarios and poses challenges for future research aimed at developing improved methods. This paper revisits six proposed algorithms, evaluating them on five datasets from both efficiency and effectiveness perspectives. Our experiments reveal significant variations in algorithm performance across different tasks, with some methods struggling to outperform random selection in certain scenarios. We also find that increasing the number of demonstrations does not always lead to better performance, and that there are often trade-offs between accuracy and computational efficiency. Our code is available at https://github.com/Tizzzzy/Demonstration_Selection_Overview.

cs.CL↗

arXiv2024

ProxiMix: Enhancing Fairness with Proximity Samples in Subgroups

Many bias mitigation methods have been developed for addressing fairness issues in machine learning. We found that using linear mixup alone, a data augmentation technique, for bias mitigation, can still retain biases present in dataset labels. Research presented in this paper aims to address this issue by proposing a novel pre-processing strategy in which both an existing mixup method and our new bias mitigation algorithm can be utilized to improve the generation of labels of augmented samples, which are proximity aware. Specifically, we proposed ProxiMix which keeps both pairwise and proximity relationships for fairer data augmentation. We conducted thorough experiments with three datasets, three ML models, and different hyperparameters settings. Our experimental results showed the effectiveness of ProxiMix from both fairness of predictions and fairness of recourse perspectives.

cs.LG↗

arXiv2024

Data-centric NLP Backdoor Defense from the Lens of Memorization

Backdoor attack is a severe threat to the trustworthiness of DNN-based language models. In this paper, we first extend the definition of memorization of language models from sample-wise to more fine-grained sentence element-wise (e.g., word, phrase, structure, and style), and then point out that language model backdoors are a type of element-wise memorization. Through further analysis, we find that the strength of such memorization is positively correlated to the frequency of duplicated elements in the training dataset. In conclusion, duplicated sentence elements are necessary for successful backdoor attacks. Based on this, we propose a data-centric defense. We first detect trigger candidates in training data by finding memorizable elements, i.e., duplicated elements, and then confirm real triggers by testing if the candidates can activate backdoor behaviors (i.e., malicious elements). Results show that our method outperforms state-of-the-art defenses in defending against different types of NLP backdoors.

cs.CL↗

arXiv2024

Global-local Fourier Neural Operator for Accelerating Coronal Magnetic Field Model

Exploring the outer atmosphere of the sun has remained a significant bottleneck in astrophysics, given the intricate magnetic formations that significantly influence diverse solar events. Magnetohydrodynamics (MHD) simulations allow us to model the complex interactions between the sun's plasma, magnetic fields, and the surrounding environment. However, MHD simulation is extremely time-consuming, taking days or weeks for simulation. The goal of this study is to accelerate coronal magnetic field simulation using deep learning, specifically, the Fourier Neural Operator (FNO). FNO has been proven to be an ideal tool for scientific computing and discovery in the literature. In this paper, we proposed a global-local Fourier Neural Operator (GL-FNO) that contains two branches of FNOs: the global FNO branch takes downsampled input to reconstruct global features while the local FNO branch takes original resolution input to capture fine details. The performance of the GLFNO is compared with state-of-the-art deep learning methods, including FNO, U-NO, U-FNO, Vision Transformer, CNN-RNN, and CNN-LSTM, to demonstrate its accuracy, computational efficiency, and scalability. Furthermore, physics analysis from domain experts is also performed to demonstrate the reliability of GL-FNO. The results demonstrate that GL-FNO not only accelerates the MHD simulation (a few seconds for prediction, more than \times 20,000 speed up) but also provides reliable prediction capabilities, thus greatly contributing to the understanding of space weather dynamics. Our code implementation is available at https://github.com/Yutao-0718/GL-FNO

astro-ph.SR↗

arXiv2024

Deep Computer Vision for Solar Physics Big Data: Opportunities and Challenges

With recent missions such as advanced space-based observatories like the Solar Dynamics Observatory (SDO) and Parker Solar Probe, and ground-based telescopes like the Daniel K. Inouye Solar Telescope (DKIST), the volume, velocity, and variety of data have made solar physics enter a transformative era as solar physics big data (SPBD). With the recent advancement of deep computer vision, there are new opportunities in SPBD for tackling problems that were previously unsolvable. However, there are new challenges arising due to the inherent characteristics of SPBD and deep computer vision models. This vision paper presents an overview of the different types of SPBD, explores new opportunities in applying deep computer vision to SPBD, highlights the unique challenges, and outlines several potential future research directions.

cs.CV↗