arXiv subjects

Miles Cranmer

Publications and source records attributed to Miles Cranmer.

At least 19 recordsLinked to original sources

arXiv2026

Single Frequency CMB Foreground Removal with Inter-scale Machine Learning

Accurate measurements of Cosmic Microwave Background (CMB) B-mode polarization, a key probe of inflationary physics, are hindered by complex Galactic dust foregrounds. Traditional foreground removal with Internal Linear Combination (ILC) fully preserves the primordial signal but requires multi-frequency data and is limited to two-point statistics. We present a novel way to estimate and remove foregrounds at single frequency using signal-preserving machine learning that leverages inter-scale correlations. Using the DustFilaments simulations, we train CNNs to reconstruct large-scale foregrounds ($\ell < 200$) from small-scales ($\ell > 200$). We quantify the effectiveness of foreground removal with the residual foreground power, $f_{\rm{resid}}$, which gives the fraction of foreground power remaining after removal. Predictions using only small-scale $B$-modes achieve $f_{\rm{resid}}\simeq 0.704$, while adding temperature and $E$-modes decreases it to $f_{\rm{resid}} \simeq 0.376$. These results are still higher than the spatial ILC, which leverages multi-frequency data at Simons-Observatory-like frequencies. However, a hybrid network that uses both multi-frequency and inter-scale correlations attains $f_{\rm{resid}}=4.71\times10^{-4}$ when using $B$-mode inputs alone, and $3.62\times10^{-4}$ when using temperature and $E/B$-mode inputs. This network achieves a residual power of $\sim 7\times$ lower than ILC, while inheriting ILC's signal-preserving property. This is $\sim 2$--$3\times$ lower than a network that only uses multi-frequency inputs, demonstrating that correlations across scale are not redundant with correlations across frequency and that our techniques are complementary to multi-frequency foreground removal. However, this is achieved only for DustFilments and network generalization across simulations remains a key challenge for robust ML-based foreground removal. (abridged)

astro-ph.CO↗

arXiv2026

Machine Can Automatically Discover Parametric Functions to Model HEP Data

In HEP data analyses, finding an adequate function to model binned data has largely relied on a manual process: guess a functional form by intuition, fit, examine, then repeat until successful. We show that this iterative process can be automated by a machine using symbolic regression, which performs a data-driven search over function space without requiring prior knowledge of what an adequate function should look like. We present the SymbolFit package, which pairs symbolic regression with uncertainty modeling to target HEP analysis use cases, and demonstrate it on the CMS and ATLAS Run 2 dijet spectra: 560 independent seeded runs across seven simple fit configurations generated over 1000 functions fitting the spectra with $\chi^2/\text{NDF}\approx 1$, and 111 of the runs rediscovered the very dijet and UA2 functions used in published dijet searches.

hep-ex↗

arXiv2026

A hierarchical Bayesian framework for cosmology using Type 1 AGN variability

Independent luminosity-distance probes beyond the Type Ia supernova range are needed to test cosmic expansion at high redshift. Type 1 AGN are abundant at $z>2$, but their use for cosmology requires standardizable observables with controlled scatter, redshift dependence, and measurement uncertainty. We present a hierarchical Bayesian framework for cosmology using AGN variability, based on the empirical anti-correlation between optical/UV variability amplitude and luminosity. The method targets the moderate-baseline regime of current wide-field time-domain surveys, where individual light curves cannot typically identify the full long-timescale stochastic process, but can constrain finite-window brightness and short-lag variability. Each light curve is fitted independently to obtain posterior samples of these summaries, which are then importance-reweighted under a population model relating variability to luminosity, rest-frame wavelength, intrinsic scatter, and the assumed distance-redshift relation. This framework propagates object-level uncertainty while avoiding repeated light-curve likelihood evaluations during cosmological inference, making catalogue-scale analyses feasible. Using Gaia DR3-like G-band simulations matched to real Gaia cadences, noise properties, and quality cuts, we show that finite-baseline light curves are more robustly summarized by window-averaged brightness and short-lag variability than by the separate long-timescale parameters of stochastic models. End-to-end closure tests recover the injected variability-luminosity relation, intrinsic scatter, and distance-redshift parameters up to the expected calibration degeneracies. This Gaia G-band analysis establishes a proof of concept for AGN-variability distances in the moderate-baseline survey regime, with the main gains expected from Gaia DR4, ZTF, DESI-selected AGN samples, and Rubin/LSST-era data.

