arXiv subjects

Michal Pavelka

Publications and source records attributed to Michal Pavelka.

At least 37 records · Page 2Linked to original sources

arXiv2022

On the role of geometry in statistical mechanics and thermodynamics I: Geometric perspective

This paper contains a fully geometric formulation of the General Equation for Non-Equilibrium Reversible-Irreversible Coupling (GENERIC). Although GENERIC, which is the sum of Hamiltonian mechanics and gradient dynamics, is a framework unifying a vast range of models in non-equilibrium thermodynamics, it has unclear geometric structure, due to the diverse geometric origins of Hamiltonian mechanics and gradient dynamics. The difference can be overcome by cotangent lifts of the dynamics, which leads, for instance, to a Hamiltonian form of gradient dynamics. Moreover, the lifted vector fields can be split into their holonomic and vertical representatives, which provides a geometric method of dynamic reduction. The lifted dynamics can be also given physical meaning, here called the rate-GENERIC. Finally, the lifts can be formulated within contact geometry, where the second law of thermodynamics is explicitly contained within the evolution equations.

cond-mat.stat-mech↗

arXiv2022

On the role of geometry in statistical mechanics and thermodynamics II: Thermodynamic perspective

The General Equation for Non-Equilibrium Reversible-Irreversible Coupling (GENERIC) provides structure of mesoscopic multiscale dynamics that guarantees emergence of equilibrium states. Similarly, a lift of the GENERIC structure to iterated cotangent bundles, called a rate GENERIC, guarantees emergence of the vector fields that generate the approach to equilibrium. Moreover, the rate GENERIC structure also extends Onsager's variational principle. The MaxEnt (Maximum Entropy) principle in the GENERIC structure becomes the Onsager variational principle in the rate GENERIC structure. In the absence of external forces, the rate entropy is a potential that is closely related to the entropy production. In the presence of external forces when the entropy does not exist, the rate entropy still exists. While the entropy at the conclusion of the GENERIC time evolution gives rise to equilibrium thermodynamics, the rate entropy at the conclusion of the rate GENERIC time evolution gives rise to rate thermodynamics. Both GENERIC and rate GENERIC structures are put into the geometrical framework in the first paper of this series. The rate GENERIC is also shown to be related to Grad's hierarchy analysis of reductions of the Boltzmann equation. Chemical kinetics and kinetic theory provide illustrative examples. We introduce rate GENERIC extensions (and thus also Onsager-variational-principle formulations) of both chemical kinetics and the Boltzmann kinetic theory.

cond-mat.stat-mech↗

arXiv2022

Globally time-reversible fluid simulations with smoothed particle hydrodynamics

This paper describes an energy-preserving and globally time-reversible code for weakly compressible smoothed particle hydrodynamics (SPH). We do not add any additional dynamics to the Monaghan's original SPH scheme at the level of ordinary differential equation, but we show how to discretize the equations by using a corrected expression for density and by invoking a symplectic integrator. Moreover, to achieve the global-in-time reversibility, we have to correct the initial state, implement a conservative fluid-wall interaction, and use the fixed-point arithmetic. Although the numerical scheme is reversible globally in time (solvable backwards in time while recovering the initial conditions), we observe thermalization of the particle velocities and growth of the Boltzmann entropy. In other words, when we do not see all the possible details, as in the Boltzmann entropy, which depends only on the one-particle distribution function, we observe the emergence of the second law of thermodynamics (irreversible behavior) from purely reversible dynamics.

math.NA↗

arXiv2022

Comparison of the Symmetric Hyperbolic Thermodynamically Compatible framework with Hamiltonian mechanics of binary mixtures

