arXiv subjects

Miljko V. Satarić

Publications and source records attributed to Miljko V. Satarić.

3 recordsLinked to original sources

arXiv2012

Nonlinear DNA dynamics: nonlinearity versus dispersion

In the present paper we study the impact of dispersion and nonlinearity on DNA dynamics. We rely on the helicoidal Peyrard-Bishop model and use the fact that nonlinear DNA dynamics represents an interplay between nonlinearity and dispersion. We state that a dispersion coefficient and a coefficient of nonlinearity, existing in nonlinear Schrödinger equation, are mutually dependent and show how function and can be obtained. Also, we show how all this can be used to find a possible interval for the parameter describing helicoidal structure of DNA.

physics.bio-ph↗

arXiv2012

Nonlinear dynamics of microtubules - A new model

In the present paper we describe a model of nonlinear dynamics of microtubules (MT) assuming a single longitudinal degree of freedom per tubulin dimer. This is a longitudinal displacement of a dimer at a certain position with respect to the neighbouring one. A nonlinear partial differential equation, describing dimer`s dynamics within MT, is solved both analytically and numerically. It is shown that such nonlinear model can lead to existence of kink solitons moving along the MTs. Internal electrical field strength is calculated using two procedures and a perfect agreement between the results is demonstrated. This enabled estimation of total energy, kink velocity and kink width. To simplify the calculation of the total energy we proved a useful theorem.

physics.bio-ph↗

arXiv2012

Modified extended tanh-function method and nonlinear dynamics of microtubules

We here present a model of nonlinear dynamics of microtubules (MT) in the context of modified extended tanh-function (METHF) method. We rely on the ferroelectric model of MTs published earlier by Satarić et al [1] where the motion of MT subunits is reduced to a single longitudinal degree of freedom per dimer. It is shown that such nonlinear model can lead to existence of kink solitons moving along the MTs. An analytical solution of the basic equation, describing MT dynamics, was compared with the numerical one and a perfect agreement was demonstrated. It is now clearer how the values of the basic parameters of the model, proportional to viscosity and internal electric field, impact MT dynamics. Finally, we offer a possible scenario of how living cells utilize these kinks as signaling tools for regulation of cellular traffic as well as MT depolymerisation.

physics.bio-ph↗