arXiv subjects

Mikhail Dzugutov

Publications and source records attributed to Mikhail Dzugutov.

15 recordsLinked to original sources

arXiv2024

Water under hydrophobic confinement: entropy and diffusion

The properties of liquid water are known to change drastically in confined geometries. A most interesting and intriguing phenomenon is that the diffusion of water is found to be strongly enhanced by the proximity of a hydrophobic confining wall relative to the bulk diffusion. We report a molecular dynamics simulation using a classical water model investigating the water diffusion near a non-interacting smooth confining wall, which is assumed to imitate a hydrophobic surface. A pronounced diffusion enhancement is observed in the water layers adjacent to the wall. We present evidence that the observed diffusion enhancement can be accounted for, with numerical accuracy, using the universal scaling law for liquid diffusion that relates the liquid diffusion rate to the excess entropy. These results show that the scaling law, that has so far only been used for the description of the diffusion in simple liquids, can successfully describe the diffusion in water. It is thus shown that the law can be used for the description of water dynamics under nano-scale confinement which is currently a subject of intense research activity.

cond-mat.soft↗

arXiv2023

The entropic origin of the enhancement of liquid diffusion at the confining wall

We report a molecular dynamics simulation investigating the dynamics of a simple liquid in the proximity to a non-interacting smooth confining wall. A strong enhancement of the liquid diffusion is observed within the layers adjacent to the wall. We present an analysis of these results in terms of the scaling law earlier reported by one of us that relates the liquid diffusion rate to the excess entropy. It is demonstrated that this scaling law can successfully account for the observed diffusion enhancement in the liquid near to the confining wall. We show that the proximity of a confining wall results in the decrease of (the absolute value of) the local excess entropy in the liquid layers closest to the wall which induces the observed diffusion enhancement in these layers. These results thereby show that the application scope of the scaling law which has so far only been used for the description of the bulk liquid diffusion can be extended to the diffusion in liquids under nano-scale confinement.

cond-mat.mtrl-sci↗

arXiv2019

Self-assembly of orthorhombic Fddd network in simple one-component liquids

Triply periodic continuous morphologies arising a result of the microphase separation in block copolymer melts have so far never been observed self-assembled in systems of particles with spherically symmetric interaction. We report a molecular dynamics simulation of two simple one-component liquids which self-assemble upon cooling into equilibrium orthorhombic continuous network morphologies with the Fddd space group symmetry reproducing the structure of those observed in block copolymers. The finding that the geometry of constituent molecules isn't relevant for the formation of triply periodic networks indicates the generic nature of this class of phase transition.

cond-mat.soft↗

arXiv2017

A hexatic smectic phase with algebraically decaying bond-orientational order

The hexatic phase predicted by the theories of two-dimensional melting is characterised by the power law decay of the orientational correlations whereas the in-layer bond orientational order in all the hexatic smectic phases observed so far was found to be long-range. We report a hexatic smectic phase where the in-layer bond orientational correlations decay as $\propto r^{-1/4}$, in quantitative agreement with the hexatic ordering predicted by the theory for two dimensions. The phase was formed in a molecular dynamics simulation of a one-component system of particles interacting via a spherically symmetric potential. This is the first observation of the theoretically predicted two-dimensional hexatic order in a three-dimensional system.

cond-mat.soft↗

arXiv2017

Visual, user-interactive generation of bond networks in 3D particle configurations

We present a new program able to perform visual structural analysis on 3D particle systems called PASYVAT (PArticle SYstem Visual Analysis Tool). More specifically, it can select multiple interparticle distance ranges from a radial distribution function (RDF) plot and display them in 3D as bonds between the particles falling within the selected distance range, thus generating a network of bonds. This software can be used with any data set representing a system of points or other objects having a welldefined center of mass or geometric center in 3D space. In this article we describe the program and its internal structure, with emphasis on its applicability in the study of certain particle configurations, obtained from classical molecular dynamics simulation in condensed matter physics.

