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Michelle M. Meyer

Publications and source records attributed to Michelle M. Meyer.

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Electrical Readout Strategies of GFET Biosensors for Real-World Requirements

Graphene Field-Effect Transistors (GFETs) are increasingly employed as biochemical sensors due to their exceptional electronic properties, surface sensitivity, and potential for miniaturization. A critical challenge in deploying GFETs is determining the optimal electrical readout strategy. GFETs are typically operated with either of two modalities: one measuring current in real time (amperometric) and the other monitoring the change in voltage for charge neutrality (potential potentiometric). Here, we undertake a systematic study of the two modalities to determine their relative advantages/disadvantages towards guiding the future use of GFETs in sensing. We focus on viral proteins in wastewater, given the matrix's complexity and the growing interest in the field of wastewater surveillance. Our results show that transconductance offers far superior limits of detection (LOD) but suffers from limited reproducibility, a narrower dynamic range, and is ineffective for some viral proteins. In comparison, we find that Dirac point tracking offers higher reproducibility and superior robustness, but at a higher LOD. Interestingly, both techniques exhibit similar sensitivity, highlighting the importance of the aptamers employed. Systematic experiments also help explain differences in dynamic range and limited functionality in detecting some proteins, resulting from hidden electrophoresis, and shifting the high transconductance point away from the active region. Thus, our findings provide crucial considerations for designing and operating resilient graphene biosensors suitable for real-time pathogen monitoring in environmental scenarios.

cond-mat.other

Complete RNA inverse folding: computational design of functional hammerhead ribozymes

Nanotechnology and synthetic biology currently constitute one of the most innovative, interdisciplinary fields of research, poised to radically transform society in the 21st century. This paper concerns the synthetic design of ribonucleic acid molecules, using our recent algorithm, RNAiFold, which can determine all RNA sequences whose minimum free energy secondary structure is a user-specified target structure. Using RNAiFold, we design ten cis-cleaving hammerhead ribozymes, all of which are shown to be functional by a cleavage assay. We additionally use RNAiFold to design a functional cis-cleaving hammerhead as a modular unit of a synthetic larger RNA. Analysis of kinetics on this small set of hammerheads suggests that cleavage rate of computationally designed ribozymes may be correlated with positional entropy, ensemble defect, structural flexibility/rigidity and related measures. Artificial ribozymes have been designed in the past either manually or by SELEX (Systematic Evolution of Ligands by Exponential Enrichment); however, this appears to be the first purely computational design and experimental validation of novel functional ribozymes. RNAiFold is available at http://bioinformatics.bc.edu/clotelab/RNAiFold/.

q-bio.BM