astro-ph.CO↗

arXiv2026

Otter Weather: Skillful and Computationally Efficient Medium-Range Weather Forecasting

State-of-the-art medium-range AI weather models can outperform traditional Numerical Weather Prediction (NWP) but require massive training budgets. This restricts usage for under-resourced groups and severely limits fast model iteration. Here we develop Otter Weather, a highly efficient spatiotemporal forecasting model designed to democratise high-performance weather prediction with AI. Evaluated on ERA5 reanalysis data at 1.5{\deg} resolution using standard WeatherBench protocols, the Otter family significantly advances the skill-compute Pareto frontier. The deterministic version outperforms the best NWP baseline by 9.6% at a 24-hour lead time while requiring fewer than 3.5 A100-days for training. It provides a 2x efficiency gain over lightweight AI models and a 100-fold reduction in compute compared to resource-intensive frontier architectures. We extend these efficiency gains into probabilistic forecasting by training via the Continuous Ranked Probability Score (CRPS). Scaling to a larger architecture, Otter-XL achieves a 9.7% CRPS improvement over the IFS ENS baseline. This yields an almost two-fold increase in predictive skill over comparable lightweight models at similar compute budgets. Otter-XL also outperforms frontier architectures like GenCast by over 2%, while using an order of magnitude less compute. Finally, Otter is applied out-of-the-box to a complex acoustic scattering PDE task where it outperforms a state-of-the-art foundation modelling approach, suggesting that the advances made here might apply across a range of scientific domains.

cs.LG↗

arXiv2026

ThousandWorlds: A benchmark for climate emulation of potentially habitable exoplanets

The search for life beyond Earth will depend on detecting faint signatures in the atmospheres of potentially habitable exoplanets. Interpreting those signatures requires understanding the host planet's climate: the same molecule may signal life on one planet and abiotic chemistry on another. Global climate models (GCMs) provide this understanding, but individual runs can require up to millions of core-hours and substantial domain expert time. Machine-learning emulators could remove this bottleneck, but progress has been limited by the absence of a curated, multi-model exoclimate dataset. We introduce ThousandWorlds, an ML-ready benchmark for exoclimate emulation and for the broader regime of low-data, multi-simulator, parameter-to-field regression. The dataset contains approximately 1800 simulations from five GCMs, mapping eight planet parameters to 3D atmospheric fields including temperature, humidity, winds, clouds, and radiation. Three nested subsets define progressively harder challenges: single-simulator regression, multi-simulator regression with complete observations, and multi-simulator regression with structured missingness. We propose two evaluation protocols: one for ranking methods, and one that measures performance relative to the disagreement between GCMs themselves. We evaluate seven baselines spanning simple methods, deep learning, and Gaussian processes. GP-based methods perform best, suggesting that ThousandWorlds exposes a regime where off-the-shelf deep learning does not yet succeed. Data: https://doi.org/10.57967/hf/8695. Code: https://github.com/edstevenson/ThousandWorlds.

cs.LG↗

arXiv2026

Gaussian Process Latent Factor Regression for Low-Data, High-Dimensional Output Problems

In the sciences, regression tasks often require predicting high-dimensional outputs from few training examples. Multi-output Gaussian processes excel in low-data regimes but typically struggle with high-dimensional outputs. Compress-then-predict pipelines such as PCA-GP (principal component analysis plus Gaussian process regression) handle high dimensionality, but rely on bases optimized for reconstruction rather than prediction. To address this gap, we propose a model that represents each output as a linear-Gaussian decoding of a low-dimensional latent state drawn from a Gaussian process prior. By analytically marginalizing the decoder weights, we couple compression and prediction in a single objective that scales to high-dimensional outputs. We refer to this model as Gaussian process latent factor regression (GPLFR). We demonstrate GPLFR by building the first spatially resolved emulator of global climate models for rocky exoplanets.

