arXiv subjects

Milana Bazayeva

Publications and source records attributed to Milana Bazayeva.

6 recordsLinked to original sources

arXiv2026

I-QMapper: Error-Aware Layout Optimization and Device Diagnostics for NISQ Hardware

Achieving high-fidelity execution on noisy intermediate-scale quantum (NISQ) hardware requires careful selection of physical qubit layouts, as gate errors, readout errors, and coherence times vary across the device and drift over time. Currently, qubit mapping is performed either through manual inspection of device calibration data or through automated layout pipelines, neither of which provides integrated, interactive layout visualization combined with calibration analytics. In this work, we present the Interactive Quantum Mapper (I-QMapper), a Jupyter-based, open-source tool for noise-aware layout selection, visualization, and analysis on superconducting quantum hardware. I-QMapper offers two operating modes: a general-purpose mode for arbitrary circuits, and a dedicated mode for quantum-chemistry applications, specifically tailored to the Local Unitary Cluster Jastrow (LUCJ) ansatz. Within each mode, a Design panel supports interactive layout construction, while an Error panel provides calibration analytics through four temporal viewing modes (Live, Snapshot, Intraday, and Multi-day range) together with threshold filtering and delta-mode comparison for drift identification. Each layout receives a Layout-Quality Score (LQS) that aggregates the readout and two-qubit gate errors of the layout into a single quality value. Starting from the automatic LUCJ circuit-generation provided by IBM Quantum, we extend it to a multi-programming setting in which multiple circuits are mapped onto a single quantum processing unit (QPU). I-QMapper further supports side-by-side visualization of two quantum backends and layout comparison, and session export for experimental reproducibility. By combining interactive exploration with calibration analytics, I-QMapper aims to support both rapid layout prototyping and informed noise-aware experimental design on NISQ devices.

quant-ph↗

arXiv2026

Quantum Computing Enabled ab initio Molecular Dynamics Simulations

We demonstrate a quantum-classical workflow for ab initio molecular dynamics (AIMD) in which quantum measurements from a chemistry-inspired LUCJ ansatz are post-processed using Sample-based Quantum Diagonalization (SQD) to recover determinant subspaces and deliver energies and analytical nuclear gradients for dynamics. As an exact benchmark, we use full configuration interaction (FCI) in the STO-3G basis, enabling a direct assessment of the accuracy of SQD. In gas-phase benchmarks, SQD reproduces FCI energies and gradients to within 1 kcal mol$^{-1}$ of the FCI reference and yields stable AIMD trajectories. In explicit-solvent QM/MM simulations, SQD retains this agreement, matching FCI energy fluctuations and RMS gradient profiles and reproducing solute-solvent structure as quantified by radial distribution functions. Overall, these benchmarks establish LUCJ+SQD as a practical route for integrating current quantum hardware into QM/MM molecular dynamics and provide an early demonstration of condensed-phase QM/MM dynamics driven by a quantum electronic-structure engine.

physics.chem-ph↗

arXiv2026

Quantum Computations on Fusion Blanket Molten Salts

Molten salts such as FLiBe (2LiF--BeF$_2$) are leading blanket materials for breeding and recovering tritium in fusion reactors. Predicting tritium speciation requires accurate electronic ground-state energies for representative molten-salt clusters, a demanding task for correlated electronic-structure methods. Here we report the first application of heterogeneous quantum--classical computing to tritium binding in FLiBe. Clusters drawn from ab initio molecular dynamics are partitioned by an embedded-wavefunction (EWF) method into atom-centered fragments, and the largest fragments are solved on IBM quantum hardware using extended sample-based quantum diagonalization (ext-SQD). Across nine clusters, the heterogeneous quantum--classical workflow reproduces fragment ground-state energies with agreement to full configuration interaction within 0.7~kcal/mol and a mean absolute deviation of 0.3~kcal/mol. In contrast, fragmented and unfragmented conformational energy differences and tritium binding energies differ by 12~kcal/mol and 110~kcal/mol on average, respectively, identifying fragment construction rather than fragment solution as the dominant source of algorithmic bias. To the best of our knowledge, this is the first such demonstration for a charged ionic system and in particular an inorganic molten salt, where electrostatic and polarization effects make the accurate treatment of electronic correlation particularly challenging. These results also identify areas of future research towards an accurate and scalable quantum--classical workflow to compute free-energy estimates of tritium speciation in fusion blankets.

quant-ph↗

arXiv2026

A Quantum Multi-Programming Framework to Maximize Quantum Resources for the LUCJ Ansatz

