arXiv subjects

Mingyang Li

Publications and source records attributed to Mingyang Li.

At least 73 records · Page 4Linked to original sources

arXiv2025

What External Knowledge is Preferred by LLMs? Characterizing and Exploring Chain of Evidence in Imperfect Context for Multi-Hop QA

Incorporating external knowledge has emerged as a promising way to mitigate outdated knowledge and hallucinations in LLM. However, external knowledge is often imperfect, encompassing substantial extraneous or even inaccurate content, which interferes with the LLM's utilization of useful knowledge in the context. This paper seeks to characterize the features of preferred external knowledge and perform empirical studies in imperfect contexts. Inspired by the chain of evidence (CoE), we characterize that the knowledge preferred by LLMs should maintain both relevance to the question and mutual support among the textual pieces. Accordingly, we propose a CoE discrimination approach and conduct a comparative analysis between CoE and Non-CoE samples across significance, deceptiveness, and robustness, revealing the LLM's preference for external knowledge that aligns with CoE features. Furthermore, we selected three representative tasks (RAG-based multi-hop QA, external knowledge poisoning and poisoning defense), along with corresponding SOTA or prevalent baselines. By integrating CoE features, the variants achieved significant improvements over the original baselines.

cs.CL↗

arXiv2025

MPRM: A Markov Path-based Rule Miner for Efficient and Interpretable Knowledge Graph Reasoning

Rule mining in knowledge graphs enables interpretable link prediction. However, deep learning-based rule mining methods face significant memory and time challenges for large-scale knowledge graphs, whereas traditional approaches, limited by rigid confidence metrics, incur high computational costs despite sampling techniques. To address these challenges, we propose MPRM, a novel rule mining method that models rule-based inference as a Markov chain and uses an efficient confidence metric derived from aggregated path probabilities, significantly lowering computational demands. Experiments on multiple datasets show that MPRM efficiently mines knowledge graphs with over a million facts, sampling less than 1% of facts on a single CPU in 22 seconds, while preserving interpretability and boosting inference accuracy by up to 11% over baselines.

cs.AI↗

arXiv2025

Exploring Semantic Feature Discrimination for Perceptual Image Super-Resolution and Opinion-Unaware No-Reference Image Quality Assessment

Generative Adversarial Networks (GANs) have been widely applied to image super-resolution (SR) to enhance the perceptual quality. However, most existing GAN-based SR methods typically perform coarse-grained discrimination directly on images and ignore the semantic information of images, making it challenging for the super resolution networks (SRN) to learn fine-grained and semantic-related texture details. To alleviate this issue, we propose a semantic feature discrimination method, SFD, for perceptual SR. Specifically, we first design a feature discriminator (Feat-D), to discriminate the pixel-wise middle semantic features from CLIP, aligning the feature distributions of SR images with that of high-quality images. Additionally, we propose a text-guided discrimination method (TG-D) by introducing learnable prompt pairs (LPP) in an adversarial manner to perform discrimination on the more abstract output feature of CLIP, further enhancing the discriminative ability of our method. With both Feat-D and TG-D, our SFD can effectively distinguish between the semantic feature distributions of low-quality and high-quality images, encouraging SRN to generate more realistic and semantic-relevant textures. Furthermore, based on the trained Feat-D and LPP, we propose a novel opinion-unaware no-reference image quality assessment (OU NR-IQA) method, SFD-IQA, greatly improving OU NR-IQA performance without any additional targeted training. Extensive experiments on classical SISR, real-world SISR, and OU NR-IQA tasks demonstrate the effectiveness of our proposed methods.

cs.CV↗

arXiv2025

A Generalist Cross-Domain Molecular Learning Framework for Structure-Based Drug Discovery

Structure-based drug discovery (SBDD) is a systematic scientific process that develops new drugs by leveraging the detailed physical structure of the target protein. Recent advancements in pre-trained models for biomolecules have demonstrated remarkable success across various biochemical applications, including drug discovery and protein engineering. However, in most approaches, the pre-trained models primarily focus on the characteristics of either small molecules or proteins, without delving into their binding interactions which are essential cross-domain relationships pivotal to SBDD. To fill this gap, we propose a general-purpose foundation model named BIT (an abbreviation for Biomolecular Interaction Transformer), which is capable of encoding a range of biochemical entities, including small molecules, proteins, and protein-ligand complexes, as well as various data formats, encompassing both 2D and 3D structures. Specifically, we introduce Mixture-of-Domain-Experts (MoDE) to handle the biomolecules from diverse biochemical domains and Mixture-of-Structure-Experts (MoSE) to capture positional dependencies in the molecular structures. The proposed mixture-of-experts approach enables BIT to achieve both deep fusion and domain-specific encoding, effectively capturing fine-grained molecular interactions within protein-ligand complexes. Then, we perform cross-domain pre-training on the shared Transformer backbone via several unified self-supervised denoising tasks. Experimental results on various benchmarks demonstrate that BIT achieves exceptional performance in downstream tasks, including binding affinity prediction, structure-based virtual screening, and molecular property prediction.

cs.LG↗

arXiv2025

Mimicking the Familiar: Dynamic Command Generation for Information Theft Attacks in LLM Tool-Learning System

