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Meryem Abbad Andaloussi

Publications and source records attributed to Meryem Abbad Andaloussi.

2 recordsLinked to original sources

An MRI-informed poromechanical model for organ-scale prediction of glioma growth

Gliomas constitute one of the most aggressive and heterogeneous forms of brain tumors, posing major challenges for understanding their biology and developing effective treatments. Animal models enable the collection of rich longitudinal datasets describing tumor dynamics, which can be integrated within mathematical models to elucidate the biological mechanisms governing tumor growth. While most formulations rely on reaction-diffusion systems with limited insight on tissue deformation and fluid transport, we propose a magnetic resonance imaging (MRI)-informed, poroelastic model to describe C6 glioma growth in rats. We use data from animals (n=4) that were imaged five times after intracranial injection of cancer cells. Each MRI dataset includes (i) anatomical T1-weighted data for brain and tumor segmentation and to assign mechanical properties; (ii) diffusion-weighted MRI, which enables estimation of the fraction of each voxel that is tumor; and (iii) dynamic contrast-enhanced MRI, which informs permeability as well as vascular and liquid fraction maps. Using finite-element simulations, model calibration for each rat uses the Levenberg-Marquardt method informed by the first three MRI datasets. Tumor forecasts are validated by assessing model-data agreement on the remaining two MRI datasets. Our results show relative tumor volume errors between 0.94 percent and 11.27 percent at calibration, and prediction errors between 4.73 percent and 36.03 percent. Additionally, Dice scores ranged from 0.80 to 0.93 during calibration, and from 0.75 to 0.93 during validation. Thus, our results suggest that our poromechanical model can describe C6 glioma growth. This study provides a first step toward a patient-specific, multiscale model of the spatiotemporal poromechanics underlying glioma progression and therapeutic response.

physics.comp-ph↗

Exploring Adult Glioma through MRI: A Review of Publicly Available Datasets to Guide Efficient Image Analysis

Publicly available data is essential for the progress of medical image analysis, in particular for crafting machine learning models. Glioma is the most common group of primary brain tumors, and magnetic resonance imaging (MRI) is a widely used modality in their diagnosis and treatment. However, the availability and quality of public datasets for glioma MRI are not well known. In this review, we searched for public datasets for glioma MRI using Google Dataset Search, The Cancer Imaging Archive (TCIA), and Synapse. A total of 28 datasets published between 2005 and May 2024 were found, containing 62019 images from 5515 patients. We analyzed the characteristics of these datasets, such as the origin, size, format, annotation, and accessibility. Additionally, we examined the distribution of tumor types, grades, and stages among the datasets. The implications of the evolution of the WHO classification on tumors of the brain are discussed, in particular the 2021 update that significantly changed the definition of glioblastoma. Additionally, potential research questions that could be explored using these datasets were highlighted, such as tumor evolution through malignant transformation, MRI normalization, and tumor segmentation. Interestingly, only two datasets among the 28 studied reflect the current WHO classification. This review provides a comprehensive overview of the publicly available datasets for glioma MRI currently at our disposal, providing aid to medical image analysis researchers in their decision-making on efficient dataset choice.

eess.IV↗