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Michael R. Fellows

Publications and source records attributed to Michael R. Fellows.

15 recordsLinked to original sources

$O(n +f(k))$: Truly Linear FPT

Parameterized complexity has always been concerned with practical computing: by confining combinatorial explosion to a secondary parameter $k$, one can uncover why and how many NP-hard problems are effectively tackled in practice. Today, however, the scale of data has changed: scientists study Big Data, which is so large that even quadratic dependence in the total input size $n$ is unaffordable. Therefore, what constitutes a practical algorithm has also changed. Classically, parameterized complexity is blind to the difference between defining fixed parameter tractability multiplicatively (i.e. $f(k) \cdot n^c$) or additively (i.e. $f(k) + n^c$). But what if the constant $c$ is one and we require true linearity, is this distinction still inconsequential? Here, we define and explore Truly Linear FPT (TLFPT) -- that is $O(n)+f(k)$ -- and show that it is a strict subset of Linear FPT (LFPT) -- that is $O(n) \cdot f(k)$ -- via diagonalization. Populating TLFPT requires careful consideration of linear-time algorithmics and data structures. We meet many inhabitants of TLFPT: SAT, Vertex Cover, Min-Max Matching, $(n-k)$-Coloring, Diverse Pair of Matchings, $k$-Path, and $H$-Coloring. Our parameterizations are equally varied. Beyond classical parameters like solution size, we leverage two parameters, treedepth and BFS-width, which are particularly well-suited to the TLFPT regime. We do so by developing techniques based on depth- and breadth-first search. For parameterized complexity to be of service to the scientific community, we need to contend with Big Data. For sufficiently large inputs, FPT beyond linear may not suffice. Thus, there is a practical and theoretical need for more ambitious goals. TLFPT is a first step forward.

cs.CC

On Solution Discovery via Reconfiguration

The dynamics of real-world applications and systems require efficient methods for improving infeasible solutions or restoring corrupted ones by making modifications to the current state of a system in a restricted way. We propose a new framework of solution discovery via reconfiguration for constructing a feasible solution for a given problem by executing a sequence of small modifications starting from a given state. Our framework integrates and formalizes different aspects of classical local search, reoptimization, and combinatorial reconfiguration. We exemplify our framework on a multitude of fundamental combinatorial problems, namely Vertex Cover, Independent Set, Dominating Set, and Coloring. We study the classical as well as the parameterized complexity of the solution discovery variants of those problems and explore the boundary between tractable and intractable instances.

cs.CC

Parameterized String Equations

We study systems of String Equations where block variables need to be assigned strings so that their concatenation gives a specified target string. We investigate this problem under a multivariate complexity framework, searching for tractable special cases such as systems of equations with few block variables or few equations. Our main results include a polynomial-time algorithm for size-2 equations, and hardness for size-3 equations, as well as hardness for systems of two equations, even with tight constraints on the block variables. We also study a variant where few deletions are allowed in the target string, and give XP algorithms in this setting when the number of block variables is constant.

cs.CC

Diversity of Solutions: An Exploration Through the Lens of Fixed-Parameter Tractability Theory

When modeling an application of practical relevance as an instance of a combinatorial problem X, we are often interested not merely in finding one optimal solution for that instance, but in finding a sufficiently diverse collection of good solutions. In this work we initiate a systematic study of diversity from the point of view of fixed-parameter tractability theory. First, we consider an intuitive notion of diversity of a collection of solutions which suits a large variety of combinatorial problems of practical interest. We then present an algorithmic framework which --automatically-- converts a tree-decomposition-based dynamic programming algorithm for a given combinatorial problem X into a dynamic programming algorithm for the diverse version of X. Surprisingly, our algorithm has a polynomial dependence on the diversity parameter.

cs.DS

What is known about Vertex Cover Kernelization?