In the context of quantum computing, efficient resource management is crucial for optimizing throughput on cloud-based platforms and maximizing hardware utilization. In the present work, we propose an approach to tackle quantum chemistry problems via quantum multi-programming of the Local Unitary Cluster Jastrow (LUCJ) ansätze. The ground-state energy of the molecular system is obtained via Sample-based quantum diagonalization (SQD), further refined by its extended version (ext-SQD). Building upon the Qiskit Experiments package, which already supports parallel execution functionality for general tasks, we developed a novel parallel experiment class tailored for quantum chemistry problems. Cross-talk is a known issue in the multi-programming frameworks and can corrupt the ground-energy estimation of the simulated systems. To assess its impact within our approach, we simulated two conformations of the ethanol molecule: one at the equilibrium state (EtOH$_{Eq}$), and one with the O-H bond stretched to 1.2 ${Å}$ (EtOH$_{1.2}$). We defined three different layouts that we executed in a randomized fashion, alternating serial and parallel execution within 10 independent replicates. The single modality of each circuit was kept as a baseline to evaluate the effect of cross-talk induced by quantum multi-programming. The energies obtained at the first-, last- and ext-SQD iteration were compared to the classical Heat-bath Configuration Interaction (HCI) reference. Our findings highlight the viability of a quantum multi-programming workflow for quantum chemistry as the robust post-processing protocol effectively mitigates possible cross-talk induced noise. At the final step of the configuration recovery process, the energy difference relative to the HCI reference is negligible, within 0.001 kcal/mol.

quant-ph↗

arXiv2026

Protein-Ligand Free Energy Perturbation on Quantum Hardware

The use of free energy perturbation (FEP) methods to study protein-ligand complexes is one of the most important tools in structure-based drug design. Because FEP methods typically rely on force fields, they may suffer from force field parameter-related issues. Herein, we present a quantum mechanics/molecular mechanics (QM/MM) hybrid method to overcome deficiencies in force-field models by using QM bookending approaches on both classical and quantum hardware. In the MM part of this QM/MM FEP method, AMBER is used to simulate the protein receptor and the unperturbed moiety of the ligand, with the ff19SB and GAFF2 force fields. In the QM part, QUICK was used to conduct Hartree-Fock (HF) calculations, followed by heat-bath configuration interaction (HCI) as a benchmark on classical devices. To enable the HCI function in QUICK, we developed a Python-based interface to execute HCI from IBM's qiskit-addon-dice-solver. Moreover, the same interface also enabled this work to execute QM/MM FEP calculations on quantum hardware using the Local Unitary Cluster Jastrow (LUCJ) ansatz, followed by sample-based diagonalization (SQD) and extended-SQD (extSQD) post-processing. Using a series of thermolysis inhibitors as an example, we find reasonable agreement with experiment between the classical HCI method and the LUCJ-SQD/extSQD method, with the latter yielding a result closer to the experimental value. The execution time between the HCI-based FEP method and the LUCJ-SQD/extSQD-based FEP method is also comparable, indicating a high potential for utility in the noisy intermediate-scale quantum (NISQ) era.

quant-ph↗

arXiv2025

Quantum-Centric Alchemical Free Energy Calculations

In the present work, we present a hybrid quantum-classical workflow aimed at improving the accuracy of alchemical free energy (AFE) predictions by incorporating configuration interaction (CI) simulations using the book-ending correction method. This approach applies the Multistate Bennett Acceptance Ratio (MBAR) over a coupling parameter λ to smoothly transition the system from molecular mechanics (MM) (λ = 0) to a quantum mechanics (QM) (λ = 1) description. The resulting correction is then applied to the classically (MM) computed AFE to account for the more accurate QM treatment. The standard book-ending procedure uses AMBER to simulate the MM region, and QUICK, AMBER's default QM engine, to handle the QM region with either the Hartree-Fock (HF) method or density functional theory (DFT). In this work, we introduce a novel interface to QUICK, via sander, that enables CI simulations, and can operate in two ways: A) via PySCF backend to perform full configuration interaction (FCI) using conventional computing resources, B) quantum-centric sample-based quantum diagonalization (SQD) workflow via Qiskit which leverages both quantum hardware and post-processing on conventional computing resources for CI simulations. In this workflow QUICK performs most steps of the calculations, but at user-defined intervals, it redirects the computation to either FCI or SQD backend to get the CI result. We computed the book-end corrections for the hydration free energy (HFE) of three small organic molecules (ammonia, methane, and water) to benchmark the proposed approach and demonstrate how quantum-computers can be used in AFE calculations. We believe that this approach can be scaled to more complex systems like drug-receptor interactions in future studies.

physics.chem-ph↗