physics.comp-ph↗

arXiv2015

New kind of dodecagonal quasicrystal

We report a novel kind of dodecagonal quasicrystal that has so far never been observed, nor theoretically predicted. It is composed of axially stacked hexagonal particle layers, with 12-fold rotational symmetry induced by 30 degrees rotation of adjacent layers with respect to each other. The quasicrystal was produced in a molecular-dynamics simulation of a single-component system of particles interacting via a spherically-symmetric potential, as a result of a first-order phase transition from a liquid phase under constant-density cooling. This finding implies that a similarly structured quasicrystal can possibly be produced by the mesogens of the kind that produce smectic-B crystals and in a system of spherically-shaped colloidal particles with appropriately tuned potential.

cond-mat.soft↗

arXiv2015

Formation of a Columnar Liquid Crystal in a Simple One-Component System of Particles

We report a molecular dynamics simulation demonstrating that a columnar liquid crystal, commonly formed by disc-shaped molecules, can be formed by identical particles interacting via a spherically symmetric potential. Upon isochoric cooling from a low-density isotropic liquid state the simulated system performed a weak first order phase transition which produced a liquid crystal phase composed of parallel particle columns arranged in a hexagonal pattern in the plane perpendicular to the column axis. The particles within columns formed a liquid structure and demonstrated a significant intracolumn diffusion. Further cooling resulted in another first-order transition whereby the column structure became periodically ordered in three dimensions transforming the liquid-crystal phase into a crystal. This result is the first observation of a liquid crystal formation in a simple one-component system of particles. Its conceptual significance is in that it demonstrated that liquid crystals that have so far only been produced in systems of anisometric molecules, can also be formed by mesoscopic soft-matter and colloidal systems of spherical particles with appropriately tuned interatomic potential.

cond-mat.soft↗

arXiv2014

Formation of a New Archetypal Metal-Organic Framework from a Simple Monatomic Liquid

We report a molecular-dynamics simulation of a single-component system of particles interacting via a spherically symmetric potential that is found to form, upon cooling from a liquid state, a low-density porous crystalline phase. Its structure analysis demonstrates that the crystal can be described by a net with a topology that belongs to the class of topologies characteristic of the metal-organic frameworks (MOFs). The observed net is new, and it is now included in the Reticular Chemistry Structure Resource database (RCSR). The observation that a net topology characteristic of MOF crystals, which are known to be formed by a coordination-driven self-assembly process, can be reproduced by a thermodynamically stable configuration of a simple single-component system of particles opens a possibility of using these models in studies of MOF nets. It also indicates that structures with MOF topology, as well as other low-density porous crystalline structures can possibly be produced in colloidal systems of spherical particles, with an appropriate tuning of interparticle interaction.

cond-mat.mtrl-sci↗

arXiv2010

A simple monatomic ideal glass former: the glass transition by a first-order phase transition above the melting point

A liquid can form under cooling a glassy state either as a result of a continuous slowing down or by a first order polyamorphous phase transition. The second scenario has so far always been observed below the melting point where it interfered with crystalline nucleation. We report the first observation of the liquid-glass transition by a first order phase transition above the melting point. The observation was made in a molecular dynamics simulation of a one-component system with a model metallic pair potential. This is also the first observation of a simple monatomic ideal glass former -- a liquid that avoids crystallization at any cooling rate. Besides its conceptual importance, this result indicates a possibility of existence of metallic ideal glass formers.

cond-mat.soft↗

arXiv2009

A liquid-solid critical point in a simple monatomic system

It is commonly believed that the transition line separating a liquid and a solid cannot be interrupted by a critical point. This opinion is based on the traditional symmetry argument that an isotropic liquid cannot be continuously transformed into a crystal with a discrete rotational and translational symmetry. We present here a molecular-dynamics simulation of a simple monatomic system that demonstrates a liquid-solid spinodal terminating at a critical point. We show that, in the critical region, the isotropic liquid continuously transforms into a phase with a mesoscopic order similar to that of the smectic liquid crystals. We argue that the existence of both the spinodal and the critical point can be explained by the close structural proximity between the mesophase and the crystal. This indicates a possibility of finding a similar thermodynamic behaviour in gelating colloids, liquid crystals and polymers.

