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Michael Quellmalz

Publications and source records attributed to Michael Quellmalz.

At least 19 recordsLinked to original sources

A Discrete Radon Transform Based on the Area of Cube-Plane Intersection

The Radon transform is a fundamental tool for analyzing data in tomographic imaging, optimal transport, crystallography, and geometric analysis. Numerical computations require an accurate discretization. To deal with voxelized images and objects, we derive a closed-form, piecewise polynomial expression for the Radon transform of an axis-aligned cube in arbitrary dimension $d$. Building on this formula, we propose a discrete Radon transform in $\mathbb{R}^d$ that is both analytically exact for voxelized data and computationally efficient. For improved numerical stability, we introduce a regularized variant replacing the Radon transform of a cube, i.e.\ the $(d-1)$-dimensional area of the intersection between that cube and a hyperplane, by the $d$-dimensional volume of the intersection between the cube and a thin slab around the hyperplane. Numerical experiments demonstrate the effectiveness of the proposed approach in several applications including 3D shape matching, classification, and sliced Wasserstein barycenters. The computational efficiency in higher dimensions is verified by a comparison with Monte Carlo integration.

math.NA

Application and Evaluation of the Common Circles Method

We investigate the application of the common circle method for estimating sample motion in optical diffraction tomography (ODT) of sub-millimeter sized biological tissue. When samples are confined via contact-free acoustical force fields, their motion must be estimated from the captured images. The common circle method identifies intersections of Ewald spheres in Fourier space to determine rotational motion. This paper presents a practical implementation, incorporating temporal consistency constraints to achieve stable reconstructions. Our results on both simulated and real-world data demonstrate that the common circle method provides a computationally efficient alternative to full optimization methods for motion detection.

math.NA

HOT-POT: Optimal Transport for Sparse Stereo Matching

Stereo vision between images faces a range of challenges, including occlusions, motion, and camera distortions, across applications in autonomous driving, robotics, and face analysis. Due to parameter sensitivity, further complications arise for stereo matching with sparse features, such as facial landmarks. To overcome this ill-posedness and enable unsupervised sparse matching, we consider line constraints of the camera geometry from an optimal transport (OT) viewpoint. Formulating camera-projected points as (half)lines, we propose the use of the classical epipolar distance as well as a 3D ray distance to quantify matching quality. Employing these distances as a cost function of a (partial) OT problem, we arrive at efficiently solvable assignment problems. Moreover, we extend our approach to unsupervised object matching by formulating it as a hierarchical OT problem. The resulting algorithms allow for efficient feature and object matching, as demonstrated in our numerical experiments. Here, we focus on applications in facial analysis, where we aim to match distinct landmarking conventions.

cs.CV

Smoothed Distance Kernels for MMDs and Applications in Wasserstein Gradient Flows

Negative distance kernels $K(x,y) := - \|x-y\|$ were used in the definition of maximum mean discrepancies (MMDs) in statistics and lead to favorable numerical results in various applications. In particular, so-called slicing techniques for handling high-dimensional kernel summations profit from the simple parameter-free structure of the distance kernel. However, due to its non-smoothness in $x=y$, most of the classical theoretical results, e.g. on Wasserstein gradient flows of the corresponding MMD functional do not longer hold true. In this paper, we propose a new kernel which keeps the favorable properties of the negative distance kernel as being conditionally positive definite of order one with a nearly linear increase towards infinity and a simple slicing structure, but is Lipschitz differentiable now. Our construction is based on a simple 1D smoothing procedure of the absolute value function followed by a Riemann-Liouville fractional integral transform. Numerical results demonstrate that the new kernel performs similarly well as the negative distance kernel in gradient descent methods, but now with theoretical guarantees.