cs.LG↗

arXiv2026

Emergent Transfer of a Physics Foundation Model from Simulation to Laboratory Turbulence

Whether physics foundation models can be usefully deployed on laboratory experiments remains an open question for scientific machine learning (ML). We test this question on the Rayleigh-Taylor instability (RTI), a ubiquitous and demanding fluid instability seen from tabletop flows to supernova explosions, in which small perturbations at a density interface grow into chaotic, multiscale mixing as a lighter fluid accelerates into a heavier one. Standard ML models struggle with RTI, and despite over a century of theoretical, numerical, and experimental work, it carries an unresolved discrepancy between simulation and experiment: the late-time mixing growth rate, $\alpha$, measured in most laboratory experiments ($\sim$ 0.06-0.07), is roughly three times the value from idealized direct numerical simulations (DNS, $\sim$ 0.02). The gap's origin remains debated. These properties make RTI a stringent test for a question that matters well beyond RTI: can foundation models trained only on simulations generalise to sparse, messy, and noisy laboratory settings? We finetune Walrus, a foundation model for continuum dynamics, on three or fewer DNS realizations and recover key RTI physics over long rollouts. Applied zero-shot to sliding-barrier laboratory data, the finetuned model leaves the DNS-like regime and enters the observed growth band, having never seen a single experimental sample. These results provide independent, data-driven evidence that initial conditions play a crucial role in the longstanding sim-experiment gap in $\alpha$. The model also generalises zero-shot to stable stratification, a buoyancy regime absent from training, correctly slowing mixing-layer growth. Together, our results show that foundation models can generalise well beyond their training data, predicting laboratory behavior and unseen physical regimes, opening new ways to probe longstanding simulation-experiment gaps.

physics.flu-dyn↗

arXiv2026

CTF4Nuclear: Common Task Framework for Nuclear Fission and Fusion Models

The demand for clean energy is ever increasing, with new nuclear technologies presenting a complementary solution to renewable energies. However, designing and operating these systems is exceptionally difficult, given the complexity of the physical phenomena that interact to form the system dynamics. While high-fidelity simulations help to understand the non-linear, multi-physics interactions within a reactor, they are computationally expensive and rarely suitable for real-time applications. Furthermore, model-based approaches are inherently sensitive to simplifying assumptions required to derive their governing equations and parameters, leading to inevitable discrepancies with real-world measurements. In contrast, Machine Learning (ML) methods have the potential to generate reliable surrogate models which may be able to quickly predict the system's behaviour. However, the number of data-driven methods that can potentially be used for this task is large and diverse. In a safety-critical setting such as nuclear engineering, a fair comparison of different ML methods, and a clear understanding of their advantages and limitations, is of paramount importance. To address this, we introduce a Common Task Framework (CTF) for ML in nuclear engineering, building upon previous efforts in dynamical systems and seismology. This CTF considers a curated set of datasets from different nuclear and nuclear-adjacent systems. The CTF evaluates the performance of a method on 12 established metrics, alongside a new paradigm focused on system monitoring from sparse measurements only. We illustrate the framework by benchmarking standard ML baselines against these datasets, revealing current method limitations. Our vision is to replace ad hoc comparisons with standardized evaluations on hidden test sets, raising the bar for rigour and reproducibility in scientific ML for the nuclear industry.

cs.LG↗

arXiv2026

MIMIC: A Generative Multimodal Foundation Model for Biomolecules

Biological function emerges from coupled constraints across sequence, structure, regulation, evolution, and cellular context, yet most foundation models in biology are trained within one modality or for a fixed forward task. We present MIMIC, a generative multimodal foundation model trained on our newly curated and aligned dataset, LORE, linking nucleic acid, protein, evolutionary, structural, regulatory, and semantic/contextual modalities within partially observed biomolecular states. MIMIC uses a split-track encoder-decoder architecture to condition on arbitrary subsets of observed modalities and reconstruct or generate missing components of molecular state across the genome, transcriptome, and proteome. Multimodal conditioning consistently improves MIMIC's sequence reconstruction relative to sequence-only inputs, while its learned representations enable state-of-the-art performance on RNA and protein downstream tasks. MIMIC achieves state-of-the-art splicing prediction, and its joint generative formulation enables isoform-aware inference that further improves performance. Beyond prediction, the same generative framework supports constrained design. For RNA, MIMIC identifies corrective edits in a clinically relevant HBB splice-disrupting mutation without reverting it by using evolutionary and structural signals. For proteins, jointly conditioning on shape and surface chemistry of PD-L1 and hACE2 binding sites produces diverse, high-confidence sequences with strong in silico support for target binding. Finally, MIMIC uses experimental context as semantic conditioning to model assay-dependent RNA chemical probing, rather than treating context as a fixed output. Together, these results position MIMIC's aligned multimodal generative modeling as a strong foundation for unifying representation learning, conditional prediction, and constrained biomolecular design within a single model.

