arXiv subjects

Mikhail V. Ivanchenko

Publications and source records attributed to Mikhail V. Ivanchenko.

6 recordsLinked to original sources

arXiv2020

Formation of working memory in a spiking neuron network accompanied by astrocytes

We propose a biologically plausible computational model of working memory (WM) implemented by the spiking neuron network (SNN) interacting with a network of astrocytes. SNN is modelled by the synaptically coupled Izhikevich neurons with a non-specific architecture connection topology. Astrocytes generating calcium signals are connected by local gap junction diffusive couplings and interact with neurons by chemicals diffused in the extracellular space. Calcium elevations occur in response to the increase of concentration of a neurotransmitter released by spiking neurons when a group of them fire coherently. In turn, gliotransmitters are released by activated astrocytes modulating the strengths of synaptic connections in the corresponding neuronal group. Input information is encoded as two-dimensional patterns of short applied current pulses stimulating neurons. The output is taken from frequencies of transient discharges of corresponding neurons. We show how a set of information patterns with quite significant overlapping areas can be uploaded into the neuron-astrocyte network and stored for several seconds. Information retrieval is organised by the application of a cue pattern representing the one from the memory set distorted by noise. We found that successful retrieval with level of the correlation between recalled pattern and ideal pattern more than 90% is possible for multi-item WM task. Having analysed the dynamical mechanism of WM formation, we discovered that astrocytes operating at a time scale of a dozen of seconds can successfully store traces of neuronal activations corresponding to information patterns. In the retrieval stage, the astrocytic network selectively modulates synaptic connections in SNN leading to the successful recall. Information and dynamical characteristics of the proposed WM model agrees with classical concepts and other WM models.

q-bio.NC↗

arXiv2020

LUDB: a new open-access validation tool for electrocardiogram delineation algorithms

We report Lobachevsky University Database (LUDB) of ECG signals, an open tool for validating ECG delineation algorithms, that is superior to the existing publicly available data bases in several aspects. LUDB contains 200 recordings of 10-second 12-lead electrocardiograms (ECG) from different subjects, representative of a variety of signal morphologies. The boundaries and peaks of QRS complexes and P and T waves are manually annotated by cardiologists for all recordings and independently for each lead, and all records received an expert classification by abnormalities. We present a case study for the recently proposed wavelet-based algorithm and the broadly used ecg-kit tool, and demonstrate the advantage of multi-lead ECG data analysis. LUDB contributes to the diversity of public databases employed in developing and validating novel ECG analysis algorithms, including the most advanced based on deep learning neural networks.

q-bio.QM↗

arXiv2018

Finding morphology points of electrocardiographic signal waves using wavelet analysis

A new algorithm has been developed for delineation of significant points of various electrocardiographic signal (ECG) waves, taking into account information from all available leads and providing similar or higher accuracy in comparison with other modern technologies. The test results for the QT database show a sensitivity above 97% when detecting ECG wave peaks and 96% for their onsets and offsets, as well as better positive predictive value compared to the previously known algorithms. In contrast to the previously published algorithms, the proposed approach also allows one to determine the morphology of waves. The segmentation mean errors of all significant points are below the tolerances defined by the Committee of General Standards for Electrocardiography (CSE).

q-bio.QM↗

arXiv2016

Interplay of inhibition and multiplexing : Largest eigenvalue statistics

The largest eigenvalue of a network provides understanding to various dynamical as well as stability properties of the underlying system. We investigate an interplay of inhibition and multiplexing on the largest eigenvalue statistics of networks. Using numerical experiments, we demonstrate that presence of the inhibitory coupling may lead to a very different behaviour of the largest eigenvalue statistics of multiplex networks than those of the isolated networks depending upon network architecture of the individual layer. We demonstrate that there is a transition from the Weibull to the Gumbel or to the Frechet distribution as networks are multiplexed. Furthermore, for denser networks, there is a convergence to the Gumbel distribution as network size increases indicating higher stability of larger systems.

physics.soc-ph↗

arXiv2014

Distributed classifier based on genetically engineered bacterial cell cultures

We describe a conceptual design of a distributed classifier formed by a population of genetically engineered microbial cells. The central idea is to create a complex classifier from a population of weak or simple classifiers. We create a master population of cells with randomized synthetic biosensor circuits that have a broad range of sensitivities towards chemical signals of interest that form the input vectors subject to classification. The randomized sensitivities are achieved by constructing a library of synthetic gene circuits with randomized control sequences (e.g. ribosome-binding sites) in the front element. The training procedure consists in re-shaping of the master population in such a way that it collectively responds to the "positive" patterns of input signals by producing above-threshold output (e.g. fluorescent signal), and below-threshold output in case of the "negative" patterns. The population re-shaping is achieved by presenting sequential examples and pruning the population using either graded selection/counterselection or by fluorescence-activated cell sorting (FACS). We demonstrate the feasibility of experimental implementation of such system computationally using a realistic model of the synthetic sensing gene circuits.

q-bio.MN↗

arXiv2006

Synchronized bursts following instability of synchronous spiking in chaotic neuronal networks

We report on the origin of synchronized bursting dynamics in various networks of neural spiking oscillators, when a certain threshold in coupling strength is exceeded. These ensembles synchronize at relatively low coupling strength and lose synchronization at stronger coupling via spatio-temporal intermittency. The latter transition triggers multiple-timescale dynamics, which results in synchronized bursting with a fractal-like spatio-temporal pattern of spiking. Implementation of an appropriate technique of separating oscillations on different time-scales allows for quantitative analysis of this phenomenon. We show, that this phenomenon is generic for various network topologies from regular to small-world and scale-free ones and for different types of coupling.

nlin.CD↗