stat.ML

Fast Summation of Radial Kernels via QMC Slicing

The fast computation of large kernel sums is a challenging task, which arises as a subproblem in any kernel method. We approach the problem by slicing, which relies on random projections to one-dimensional subspaces and fast Fourier summation. We prove bounds for the slicing error and propose a quasi-Monte Carlo (QMC) approach for selecting the projections based on spherical quadrature rules. Numerical examples demonstrate that our QMC-slicing approach significantly outperforms existing methods like (QMC-)random Fourier features, orthogonal Fourier features or non-QMC slicing on standard test datasets.

math.NA

Slicing of Radial Functions: a Dimension Walk in the Fourier Space

Computations in high-dimensional spaces can often be realized only approximately, using a certain number of projections onto lower dimensional subspaces or sampling from distributions. In this paper, we are interested in pairs of real-valued functions $(F,f)$ on $[0,\infty)$ that are related by the projection/slicing formula $F (\| x \|) = \mathbb E_{\xi} \big[ f \big(|\langle x,\xi \rangle| \big) \big]$ for $x\in\mathbb R^d$, where the expectation value is taken over uniformly distributed directions in $\mathbb R^d$. While it is known that $F$ can be obtained from $f$ by an Abel-like integral formula, we construct conversely $f$ from given $F$ using their Fourier transforms. First, we consider the relation between $F$ and $f$ for radial functions $F(\| \cdot\| )$ that are Fourier transforms of $L^1$ functions. Besides $d$- and one-dimensional Fourier transforms, it relies on a rotation operator, an averaging operator and a multiplication operator to manage the walk from $d$ to one dimension in the Fourier space. Then, we generalize the results to tempered distributions, where we are mainly interested in radial regular tempered distributions. Based on Bochner's theorem, this includes positive definite functions $F(\| \cdot\| )$ and, by the theory of fractional derivatives, also functions $F$ whose derivative of order $\lfloor d/2\rfloor$ is slowly increasing and continuous.

math.NA

Generalized Fourier Diffraction Theorem and Filtered Backpropagation for Tomographic Reconstruction

This paper concerns diffraction-tomographic reconstruction of an object characterized by its scattering potential. We establish a rigorous generalization of the Fourier diffraction theorem in arbitrary dimension, giving a precise relation in the Fourier domain between measurements of the scattered wave and reconstructions of the scattering potential. With this theorem at hand, Fourier coverages for different experimental setups are investigated taking into account parameters such as object orientation, direction of incidence and frequency of illumination. Allowing for simultaneous and discontinuous variation of these parameters, a general filtered backpropagation formula is derived resulting in an explicit approximation of the scattering potential for a large class of experimental setups.

math.NA

Time-Harmonic Optical Flow with Applications in Elastography

In this paper, we propose mathematical models for reconstructing the optical flow in time-harmonic elastography. In this image acquisition technique, the object undergoes a special time-harmonic oscillation with known frequency so that only the spatially varying amplitude of the velocity field has to be determined. This allows for a simpler multi-frame optical flow analysis using Fourier analytic tools in time. We propose three variational optical flow models and show how their minimization can be tackled via Fourier transform in time. Numerical examples with synthetic as well as real-world data demonstrate the benefits of our approach. Keywords: optical flow, elastography, Fourier transform, iteratively reweighted least squares, Horn--Schunck method

math.NA

Parallelly Sliced Optimal Transport on Spheres and on the Rotation Group

Sliced optimal transport, which is basically a Radon transform followed by one-dimensional optimal transport, became popular in various applications due to its efficient computation. In this paper, we deal with sliced optimal transport on the sphere $\mathbb{S}^{d-1}$ and on the rotation group SO(3). We propose a parallel slicing procedure of the sphere which requires again only optimal transforms on the line. We analyze the properties of the corresponding parallelly sliced optimal transport, which provides in particular a rotationally invariant metric on the spherical probability measures. For SO(3), we introduce a new two-dimensional Radon transform and develop its singular value decomposition. Based on this, we propose a sliced optimal transport on SO(3). As Wasserstein distances were extensively used in barycenter computations, we derive algorithms to compute the barycenters with respect to our new sliced Wasserstein distances and provide synthetic numerical examples on the 2-sphere that demonstrate their behavior for both the free and fixed support setting of discrete spherical measures. In terms of computational speed, they outperform the existing methods for semicircular slicing as well as the regularized Wasserstein barycenters.

