Michal Bogdan | Searcharxiv

arXiv2023

Crystallization and topology-induced dynamical heterogeneities in soft granular clusters

Soft-granular media, such as dense emulsions, foams or tissues, exhibit either fluid- or solid-like properties depending on the applied external stresses. Whereas bulk rheology of such materials has been thoroughly investigated, the internal structural mechanics of finite soft-granular structures with free interfaces is still poorly understood. Here, we report the spontaneous `crystallization' and `melting' inside a model soft granular cluster -- a densely packed aggregate of $N\sim 30-40$ droplets engulfed by a fluid film -- subject to a varying external flow. We develop new machine learning tools to track the internal rearrangements in the quasi-2D cluster as it transits a sequence of constrictions. As the cluster relaxes from a state of strong mechanical deformations, we find differences in the dynamics of the grains within the interior of the cluster and those at its rim, with the latter experiencing larger deformations and less frequent rearrangements, effectively acting as an elastic membrane around a fluid-like core. We conclude that the observed structural-dynamical heterogeneity results from an interplay of the topological constrains, due to the presence of a closed interface, and the internal solid-fluid transitions. We discuss universality of such behavior in various types of finite soft granular structures, including biological tissues.

cond-mat.soft↗

arXiv2022

DropTrack -- automatic droplet tracking using deep learning for microfluidic applications

Deep neural networks are rapidly emerging as data analysis tools, often outperforming the conventional techniques used in complex microfluidic systems. One fundamental analysis frequently desired in microfluidic experiments is counting and tracking the droplets. Specifically, droplet tracking in dense emulsions is challenging as droplets move in tightly packed configurations. Sometimes the individual droplets in these dense clusters are hard to resolve, even for a human observer. Here, two deep learning-based cutting-edge algorithms for object detection (YOLO) and object tracking (DeepSORT) are combined into a single image analysis tool, DropTrack, to track droplets in microfluidic experiments. DropTrack analyzes input videos, extracts droplets' trajectories, and infers other observables of interest, such as droplet numbers. Training an object detector network for droplet recognition with manually annotated images is a labor-intensive task and a persistent bottleneck. This work partly resolves this problem by training object detector networks (YOLOv5) with hybrid datasets containing real and synthetic images. We present an analysis of a double emulsion experiment as a case study to measure DropTrack's performance. For our test case, the YOLO networks trained with 60% synthetic images show similar performance in droplet counting as with the one trained using 100% real images, meanwhile saving the image annotation work by 60%. DropTrack's performance is measured in terms of mean average precision (mAP), mean square error in counting the droplets, and inference speed. The fastest configuration of DropTrack runs inference at about 30 frames per second, well within the standards for real-time image analysis.

cs.CV↗