How to properly describe continuum thermodynamics of binary mixtures where each constituent has its own momentum? The Symmetric Hyperbolic Thermodynamically Consistent (SHTC) framework and Hamiltonian mechanics in the form of the General Equation for Non-Equilibrium Reversible-Irreversible Coupling (GENERIC) provide two answers, which are similar but not identical, and are compared in this article. They are compared both analytically and numerically on several levels of description, varying in the amount of detail. The GENERIC equations, stemming from the Liouville equation, contain terms expressing self-advection of the relative velocity by itself, which lead to a vorticity-dependent diffusion matrix after a reduction. The SHTC equations, on the other hand, do not contain such terms. We also show how to formulate a theory of mixtures with two momenta and only one temperature that is compatible with the Liouville equation and possesses the Hamiltonian structure, including Jacobi identity.

physics.flu-dyn↗

arXiv2021

Learning the GENERIC evolution

We propose a novel approach for learning the evolution that employs differentiable neural networks to approximate the full GENERIC structure. Instead of manually choosing the fitted parameters, we learn the whole model together with the evolution equations. We can reconstruct the energy and entropy functions for the system under various assumptions and accurately capture systems behaviour for a double thermoelastic pendulum and a rigid body.

physics.comp-ph↗

arXiv2021

Fluctuating Multiscale Mass Action Law

The classical mass action law in chemical kinetics is put into the context of multiscale thermodynamics.Despite the purely dissipative character of the classical mass action law, inertial effects also play a role in chemical kinetics. Therefore, the kinetics is extended to an enlarged state space with reaction rates as new state variables and bringing inertial effects. The dynamics is then lifted to the Liouville description within kinetic theory on the enlarged state space in order to include fluctuations. Subsequently, the kinetic theory is reduced to its first and second moments, leading to a new Grad-like hierarchy in chemical kinetics, expressing the multiscale nature of the chemical kinetic with inertia. Dissipation within the extended state space is proposed and it is shown to lead to the classical mass action law when the moments relax to their respective quasi-equilibria. In particular, we demonstrate the possibility of oscillating homogeneous chemical reactions and how the correlations of fluctuations correspond with the chemical kinetics.

physics.chem-ph↗

arXiv2021

A case study of non-Fourier heat conduction using Internal Variables and GENERIC

Applying simultaneously the methodology of Non-Equilibrium Thermodynamics with Internal Variables (NET-IV) and the framework of General Equation for the Non-Equilibrium Reversible-Irreversible Coupling (GENERIC), we demonstrate that, in heat conduction theories, entropy current multipliers can be interpreted as relaxed state variables. Fourier's law and its various extensions -- the Maxwell-Cattaneo-Vernotte, Guyer-Krumhansl, Jeffreys type, Ginzburg-Landau (Allen-Cahn) type and ballistic-diffusive -- heat conduction equations are derived in both formulations. Along these lines, a comparison of NET-IV and GENERIC is also performed. Our results may pave the way for microscopic/multiscale understanding of beyond-Fourier heat conduction, and open new ways for numerical simulations of heat-conduction problems.

physics.class-ph↗

arXiv2021

On compatibility of the Natural configuration framework with GENERIC: Derivation of anisotropic rate-type models

Within the framework of natural configurations developed by Rajagopal and Srinivasa, evolution within continuum thermodynamics is formulated as evolution of a natural configuration linked with the current configuration. On the other hand, withing the General Equation for Non-Equilibrium Reversible-Irreversible Coupling (GENERIC) framework, the evolution is split into Hamiltonian mechanics and (generalized) gradient dynamics. These seemingly radically different approaches have actually a lot in common and we show their compatibility on a wide range of models. Both frameworks are illustrated on~isotropic and anisotropic rate-type fluid models. We propose an interpretation of the natural configurations within GENERIC and vice versa (when possible).

cond-mat.stat-mech↗

arXiv2021

Learning Physics from Data: a Thermodynamic Interpretation

Experimental data bases are typically very large and high dimensional. To learn from them requires to recognize important features (a pattern), often present at scales different to that of the recorded data. Following the experience collected in statistical mechanics and thermodynamics, the process of recognizing the pattern (the learning process) can be seen as a dissipative time evolution driven by entropy from a detailed level of description to less detailed. This is the way thermodynamics enters machine learning. On the other hand, reversible (typically Hamiltonian) evolution is propagation within the levels of description, that is also to be recognized. This is how Poisson geometry enters machine learning. Learning to handle free surface liquids and damped rigid body rotation serves as an illustration.