We are pleased to dedicate this survey on kernelization of the Vertex Cover problem, to Professor Juraj Hromkovič on the occasion of his 60th birthday. The Vertex Cover problem is often referred to as the Drosophila of parameterized complexity. It enjoys a long history. New and worthy perspectives will always be demonstrated first with concrete results here. This survey discusses several research directions in Vertex Cover kernelization. The Barrier Degree of Vertex Cover kernelization is discussed. We have reduction rules that kernelize vertices of small degree, including in this paper new results that reduce graphs almost to minimum degree five. Can this process go on forever? What is the minimum vertex-degree barrier for polynomial-time kernelization? Assuming the Exponential-Time Hypothesis, there is a minimum degree barrier. The idea of automated kernelization is discussed. We here report the first experimental results of an AI-guided branching algorithm for Vertex Cover whose logic seems amenable for application in finding reduction rules to kernelize small-degree vertices. The survey highlights a central open problem in parameterized complexity. Happy Birthday, Juraj!

cs.DS

Myhill-Nerode methods for hypergraphs

We give an analog of the Myhill-Nerode methods from formal language theory for hypergraphs and use it to derive the following results for two NP-hard hypergraph problems: * We provide an algorithm for testing whether a hypergraph has cutwidth at most k that runs in linear time for constant k. In terms of parameterized complexity theory, the problem is fixed-parameter linear parameterized by k. * We show that it is not expressible in monadic second-order logic whether a hypergraph has bounded (fractional, generalized) hypertree width. The proof leads us to conjecture that, in terms of parameterized complexity theory, these problems are W[1]-hard parameterized by the incidence treewidth (the treewidth of the incidence graph). Thus, in the form of the Myhill-Nerode theorem for hypergraphs, we obtain a method to derive linear-time algorithms and to obtain indicators for intractability for hypergraph problems parameterized by incidence treewidth. In an appendix, we point out an error and a fix to the proof of the Myhill-Nerode theorem for graphs in Downey and Fellow's book on parameterized complexity.

cs.DM

FPT is Characterized by Useful Obstruction Sets

Many graph problems were first shown to be fixed-parameter tractable using the results of Robertson and Seymour on graph minors. We show that the combination of finite, computable, obstruction sets and efficient order tests is not just one way of obtaining strongly uniform FPT algorithms, but that all of FPT may be captured in this way. Our new characterization of FPT has a strong connection to the theory of kernelization, as we prove that problems with polynomial kernels can be characterized by obstruction sets whose elements have polynomial size. Consequently we investigate the interplay between the sizes of problem kernels and the sizes of the elements of such obstruction sets, obtaining several examples of how results in one area yield new insights in the other. We show how exponential-size minor-minimal obstructions for pathwidth k form the crucial ingredient in a novel OR-cross-composition for k-Pathwidth, complementing the trivial AND-composition that is known for this problem. In the other direction, we show that OR-cross-compositions into a parameterized problem can be used to rule out the existence of efficiently generated quasi-orders on its instances that characterize the NO-instances by polynomial-size obstructions.

cs.CC

Parameterizing by the Number of Numbers

The usefulness of parameterized algorithmics has often depended on what Niedermeier has called, "the art of problem parameterization". In this paper we introduce and explore a novel but general form of parameterization: the number of numbers. Several classic numerical problems, such as Subset Sum, Partition, 3-Partition, Numerical 3-Dimensional Matching, and Numerical Matching with Target Sums, have multisets of integers as input. We initiate the study of parameterizing these problems by the number of distinct integers in the input. We rely on an FPT result for ILPF to show that all the above-mentioned problems are fixed-parameter tractable when parameterized in this way. In various applied settings, problem inputs often consist in part of multisets of integers or multisets of weighted objects (such as edges in a graph, or jobs to be scheduled). Such number-of-numbers parameterized problems often reduce to subproblems about transition systems of various kinds, parameterized by the size of the system description. We consider several core problems of this kind relevant to number-of-numbers parameterization. Our main hardness result considers the problem: given a non-deterministic Mealy machine M (a finite state automaton outputting a letter on each transition), an input word x, and a census requirement c for the output word specifying how many times each letter of the output alphabet should be written, decide whether there exists a computation of M reading x that outputs a word y that meets the requirement c. We show that this problem is hard for W[1]. If the question is whether there exists an input word x such that a computation of M on x outputs a word that meets c, the problem becomes fixed-parameter tractable.

cs.DS

A Generalization of Nemhauser and Trotter's Local Optimization Theorem

The Nemhauser-Trotter local optimization theorem applies to the NP-hard Vertex Cover problem and has applications in approximation as well as parameterized algorithmics. We present a framework that generalizes Nemhauser and Trotter's result to vertex deletion and graph packing problems, introducing novel algorithmic strategies based on purely combinatorial arguments (not referring to linear programming as the Nemhauser-Trotter result originally did). We exhibit our framework using a generalization of Vertex Cover, called Bounded- Degree Deletion, that has promise to become an important tool in the analysis of gene and other biological networks. For some fixed d \geq 0, Bounded-Degree Deletion asks to delete as few vertices as possible from a graph in order to transform it into a graph with maximum vertex degree at most d. Vertex Cover is the special case of d = 0. Our generalization of the Nemhauser-Trotter theorem implies that Bounded-Degree Deletion has a problem kernel with a linear number of vertices for every constant d. We also outline an application of our extremal combinatorial approach to the problem of packing stars with a bounded number of leaves. Finally, charting the border between (parameterized) tractability and intractability for Bounded-Degree Deletion, we provide a W[2]-hardness result for Bounded-Degree Deletion in case of unbounded d-values.