cs.AI↗

arXiv2026

On the Value of Tokeniser Pretraining in Physics Foundation Models

We investigate the impact of tokeniser pretraining on the accuracy and efficiency of physics emulation. Modern high-resolution simulations produce vast volumes of data spanning diverse physical regimes and scales. Training foundation models to learn the dynamics underlying such data enables the modelling of complex multiphysics phenomena, especially in data-limited settings. The emerging class of physics foundation models typically aims to learn two tasks jointly: (i) extracting compact representations of high-resolution spatiotemporal data, and (ii) capturing governing physical dynamics. However, learning both tasks from scratch simultaneously can impede the effectiveness of either process. We show that pretraining the tokeniser with an autoencoding objective prior to training the dynamics model enhances computational efficiency for physics emulation. Notably, the magnitude of this benefit depends on domain alignment: pretraining on the same physical system as the emulation task yields the largest improvements, while pretraining on other systems provides moderate gains. In-domain pretraining reduces VRMSE by 64% after 10,500 training steps compared to training from scratch. To our knowledge, this is the first systematic investigation of tokeniser pretraining for physics foundation models. We further introduce flexible spatiotemporal compression operations that extend causal convolutions to support runtime-adjustable compression ratios, enabling efficient adaptation to diverse downstream tasks. Our findings provide practical guidance for training efficient physics emulators and highlight the importance of strategic pretraining data selection.

cs.LG↗

arXiv2026

Probabilistic Retrofitting of Learned Simulators

Dominant approaches for modelling Partial Differential Equations (PDEs) rely on deterministic predictions, yet many physical systems of interest are inherently chaotic and uncertain. While training probabilistic models from scratch is possible, it is computationally expensive and fails to leverage the significant resources already invested in high-performing deterministic backbones. In this work, we adopt a training-efficient strategy to transform pre-trained deterministic models into probabilistic ones via retrofitting with a proper scoring rule: the Continuous Ranked Probability Score (CRPS). Crucially, this approach is architecture-agnostic: it applies the same adaptation mechanism across distinct model backbones with minimal code modifications. The method proves highly effective across different scales of pre-training: for models trained on single dynamical systems, we achieve 20-54% reductions in rollout CRPS and up to 30% improvements in variance-normalised RMSE (VRMSE) relative to compute-matched deterministic fine-tuning. We further validate our approach on a PDE foundation model, trained on multiple systems and retrofitted on the dataset of interest, to show that our probabilistic adaptation yields an improvement of up to 40% in CRPS and up to 15% in VRMSE compared to deterministic fine-tuning. Validated across diverse architectures and dynamics, our results show that probabilistic PDE modelling need not require retraining from scratch, but can be unlocked from existing deterministic backbones with modest additional training cost.

