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Michael Anderson

Publications and source records attributed to Michael Anderson.

23 records · Page 2Linked to original sources

On orienting edges of unstructured two- and three-dimensional meshes

Finite element codes typically use data structures that represent unstructured meshes as collections of cells, faces, and edges, each of which require associated coordinate systems. One then needs to store how the coordinate system of each edge relates to that of neighboring cells. On the other hand, we can simplify data structures and algorithms if we can a priori orient coordinate systems in such a way that the coordinate systems on the edges follows uniquely from those on the cells \textit{by rule}. Such rules require that \textit{every} unstructured mesh allows assigning directions to edges that satisfy the convention in adjacent cells. We show that the convention chosen for unstructured quadrilateral meshes in the \texttt{deal.II} library always allows to orient meshes. It can therefore be used to make codes simpler, faster, and less bug prone. We present an algorithm that orients meshes in $O(N)$ operations. We then show that consistent orientations are not always possible for 3d hexahedral meshes. Thus, cells generally need to store the direction of adjacent edges, but our approach also allows the characterization of cases where this is not necessary. The 3d extension of our algorithm either orients edges consistently, or aborts, both within $O(N)$ steps.

math.NA↗

Multiple Testing with Heterogeneous Multinomial Distributions

False discovery rate (FDR) procedures provide misleading inference when testing multiple null hypotheses with heterogeneous multinomial data. For example, in the motivating study the goal is to identify species of bacteria near the roots of wheat plants (rhizobacteria) that are associated with productivity, but standard procedures discover the most abundant species even when the association is weak or negligible, and fail to discover strong associations when species are not abundant. Consequently, a list of abundant species is produced by the multiple testing procedure even though the goal was to provide a list of producitivity-associated species. This paper provides an FDR method based on a mixture of multinomial distributions and shows that it tends to discover more non-negligible effects and fewer negligible effects when the data are heterogeneous across tests. The proposed method and competing methods are applied to the motivating data. The new method identifies more species that are strongly associated with productivity and identifies fewer species that are weakly associated with productivity.

stat.ME↗

The Emu Sky Knowledge of the Kamilaroi and Euahlayi Peoples

This paper presents a detailed study of the knowledge of the Kamilaroi and Euahlayi peoples about the Emu in the Sky. This study was done with ethnographic data that was not previously reported in detail. We surveyed the literature to find that there are widespread reports of an Emu in the Sky across Australian Aboriginal language groups, but little detailed knowledge available in the literature. This paper reports and describes a comprehensive Kamilaroi and Euahlayi knowledge of the Emu in the Sky and its cultural context.

physics.hist-ph↗

On the Reliability of RAID Systems: An Argument for More Check Drives

In this paper we address issues of reliability of RAID systems. We focus on "big data" systems with a large number of drives and advanced error correction schemes beyond \RAID{6}. Our RAID paradigm is based on Reed-Solomon codes, and thus we assume that the RAID consists of $N$ data drives and $M$ check drives. The RAID fails only if the combined number of failed drives and sector errors exceeds $M$, a property of Reed-Solomon codes. We review a number of models considered in the literature and build upon them to construct models usable for a large number of data and check drives. We attempt to account for a significant number of factors that affect RAID reliability, such as drive replacement or lack thereof, mistakes during service such as replacing the wrong drive, delayed repair, and the finite duration of RAID reconstruction. We evaluate the impact of sector failures that do not result in drive replacement. The reader who needs to consider large $M$ and $N$ will find applicable mathematical techniques concisely summarized here, and should be able to apply them to similar problems. Most methods are based on the theory of continuous time Markov chains, but we move beyond this framework when we consider the fixed time to rebuild broken hard drives, which we model using systems of delay and partial differential equations. One universal statement is applicable across various models: increasing the number of check drives in all cases increases the reliability of the system, and is vastly superior to other approaches of ensuring reliability such as mirroring.

cs.PF↗

Shock-driven hydrodynamic instability induced by particle seeding

We report an experimental observation of an instability in gas of constant density (air) with an initial non-uniform seeding of small droplets that develops as a planar shock wave passes through the gas-droplet mix. The seeding non-uniformity is produced by vertical injection of a slow-moving jet of air pre-mixed with glycol droplets into the test section of a shock tube, with the plane of the shock parallel to the axis of the jet. After the shock passage, we observe development of two counter-rotating vortices in the plane normal to that axis. The physical mechanism of the instability we observe is peculiar to multiphase flow, where the shock acceleration causes the second (embedded) phase to move with respect to the embedding medium. With sufficient seeding concentration, this leads to entrainment of the embedding phase that acquires a relative velocity dependent on the initial seeding, resulting in vortex formation in the flow.

physics.flu-dyn↗