arXiv subjects

Michalis Chatzittofi

Publications and source records attributed to Michalis Chatzittofi.

12 recordsLinked to original sources

arXiv2026

Nucleation and time-reversal symmetry breaking in nonconserved scalar field theories

Classical nucleation theory (CNT) describes the formation of a stable phase from a metastable one in terms of a single reaction coordinate that corresponds to the radius of a nucleating droplet. In this work, we provide a full account of nonequilibrium nucleation theory (NNT), which generalizes CNT to non-equilibrium field theories with non-conserved order parameter. We present two equivalent derivations of the dynamics of the droplet radius: a stochastic route, based on a direct projection of the stochastic field equation onto the radial reaction coordinate, and a route based on the minimization of the Freidlin-Wentzell action. Crucially, the quasipotential barrier predicted by NNT differs from the one found when assuming the instanton to be the time-reversal of the relaxation dynamics. Whereas the interfacial density profile differs from that on the relaxation path, an analytical derivation of NNT remains possible using a careful definition of the reaction coordinate. This leverages the perturbative structure that (in common with CNT) emerges in the limit of large critical radius. We further derive with similar techniques the dynamics of capillary waves, whose stability is required for the CNT/NNT precept of a near-spherical droplet to prevail. After deriving our theory for generic non-conserved field-theories, we address two explicit examples: a non-equilibrium generalization of Model A (Active Model A), and a population dynamics model (with two choices of noise that each break time-reversal symmetry). In both cases, we validate our analytical NNT against numerical results obtained by action minimization, with excellent agreement. NNT provide a systematic framework for constructing nucleation theories in a broad class of non-equilibrium systems from active matter, reaction-diffusion systems and population dynamics.

cond-mat.stat-mech↗

arXiv2026

Nonequilibrium nucleation theory for nonconserved fields: from active matter to population dynamics

Classical nucleation theory (CNT) describes the formation of a stable phase from a metastable one. In equilibrium systems, it quantifies the free-energy competition between a favorable bulk gain and an unfavorable interfacial cost. For systems without detailed balance, the corresponding nonequilibrium nucleation theory (NNT) was so far developed only for cases with a conserved order parameter, such as active fluid-fluid phase separation. Here we construct the NNT for systems with a (single, scalar) nonconserved order parameter. Unlike in the conserved case, the nucleation barrier controlling (noise-driven) droplet growth is profoundly altered by deviations in the interfacial density profile from the one arising during (deterministic) droplet relaxation. The barrier can nonetheless be analysed by carefully defining the reaction coordinate (droplet radius) to project out those deviations. We give explicit NNT predictions for models drawn from population dynamics and active matter, finding excellent agreement with numerical studies.

cond-mat.stat-mech↗

arXiv2026

Self-phoretic colloids in chiral active fluids

Autonomous and driven transport in chiral active fluids have been shown to exhibit features that cannot be accommodated within the classical formulation of fluid mechanics, due to the role of odd viscosity. We generalize the theory of phoretic active matter to fluid environments with odd viscosity and derive expressions for translational and rotational self-propulsion velocities in the case of a spherical swimmer with arbitrary activity and mobility surface profiles. We discuss specific examples of chemically active colloids with axisymmetric and non-axisymmetric coatings and the resulting interplay between symmetry and chirality. Our results can be applied to study the emergent collective dynamics of phoretic particles in fluid media with broken time-reversal and parity symmetries.

cond-mat.soft↗

arXiv2025

Dumbbell dimer dynamics in three-dimensional chiral fluids

We study the emergent orientational dynamics of a dumbbell dimer -- two asymmetric monomers connected by a linking spring -- in a three-dimensional chiral environment with odd viscosity. In classical systems with conserved parity symmetry, reciprocal oscillations of a dimer does not lead to rotational motion. Here, through an analytical calculation, we find that the presence of chirality in the system induces rotational dynamics as function of the expansion/contraction of the dimer. By incorporating thermal fluctuations, we further find that the rotational diffusivity is affected by the coupling between conformational fluctuations and rotational motion. Our results provide insights into problems where the parity symmetry is broken and can be used as a building block to study similar models at the collective level. These problems include multi-component molecular machines in odd-viscous fluids and systems with charged polymers where oddity is present through external magnetic fields.

cond-mat.soft↗

arXiv2025

Mechanical inhibition of dissipation in a thermodynamically consistent active solid

The study of active solids offers a window into the mechanics and thermodynamics of dense living matter. A key aspect of the non-equilibrium dynamics of such active systems is a mechanistic description of how the underlying mechano-chemical couplings arise, which cannot be resolved in models that are phenomenologically constructed. Here, we follow a bottom-up theoretical approach to develop a thermodynamically consistent active solid (TCAS) model, and uncover a non-trivial cross-talk that naturally ensues between mechanical response and dissipation. In particular, we show that dissipation reaches a maximum at finite stresses, while it is inhibited under large stresses, effectively reverting the system to a passive state. Our findings establish a generic mechanism plausibly responsible for the non-monotonic behaviour observed in recent experimental measurements of entropy production rate in an actomyosin material and enzymatic activity in crowded condensates.

cond-mat.soft↗

arXiv2025

Mechanistic rules for de novo design of enzymes

Enzymes are nano-scale machines that have evolved to drive chemical reactions out of equilibrium in the right place at the right time. Given the complexity and specificity of enzymatic function, bottom-up design of enzymes presents a daunting task that is far more challenging than making passive molecules with specific binding affinities or building nano-scale mechanically active devices. We present a thermodynamically-consistent model for the operation of such a fuelled enzyme, which uses the energy from a favourable reaction to undergo non-equilibrium conformational changes that in turn catalyze a chemical reaction on an attached substrate molecule. We show that enzymatic function can emerge through a bifurcation upon appropriate implementation of momentum conservation on the effective reaction coordinates of the low dimensional description of the enzyme, and thanks to a generically present dissipative coupling. Our results can complement the recently developed strategies for de novo enzyme design based on machine learning approaches.