cs.LG↗

arXiv2026

SymTorch: Symbolic Distillation of Neural Networks

What mathematical functions do neural network components learn? Symbolic distillation addresses this question by expressing neural network components with interpretable, closed-form mathematical expressions that expose the functional structure learned during training. We develop symbolic distillation as a systematic, architecture-agnostic methodology, and release our approach as the open-source SymTorch package - a PySR-powered library built natively for the PyTorch ecosystem. Applying this methodology across diverse architectures, we find that SymTorch is successful in the automated discovery of physical laws. Specifically, our approach (1) recovers pairwise interaction forces from graph neural networks trained on empirical $n$-body observations, (2) distills the exact closed-form PDE/ODE solutions of multiple physical systems, including the value of constants, from physics-informed neural networks trained on sparse data, and (3) uncovers the chaotic dynamics of the Lorenz system from high-dimensional data, ultimately outperforming the base neural network on downstream prediction tasks. We further demonstrate the utility of our framework for model interpretability by providing an optimized implementation of SLIME - a symbolic extension to the LIME explainability method. SLIME consistently outperforms LIME across predictive metrics across eight popular classification and regression benchmarks, while still providing an interpretable local symbolic model. Lastly, we investigate replacing transformer MLP layers with symbolic surrogates: replacing 1-7 layers with symbolic approximations yields 2-19\% throughput improvements and up to 18.7\% VRAM reduction, with the resulting hybrid models lying on the Pareto front of throughput versus perplexity among open-source LLMs of comparable scale.

cs.LG↗

arXiv2025

The Seismic Wavefield Common Task Framework

Seismology faces fundamental challenges in state forecasting and reconstruction (e.g., earthquake early warning and ground motion prediction) and managing the parametric variability of source locations, mechanisms, and Earth models (e.g., subsurface structure and topography effects). Addressing these with simulations is hindered by their massive scale, both in synthetic data volumes and numerical complexity, while real-data efforts are constrained by models that inadequately reflect the Earth's complexity and by sparse sensor measurements from the field. Recent machine learning (ML) efforts offer promise, but progress is obscured by a lack of proper characterization, fair reporting, and rigorous comparisons. To address this, we introduce a Common Task Framework (CTF) for ML for seismic wavefields, demonstrated here on three distinct wavefield datasets. Our CTF features a curated set of datasets at various scales (global, crustal, and local) and task-specific metrics spanning forecasting, reconstruction, and generalization under realistic constraints such as noise and limited data. Inspired by CTFs in fields like natural language processing, this framework provides a structured and rigorous foundation for head-to-head algorithm evaluation. We evaluate various methods for reconstructing seismic wavefields from sparse sensor measurements, with results illustrating the CTF's utility in revealing strengths, limitations, and suitability for specific problem classes. Our vision is to replace ad hoc comparisons with standardized evaluations on hidden test sets, raising the bar for rigor and reproducibility in scientific ML.

cs.LG↗

arXiv2025

Physics Steering: Causal Control of Cross-Domain Concepts in a Physics Foundation Model

Recent advances in mechanistic interpretability have revealed that large language models (LLMs) develop internal representations corresponding not only to concrete entities but also distinct, human-understandable abstract concepts and behaviour. Moreover, these hidden features can be directly manipulated to steer model behaviour. However, it remains an open question whether this phenomenon is unique to models trained on inherently structured data (ie. language, images) or if it is a general property of foundation models. In this work, we investigate the internal representations of a large physics-focused foundation model. Inspired by recent work identifying single directions in activation space for complex behaviours in LLMs, we extract activation vectors from the model during forward passes over simulation datasets for different physical regimes. We then compute "delta" representations between the two regimes. These delta tensors act as concept directions in activation space, encoding specific physical features. By injecting these concept directions back into the model during inference, we can steer its predictions, demonstrating causal control over physical behaviours, such as inducing or removing some particular physical feature from a simulation. These results suggest that scientific foundation models learn generalised representations of physical principles. They do not merely rely on superficial correlations and patterns in the simulations. Our findings open new avenues for understanding and controlling scientific foundation models and has implications for AI-enabled scientific discovery.

cs.LG↗

arXiv2025

Predicting partially observable dynamical systems via diffusion models with a multiscale inference scheme

Conditional diffusion models provide a natural framework for probabilistic prediction of dynamical systems and have been successfully applied to fluid dynamics and weather prediction. However, in many settings, the available information at a given time represents only a small fraction of what is needed to predict future states, either due to measurement uncertainty or because only a small fraction of the state can be observed. This is true for example in solar physics, where we can observe the Sun's surface and atmosphere, but its evolution is driven by internal processes for which we lack direct measurements. In this paper, we tackle the probabilistic prediction of partially observable, long-memory dynamical systems, with applications to solar dynamics and the evolution of active regions. We show that standard inference schemes, such as autoregressive rollouts, fail to capture long-range dependencies in the data, largely because they do not integrate past information effectively. To overcome this, we propose a multiscale inference scheme for diffusion models, tailored to physical processes. Our method generates trajectories that are temporally fine-grained near the present and coarser as we move farther away, which enables capturing long-range temporal dependencies without increasing computational cost. When integrated into a diffusion model, we show that our inference scheme significantly reduces the bias of the predicted distributions and improves rollout stability.