physics.data-an↗

arXiv2020

Multiscale thermodynamics of charged mixtures

A multiscale theory of interacting continuum mechanics and thermodynamics of mixtures of fluids, electrodynamics, polarization and magnetization is proposed. The mechanical (reversible) part of the theory is constructed in a purely geometric way by means of semidirect products. This leads to a complex Hamiltonian system with a new Poisson bracket, which can be used in principle with any energy functional. The thermodynamic (irreversible) part is added as gradient dynamics, generated by derivatives of a dissipation potential, which makes the theory part of the GENERIC framework. Subsequently, Dynamic MaxEnt reductions are carried out, which lead to reduced GENERIC models for smaller sets of state variables. Eventually, standard engineering models are recovered as the low-level limits of the detailed theory. The theory is then compared to recent literature.

physics.class-ph↗

arXiv2020

Generalization of the dynamical lack-of-fit reduction

The lack-of-fit statistical reduction, developed and formulated first by Bruce Turkington, is a general method taking Liouville equation for probability density (detailed level) and transforming it to reduced dynamics of projected quantities (less detailed level). In this paper the method is generalized. The Hamiltonian Liouville equation is replaced by an arbitrary Hamiltonian evolution combined with gradient dynamics (GENERIC), the Boltzmann entropy is replaced by an arbitrary entropy, and the kinetic energy by an arbitrary energy. The gradient part is a generalized gradient dynamics generated by a dissipation potential. The reduced evolution of the projected state variables is shown to preserve the GENERIC structure of the original (detailed level) evolution. The dissipation potential is obtained by solving a Hamilton-Jacobi equation. In summary, the lack-of-fit reduction can start with GENERIC and obtain GENERIC for the reduced state variables.

cond-mat.stat-mech↗

arXiv2020

On Hamiltonian continuum mechanics

Continuum mechanics can be formulated in the Lagrangian frame (addressing motion of individual continuum particles) or in the Eulerian frame (addressing evolution of fields in an inertial frame). There is a canonical Hamiltonian structure in the Lagrangian frame. By transformation to the Eulerian frame we find the Poisson bracket for Eulerian continuum mechanics with deformation gradient (or the related distortion matrix). Both Lagrangian and Eulerian Hamiltonian structures are then discussed from the perspective of space-time variational formulation and by means of semidirect products and Lie algebras. Finally, we discuss the importance of the Jacobi identity in continuum mechanics and approaches to prove hyperbolicity of the evolution equations and their gauge invariance.

physics.class-ph↗

arXiv2019

On the thermodynamic derivation of Nernst relation

What is the maximum voltage of a cell with a given electrochemical reaction? The answer to this question has been given more than a century ago by Walther Nernst and bears his name. Unfortunately, the assumptions behind the answer have been forgotten by many authors, which leads to wrong forms of the Nernst relation. Such mistakes can be overcome by applying a correct thermodynamic derivation independently of the form in which the reaction is written. The correct form of Nernst relation is important for instance in modelling of vanadium redox flow batteries or zinc-air batteries. In particular, the presence of corrosion can impact the OCV in the case of zinc-air batteries.