math.NA

Sliced Optimal Transport on the Sphere

Sliced optimal transport reduces optimal transport on multi-dimensional domains to transport on the line. More precisely, sliced optimal transport is the concatenation of the well-known Radon transform and the cumulative density transform, which analytically yields the solutions of the reduced transport problems. Inspired by this concept, we propose two adaptions for optimal transport on the 2-sphere. Firstly, as counterpart to the Radon transform, we introduce the vertical slice transform, which integrates along all circles orthogonal to a given direction. Secondly, we introduce a semicircle transform, which integrates along all half great circles with an appropriate weight function. Both transforms are generalized to arbitrary measures on the sphere. While the vertical slice transform can be combined with optimal transport on the interval and leads to a sliced Wasserstein distance restricted to even probability measures, the semicircle transform is related to optimal transport on the circle and results in a different sliced Wasserstein distance for arbitrary probability measures. The applicability of both novel sliced optimal transport concepts on the sphere is demonstrated by proof-of-concept examples dealing with the interpolation and classification of spherical probability measures. The numerical implementation relies on the singular value decompositions of both transforms and fast Fourier techniques. For the inversion with respect to probability measures, we propose the minimization of an entropy-regularized Kullback--Leibler divergence, which can be numerically realized using a primal-dual proximal splitting algorithm.

math.NA

A Frame Decomposition of the Funk-Radon Transform

The Funk-Radon transform assigns to a function defined on the unit sphere its integrals along all great circles of the sphere. In this paper, we consider a frame decomposition of the Funk-Radon transform, which is a flexible alternative to the singular value decomposition. In particular, we construct a novel frame decomposition based on trigonometric polynomials and show its application for the inversion of the Funk-Radon transform. Our theoretical findings are verified by numerical experiments, which also incorporate a regularization scheme.

math.NA

A double Fourier sphere method for $d$-dimensional manifolds

The double Fourier sphere (DFS) method uses a clever trick to transform a function defined on the unit sphere to the torus and subsequently approximate it by a Fourier series, which can be evaluated efficiently via fast Fourier transforms. Similar approaches have emerged for approximation problems on the disk, the ball, and the cylinder. In this paper, we introduce a generalized DFS method applicable to various manifolds, including all the above-mentioned cases and many more, such as the rotation group. This approach consists in transforming a function defined on a manifold to the torus of the same dimension. We show that the Fourier series of the transformed function can be transferred back to the manifold, where it converges uniformly to the original function. In particular, we obtain analytic convergence rates in case of H\"older-continuous functions on the manifold.

math.NA

Total Variation-Based Reconstruction and Phase Retrieval for Diffraction Tomography with an Arbitrarily Moving Object

We consider the imaging problem of the reconstruction of a three-dimensional object via optical diffraction tomography under the assumptions of the Born approximation. Our focus lies in the situation that a rigid object performs an irregular, time-dependent rotation under acoustical or optical forces. In this study, we compare reconstruction algorithms in case i) that two-dimensional images of the complex-valued wave are known, or ii) that only the intensity (absolute value) of these images can be measured, which is the case in many practical setups. The latter phase-retrieval problem can be solved by an all-at-once approach based utilizing a hybrid input-output scheme with TV regularization.