cs.CC

Polynomial Time Data Reduction for Dominating Set

Dealing with the NP-complete Dominating Set problem on undirected graphs, we demonstrate the power of data reduction by preprocessing from a theoretical as well as a practical side. In particular, we prove that Dominating Set restricted to planar graphs has a so-called problem kernel of linear size, achieved by two simple and easy to implement reduction rules. Moreover, having implemented our reduction rules, first experiments indicate the impressive practical potential of these rules. Thus, this work seems to open up a new and prospective way how to cope with one of the most important problems in graph theory and combinatorial optimization.

cs.DS

Parameterized Intractability of Motif Search Problems

We show that Closest Substring, one of the most important problems in the field of biological sequence analysis, is W[1]-hard when parameterized by the number k of input strings (and remains so, even over a binary alphabet). This problem is therefore unlikely to be solvable in time O(f(k)\cdot n^{c}) for any function f of k and constant c independent of k. The problem can therefore be expected to be intractable, in any practical sense, for k>=3. Our result supports the intuition that Closest Substring is computationally much harder than the special case of Closest String, although both problems are NP-complete. We also prove W[1]-hardness for other parameterizations in the case of unbounded alphabet size. Our W[1]-hardness result for Closest Substring generalizes to Consensus Patterns, a problem of similar significance in computational biology.

cs.CC

Algebraic constructions of efficient broadcast networks

Cayley graph techniques are introduced for the problem of constructing networks having the maximum possible number of nodes, among networks that satisfy prescribed bounds on the parameters maximum node degree and broadcast diameter. The broadcast diameter of a network is the maximum time required for a message originating at a node of the network to be relayed to all other nodes, under the restriction that in a single time step any node can communicate with only one neighboring node. For many parameter values these algebraic methods yield the largest known constructions, improving on previous graph-theoretic approaches. It has previously been shown that hypercubes are optimal for degree $k$ and broadcast diameter $k$. A construction employing dihedral groups is shown to be optimal for degree $k$ and broadcast diameter $k+1$.

math.CO

Obstructions to within a few vertices or edges of acyclic

Finite obstruction sets for lower ideals in the minor order are guaranteed to exist by the Graph Minor Theorem. It has been known for several years that, in principle, obstruction sets can be mechanically computed for most natural lower ideals. In this paper, we describe a general-purpose method for finding obstructions by using a bounded treewidth (or pathwidth) search. We illustrate this approach by characterizing certain families of cycle-cover graphs based on the two well-known problems: $k$-{\sc Feedback Vertex Set} and $k$-{\sc Feedback Edge Set}. Our search is based on a number of algorithmic strategies by which large constants can be mitigated, including a randomized strategy for obtaining proofs of minimality.

math.CO

Algorithms for learning and teaching sets of vertices in graphs

The learning complexity of special sets of vertices in graphs is studied in the model(s) of exact learning by (extended) equivalence and membership queries. Polynomial-time learning algorithms are described for vertex covers, independent sets, and dominating sets. The complexity of learning vertex sets of fixed size is also investigated, and it is shown that the k-element vertex covers in a graph can be learned in a number of rounds of interaction that is independent of the size of the graph. Apart from the elegance of these algorithmic problems, the chief motivation is the surprising recently established connection between the important unsolved problem of the learning complexity of CNF (or DNF) formulas and the learning complexity of dominating sets. The complexity of teaching sets of vertices in graphs is also considered.

math.CO

A simple linear-time algorithm for finding path-decompositions of small width

We described a simple algorithm running in linear time for each fixed constant $k$, that either establishes that the pathwidth of a graph $G$ is greater than $k$, or finds a path-decomposition of $G$ of width at most $O(2^{k})$. This provides a simple proof of the result by Bodlaender that many families of graphs of bounded pathwidth can be recognized in linear time.

math.CO