cs.LG↗

arXiv2025

Walrus: A Cross-Domain Foundation Model for Continuum Dynamics

Foundation models have transformed machine learning for language and vision, but achieving comparable impact in physical simulation remains a challenge. Data heterogeneity and unstable long-term dynamics inhibit learning from sufficiently diverse dynamics, while varying resolutions and dimensionalities challenge efficient training on modern hardware. Through empirical and theoretical analysis, we incorporate new approaches to mitigate these obstacles, including a harmonic-analysis-based stabilization method, load-balanced distributed 2D and 3D training strategies, and compute-adaptive tokenization. Using these tools, we develop Walrus, a transformer-based foundation model developed primarily for fluid-like continuum dynamics. Walrus is pretrained on nineteen diverse scenarios spanning astrophysics, geoscience, rheology, plasma physics, acoustics, and classical fluids. Experiments show that Walrus outperforms prior foundation models on both short and long term prediction horizons on downstream tasks and across the breadth of pretraining data, while ablation studies confirm the value of our contributions to forecast stability, training throughput, and transfer performance over conventional approaches. Code and weights are released for community use.

cs.LG↗

arXiv2025

The Denario project: Deep knowledge AI agents for scientific discovery

We present Denario, an AI multi-agent system designed to serve as a scientific research assistant. Denario can perform many different tasks, such as generating ideas, checking the literature, developing research plans, writing and executing code, making plots, and drafting and reviewing a scientific paper. The system has a modular architecture, allowing it to handle specific tasks, such as generating an idea, or carrying out end-to-end scientific analysis using Cmbagent as a deep-research backend. In this work, we describe in detail Denario and its modules, and illustrate its capabilities by presenting multiple AI-generated papers generated by it in many different scientific disciplines such as astrophysics, biology, biophysics, biomedical informatics, chemistry, material science, mathematical physics, medicine, neuroscience and planetary science. Denario also excels at combining ideas from different disciplines, and we illustrate this by showing a paper that applies methods from quantum physics and machine learning to astrophysical data. We report the evaluations performed on these papers by domain experts, who provided both numerical scores and review-like feedback. We then highlight the strengths, weaknesses, and limitations of the current system. Finally, we discuss the ethical implications of AI-driven research and reflect on how such technology relates to the philosophy of science. We publicly release the code at https://github.com/AstroPilot-AI/Denario. A Denario demo can also be run directly on the web at https://huggingface.co/spaces/astropilot-ai/Denario, and the full app will be deployed on the cloud.

cs.AI↗

arXiv2025

Common Task Framework For a Critical Evaluation of Scientific Machine Learning Algorithms

Machine learning (ML) is transforming modeling and control in the physical, engineering, and biological sciences. However, rapid development has outpaced the creation of standardized, objective benchmarks - leading to weak baselines, reporting bias, and inconsistent evaluations across methods. This undermines reproducibility, misguides resource allocation, and obscures scientific progress. To address this, we propose a Common Task Framework (CTF) for scientific machine learning. The CTF features a curated set of datasets and task-specific metrics spanning forecasting, state reconstruction, and generalization under realistic constraints, including noise and limited data. Inspired by the success of CTFs in fields like natural language processing and computer vision, our framework provides a structured, rigorous foundation for head-to-head evaluation of diverse algorithms. As a first step, we benchmark methods on two canonical nonlinear systems: Kuramoto-Sivashinsky and Lorenz. These results illustrate the utility of the CTF in revealing method strengths, limitations, and suitability for specific classes of problems and diverse objectives. Next, we are launching a competition around a global real world sea surface temperature dataset with a true holdout dataset to foster community engagement. Our long-term vision is to replace ad hoc comparisons with standardized evaluations on hidden test sets that raise the bar for rigor and reproducibility in scientific ML.

cs.CE↗