math.NA

Motion Detection in Diffraction Tomography by Common Circle Methods

The method of common lines is a well-established reconstruction technique in cryogenic electron microscopy (cryo-EM), which can be used to extract the relative orientations of an object given tomographic projection images from different directions. In this paper, we deal with an analogous problem in optical diffraction tomography. Based on the Fourier diffraction theorem, we show that rigid motions of the object, i.e., rotations and translations, can be determined by detecting common circles in the Fourier-transformed data. We introduce two methods to identify common circles. The first one is motivated by the common line approach for projection images and detects the relative orientation by parameterizing the common circles in the two images. The second one assumes a smooth motion over time and calculates the angular velocity of the rotational motion via an infinitesimal version of the common circle method. Interestingly, using the stereographic projection, both methods can be reformulated as common line methods, but these lines are, in contrast to those used in cryo-EM, not confined to pass through the origin and allow for a full reconstruction of the relative orientations. Numerical proof-of-the-concept examples demonstrate the performance of our reconstruction methods.

math.NA

Accelerating the Sinkhorn algorithm for sparse multi-marginal optimal transport by fast Fourier transforms

We consider the numerical solution of the discrete multi-marginal optimal transport (MOT) by means of the Sinkhorn algorithm. In general, the Sinkhorn algorithm suffers from the curse of dimensionality with respect to the number of marginals. If the MOT cost function decouples according to a tree or circle, its complexity is linear in the number of marginal measures. In this case, we speed up the convolution with the radial kernel required in the Sinkhorn algorithm by non-uniform fast Fourier methods. Each step of the proposed accelerated Sinkhorn algorithm with a tree-structured cost function has a complexity of $\mathcal O(K N)$ instead of the classical $\mathcal O(K N^2)$ for straightforward matrix-vector operations, where $K$ is the number of marginals and each marginal measure is supported on at most $N$ points. In case of a circle-structured cost function, the complexity improves from $\mathcal O(K N^3)$ to $\mathcal O(K N^2)$. This is confirmed by numerical experiments.

math.OC

Total variation-based reconstruction and phase retrieval for diffraction tomography

In optical diffraction tomography (ODT), the three-dimensional scattering potential of a microscopic object rotating around its center is recovered by a series of illuminations with coherent light. Reconstruction algorithms such as the filtered backpropagation require knowledge of the complex-valued wave at the measurement plane, whereas often only intensities, i.e., phaseless measurements, are available in practice. We propose a new reconstruction approach for ODT with unknown phase information based on three key ingredients. First, the light propagation is modeled using Born's approximation enabling us to use the Fourier diffraction theorem. Second, we stabilize the inversion of the non-uniform discrete Fourier transform via total variation regularization utilizing a primal-dual iteration, which also yields a novel numerical inversion formula for ODT with known phase. The third ingredient is a hybrid input-output scheme. We achieved convincing numerical results, which indicate that ODT with phaseless data is possible. The so-obtained 2D and 3D reconstructions are even comparable to the ones with known phase.

math.NA

Diffraction Tomography, Fourier Reconstruction, and Full Waveform Inversion

In this paper, we study the mathematical imaging problem of diffraction tomography (DT), which is an inverse scattering technique used to find material properties of an object by illuminating it with probing waves and recording the scattered waves. Conventional DT relies on the Fourier diffraction theorem, which is applicable under the condition of weak scattering. However, if the object has high contrasts or is too large compared to the wavelength, it tends to produce multiple scattering, which complicates the reconstruction. We give a survey on diffraction tomography and compare the reconstruction of low and high contrast objects. We also implement and compare the reconstruction using the full waveform inversion method which, contrary to the Born and Rytov approximations, works with the total field and is more robust to multiple scattering.

math.NA

Approximation properties of the double Fourier sphere method

We investigate analytic properties of the double Fourier sphere (DFS) method, which transforms a function defined on the two-dimensional sphere to a function defined on the two-dimensional torus. Then the resulting function can be written as a Fourier series yielding an approximation of the original function. We show that the DFS method preserves smoothness: it continuously maps spherical Hölder spaces into the respective spaces on the torus, but it does not preserve spherical Sobolev spaces in the same manner. Furthermore, we prove sufficient conditions for the absolute convergence of the resulting series expansion on the sphere as well as results on the speed of convergence.

math.NA