physics.chem-ph↗

arXiv2019

Gradient and GENERIC evolution towards reduced dynamics

Let (M,J) be a dynamical model of macroscopic systems and (N,K) a less microscopic model (i.e. a model involving less details) of the same macroscopic systems; M and N are manifolds, J are vector fields on M, and K are vector fields on N. Let P be the phase portrait corresponding to (M,J) (i.e. P is the set of all trajectories in M generated by a family of vector fields in J), and R the phase portrait corresponding to (N,K). Thermodynamics in its general sense is a pattern recognition process in which R is recognized as a pattern in P. In particular, the classical (both equilibrium and nonequilibrium) thermodynamics arises in the investigation of relations between models (M,J) and models without time evolution, i.e. models with K= 0. In such case R is a submanifold of M composed of fixed points. Let Su mapping M to R be a potential, called an upper entropy, generating the vector field J. The equilibrium thermodynamic relation in N is the lower entropy Sd(y) defined by Sd(y)=Su(x=y), where x is in M,y in N, and y is given by a final destination (i.e. when the time goes to infinity) of x in the time evolution generated by the vector field J. In this paper we show that if K is not zero (e.g. in externally forced or, in other words, open systems), then the reduction also provides thermodynamics (we call it flux-thermodynamics). If certain conditions are satisfied, then the lower entropy Ss, that arises in the investigation of the approach of J to K, is the time derivative of the lower entropy Sd arising in the investigation of the approach of M to N as t goes to infinity.

math-ph↗

arXiv2019

Ehrenfest regularization of Hamiltonian systems

Imagine a freely rotating rigid body. The body has three principal axes of rotation. It follows from mathematical analysis of the evolution equations that pure rotations around the major and minor axes are stable while rotation around the middle axis is unstable. However, only rotation around the major axis (with highest moment of inertia) is stable in physical reality (as demonstrated by the unexpected change of rotation of the Explorer 1 probe). We propose a general method of Ehrenfest regularization of Hamiltonian equations by which the reversible Hamiltonian equations are equipped with irreversible terms constructed from the Hamiltonian dynamics itself. The method is demonstrated on harmonic oscillator, rigid body motion (solving the problem of stable minor axis rotation), ideal fluid mechanics and kinetic theory. In particular, the regularization can be seen as a birth of irreversibility and dissipation. In addition, we discuss and propose discretizations of the Ehrenfest regularized evolution equations such that key model characteristics (behavior of energy and entropy) are valid in the numerical scheme as well.

physics.comp-ph↗

arXiv2018

Entropy and Entropy Production in Multiscale Dynamics

Heat conduction is investigated on three levels: equilibrium, Fourier, and Cattaneo. The Fourier level is either the point of departure for investigating the approach to equilibrium or the final stage in the investigation of the approach from the Cattaneo level. Both investigations bring to the Fourier level an entropy and a thermodynamics. In the absence of external and internal influences preventing the approach to equilibrium the entropy that arises in the latter investigation is the production of the classical entropy that arises in the former investigation. If the approach to equilibrium is prevented, then the entropy that arises in the investigation of the approach from the Cattaneo level to the Fourier level still brings to the Fourier level the entropy and the thermodynamics even if the classical entropy and the classical thermodynamics is absent. We also note that vanishing total entropy production as a characterization of equilibrium state is insufficient.

cond-mat.stat-mech↗

arXiv2018

Non-convex dissipation potentials in multiscale non-equilibrium thermodynamics

Reformulating constitutive relation in terms of gradient dynamics (being derivative of a dissipation potential) brings additional information on stability, metastability and instability of the dynamics with respect to perturbations of the constitutive relation, called CR-stability. CR-instability is connected to the loss of convexity of the dissipation potential, which makes the Legendre-conjugate dissipation potential multivalued and causes dissipative phase transitions, that are not induced by non-convexity of free energy, but by non-convexity of the dissipation potential. CR-stability of the constitutive relation with respect to perturbations is then manifested by constructing evolution equations for the perturbations in a thermodynamically sound way. As a result, interesting experimental observations of behavior of complex fluids under shear flow and supercritical boiling curve can be explained.

physics.flu-dyn↗

arXiv2017

Statistical mechanics of Landau damping

Landau damping is the tendency of solutions to the Vlasov equation towards spatially homogeneous distribution functions. The distribution functions however approach the spatially homogeneous manifold only weakly, and Boltzmann entropy is not changed by Vlasov equation. On the other hand, density and kinetic energy density, which are integrals of the distribution function, approach spatially homogeneous states strongly, which is accompanied by growth of the hydrodynamic entropy. Such a behavior can be seen when Vlasov equation is reduced to the evolution equations for density and kinetic energy density by means of the Ehrenfest reduction.

physics.flu-dyn↗