cond-mat.soft↗

arXiv2025

Topological phase locking in stochastic oscillators

The dynamics of many nanoscale biological and synthetic systems such as enzymes and molecular motors are activated by thermal noise, and driven out-of-equilibrium by local energy dissipation. Because the energies dissipated in these systems are comparable to the thermal energy, one would generally expect their dynamics to be highly stochastic. Here, by studying a thermodynamically-consistent model of two coupled noise-activated oscillators, we show that this is not always the case. Thanks to a novel phenomenon that we term topological phase locking (TPL), the coupled dynamics become quasi-deterministic, resulting in a greatly enhanced average speed of the oscillators. TPL is characterized by the emergence of a band of periodic orbits that form a torus knot in phase space, along which the two oscillators advance in rational multiples of each other. The effectively conservative dynamics along this band coexists with the basin of attraction of the dissipative fixed point. We further show that TPL arises as a result of a complex, infinite hierarchy of global bifurcations. Our results have implications for understanding the dynamics of a wide range of systems, from biological enzymes and molecular motors to engineered nanoscale electronic, optical, or mechanical oscillators.

cond-mat.stat-mech↗

arXiv2024

Nonlinear response theory of molecular machines

Chemical affinities are responsible for driving active matter systems out of equilibrium. At the nano-scale, molecular machines interact with the surrounding environment and are subjected to external forces. The mechano-chemical coupling which arises naturally in these systems reveals a complex interplay between chemical and mechanical degrees of freedom with strong impact on their active mechanism. By considering various models far from equilibrium, we show that the tuning of applied forces give rise to a nonlinear response that causes a non-monotonic behaviour in the machines' activity. Our findings have implications in understanding, designing, and triggering such processes by controlled application of external fields, including the collective dynamics of larger non-equilibrium systems where the total dissipation and performance might be affected by internal and inter-particle interactions.

cond-mat.soft↗

arXiv2024

Thermodynamic inference of correlations in nonequilibrium collective dynamics

The theory of stochastic thermodynamics has revealed many useful fluctuation relations, with the thermodynamic uncertainty relation (TUR) being a theorem of major interest. When many nonequilibrium currents interact with each other, a naive application of the TUR to an individual current can result in an apparent violation of the TUR bound. Here, we explore how such an apparent violation can be used to put a lower bound on the strength of correlations $C$ as well as the number $N$ of interacting currents in collective dynamics. This lower bound is a combined bound on $C(N-1)$ if only one current is measured, or a bound on $N$ if two currents are measured. Our proposed protocol allows for the inference of hidden correlations in experiment, for example when a team of molecular motors pulls on the same cargo but only one or a subset of them is fluorescently tagged. By solving analytically and numerically several models of many-body nonequilibrium dynamics, we ascertain under which conditions this strategy can be applied and the inferred bound on correlations becomes tight.

cond-mat.stat-mech↗

arXiv2024

Chirotactic response of microswimmers in fluids with odd viscosity

Odd viscosity is a property of chiral active fluids with broken time-reversal and parity symmetries. We show that the flow of such a fluid around a rotating axisymmetric body is exactly solvable and use this solution to determine the orientational dynamics of surface-driven microswimmers. Swimmers with a force-dipole moment exhibit precession around the axis of the odd viscosity. In addition, pushers show bimodal chirotaxis, i.e., alignment parallel or antiparallel to the axis, while pullers orbit in a plane perpendicular to it. A chiral swimmer that itself has a broken parity symmetry can exhibit unimodal chirotaxis and always align in the same direction.

cond-mat.soft↗

arXiv2023

Entropy production and thermodynamic inference for stochastic microswimmers

The question of characterization of the degree of non-equilibrium activity in active matter systems is studied in the context of a stochastic microswimmer model driven by a chemical cycle. The resulting dynamical properties and entropy production rate unravel a complex interplay between the chemical and the hydrodynamic degrees of freedom beyond linear response, which is not captured by conventional phenomenological approaches. By studying the precision-dissipation trade-off, a new protocol is proposed in which microscopic chemical driving forces can be inferred experimentally. Our findings highlight subtleties associated with the stochastic thermodynamics of autonomous microswimmers.

cond-mat.stat-mech↗

arXiv2023

Collective synchronization of dissipatively-coupled noise-activated processes

A system of two enzymes mechanically coupled to each other in a viscous medium was recently studied, and conditions for obtaining synchronization and an enhanced average rate of the thermally-activated catalytic reactions of the enzymes were identified. The transition to synchronization occurred as the result of a global bifurcation in the underlying dynamical system. Here, we extend and generalize this idea to an arbitrary number of noise-activated cyclic processes, or oscillators, that are all coupled to each other via a dissipative coupling. The $N$ coupled oscillators are described by $N$ phase coordinates driven in a tilted washboard potential. At low $N$ and strong coupling, we find synchronization as well as an enhancement in the average speed of the oscillators. In the large $N$ regime, we show that the collective dynamics can be described through a mean-field theory, which predicts a great enhancement in the average speed. In fact, beyond a critical value of the coupling strength, noise activation becomes irrelevant and the dynamics switch to an effectively deterministic "running" mode. Finally, we study the stochastic thermodynamics of the coupled oscillators, in particular their performance with regards to the thermodynamic uncertainty relation.

cond-mat.stat-mech↗