cond-mat.mtrl-sci↗

arXiv2009

A Structural Model for Octagonal Quasicrystals Derived from Octagonal Symmetry Elements Arising in $β$-Mn Crystallization of a Simple Monatomic Liquid

While performing molecular dynamics simulations of a simple monatomic liquid, we observed the crystallization of a material displaying octagonal symmetry in its simulated diffraction pattern. Inspection of the atomic arrangements in the crystallization product reveals large grains of the beta-Mn structure aligned along a common 4-fold axis, with 45 degree rotations between neighboring grains. These 45 degree rotations can be traced to the intercession of a second crystalline structure fused epitaxially to the beta-Mn domain surfaces, whose primitive cell has lattice parameters a = b = c = a_{beta-Mn}, alpha = beta = 90 degrees, and gamma = 45 degrees. This secondary phase adopts a structure which appears to have no known counterpart in the experimental literature, but can be simply derived from the Cr_3Si and Al_3Zr_4 structure types. We used these observations as the basis for an atomistic structural model for octagonal quasicrystals, in which the beta-Mn and the secondary phase structure unit cells serve as square and rhombic tiles (in projection), respectively. Its diffraction pattern down the octagonal axis resembles those experimentally measured. The model is unique in being consistent with high-resolution electron microscopy images showing square and rhombic units with edge-lengths equal to that of the beta-Mn unit cell. Energy minimization of this configuration, using the same pair potential as above, results in an alternative octagonal quasiperiodic structure with the same tiling but a different atomic decoration and diffraction pattern.

cond-mat.mtrl-sci↗

arXiv2008

Anomalous diffusion in supercooled liquids: a long-range localisation in particle trajectories

A statistical analysis of the geometries of particle trajectories in the supercooled liquid state is reported. We examine two structurally different fragile glass-forming liquids simulated by molecular dynamics. In both liquids, the trajectories are found to exhibit a long-range localisation distinct from the short-range localisation within the cage of nearest neighbours. This novel diffusion anomaly is interpreted as a result of the potential-energy landscape topography of fragile glass-formers where the local energy minima coalesce into metabasins - compact domains with low escape probability.

cond-mat.soft↗

arXiv2005

Universality of liquid dynamics

We investigate the origin of the Stokes-Einstein relation in liquids. The hard-sphere dynamics is analyzed using a new measure of structural relaxation - the minimum Euclidean distance between configurations of particles. It is shown that the universal relation between the structural relaxation and diffusion in liquids is caused by the existence of one dominating length scale imposed by the structural correlations and associated with de Gennes narrowing. We demonstrate that this relation can be described by a model of independent random walkers under the single-occupancy constraint.

cond-mat.soft↗

arXiv2002

The favoured cluster structures of model glass formers

We examine the favoured cluster structures for two new potentials, which both behave as monatomic model glass-formers in bulk. We find that the oscillations in the interatomic potential lead to global minima that are non-compact arrangements of linked 13-atom icosahedra. We find that the structural properties of the clusters correlate with the glass-forming propensities of the potentials, and with the fragilities of the corresponding supercooled liquids.

cond-mat↗

arXiv2002

Decoupling of diffusion from structural relaxation and spatial heterogeneity in a supercooled simple liquid

We report a molecular dynamics simulation of a supercooled simple monatomic glass-forming liquid. It is found that the onset of the supercooled regime results in formation of distinct domains of slow diffusion which are confined to the long-lived icosahedrally structured clusters associated with deeper minima in the energy landscape. As these domains, possessing a low-dimensional geometry, grow with cooling and percolate below $T_c$, the critical temperature of the mode coupling theory, a sharp slowing down of the structural relaxation relative to diffusion is observed. It is concluded that this latter anomaly cannot be accounted for by the spatial variation in atomic mobility; instead, we explain it as a direct result of the configuration-space constraints imposed by the transient structural correlations. We also conjecture that the observed tendency for low-dimensional clustering may be regarded as a possible mechanism of fragility.

cond-mat.dis-nn↗