Information theft attacks pose a significant risk to Large Language Model (LLM) tool-learning systems. Adversaries can inject malicious commands through compromised tools, manipulating LLMs to send sensitive information to these tools, which leads to potential privacy breaches. However, existing attack approaches are black-box oriented and rely on static commands that cannot adapt flexibly to the changes in user queries and the invocation chain of tools. It makes malicious commands more likely to be detected by LLM and leads to attack failure. In this paper, we propose AutoCMD, a dynamic attack comment generation approach for information theft attacks in LLM tool-learning systems. Inspired by the concept of mimicking the familiar, AutoCMD is capable of inferring the information utilized by upstream tools in the toolchain through learning on open-source systems and reinforcement with target system examples, thereby generating more targeted commands for information theft. The evaluation results show that AutoCMD outperforms the baselines with +13.2% $ASR_{Theft}$, and can be generalized to new tool-learning systems to expose their information leakage risks. We also design four defense methods to effectively protect tool-learning systems from the attack.

cs.AI↗

arXiv2025

From Allies to Adversaries: Manipulating LLM Tool-Calling through Adversarial Injection

Tool-calling has changed Large Language Model (LLM) applications by integrating external tools, significantly enhancing their functionality across diverse tasks. However, this integration also introduces new security vulnerabilities, particularly in the tool scheduling mechanisms of LLM, which have not been extensively studied. To fill this gap, we present ToolCommander, a novel framework designed to exploit vulnerabilities in LLM tool-calling systems through adversarial tool injection. Our framework employs a well-designed two-stage attack strategy. Firstly, it injects malicious tools to collect user queries, then dynamically updates the injected tools based on the stolen information to enhance subsequent attacks. These stages enable ToolCommander to execute privacy theft, launch denial-of-service attacks, and even manipulate business competition by triggering unscheduled tool-calling. Notably, the ASR reaches 91.67% for privacy theft and hits 100% for denial-of-service and unscheduled tool calling in certain cases. Our work demonstrates that these vulnerabilities can lead to severe consequences beyond simple misuse of tool-calling systems, underscoring the urgent need for robust defensive strategies to secure LLM Tool-calling systems.

cs.CR↗

arXiv2025

Unpaired Translation of Point Clouds for Modeling Detector Response

Modeling detector response is a key challenge in time projection chambers. We cast this problem as an unpaired point cloud translation task, between data collected from simulations and from experimental runs. Effective translation can assist with both noise rejection and the construction of high-fidelity simulators. Building on recent work in diffusion probabilistic models, we present a novel framework for performing this mapping. We demonstrate the success of our approach in both synthetic domains and in data sourced from the Active-Target Time Projection Chamber.

cs.CV↗

arXiv2025

Algebraic skin effect in two-dimensional non-Hermitian metamaterials

Metamaterials have unlocked unprecedented control over light by leveraging novel mechanisms to expand their functionality. Non-Hermitian physics further enhances the tunability of non-Hermitian metamaterials (NHMs) through phenomena such as the non-Hermitian skin effect (NHSE), enabling applications like directional amplification. The higher-dimensional NHSE manifests unique effects, including the algebraic skin effect (ASE), which features power-law decay instead of exponential localization, allowing for quasi-long-range interactions. In this work, we establish apparent criteria for achieving ASE in two-dimensional reciprocal NHMs with anisotropic and complex dielectric tensors. By numerically and theoretically demonstrating ASE through mismatched optical axes and geometric structures, we reveal that ASE is governed by a generalized Fermi surface whose dimensionality exceeds that of the Fermi surface. We further propose and validate a realistic photonic crystal design for ASE, which is experimentally accessible. Our recipe for ASE provides a versatile pathway for broader generalizations, including three-dimensional structures, synthetic dimensions, and other classical wave systems, paving the way for advancements in non-Hermitian photonics.

physics.optics↗

arXiv2024

ProtCLIP: Function-Informed Protein Multi-Modal Learning

Multi-modality pre-training paradigm that aligns protein sequences and biological descriptions has learned general protein representations and achieved promising performance in various downstream applications. However, these works were still unable to replicate the extraordinary success of language-supervised visual foundation models due to the ineffective usage of aligned protein-text paired data and the lack of an effective function-informed pre-training paradigm. To address these issues, this paper curates a large-scale protein-text paired dataset called ProtAnno with a property-driven sampling strategy, and introduces a novel function-informed protein pre-training paradigm. Specifically, the sampling strategy determines selecting probability based on the sample confidence and property coverage, balancing the data quality and data quantity in face of large-scale noisy data. Furthermore, motivated by significance of the protein specific functional mechanism, the proposed paradigm explicitly model protein static and dynamic functional segments by two segment-wise pre-training objectives, injecting fine-grained information in a function-informed manner. Leveraging all these innovations, we develop ProtCLIP, a multi-modality foundation model that comprehensively represents function-aware protein embeddings. On 22 different protein benchmarks within 5 types, including protein functionality classification, mutation effect prediction, cross-modal transformation, semantic similarity inference and protein-protein interaction prediction, our ProtCLIP consistently achieves SOTA performance, with remarkable improvements of 75% on average in five cross-modal transformation benchmarks, 59.9% in GO-CC and 39.7% in GO-BP protein function prediction. The experimental results verify the extraordinary potential of ProtCLIP serving as the protein multi-modality foundation model.

cs.LG↗

arXiv2024

A Roadmap for Software Testing in Open Collaborative Development Environments

Amidst the ever-expanding digital sphere, the evolution of the Internet has not only fostered an atmosphere of information transparency and sharing but has also sparked a revolution in software development practices. The distributed nature of open collaborative development, along with its diverse contributors and rapid iterations, presents new challenges for ensuring software quality. This paper offers a comprehensive review and analysis of recent advancements in software quality assurance within open collaborative development environments. Our examination covers various aspects, including process management, personnel dynamics, and technological advancements, providing valuable insights into effective approaches for maintaining software quality in such collaborative settings. Furthermore, we delve into the challenges and opportunities arising from emerging technologies such as LLMs and the AI model-centric development paradigm. By addressing these topics, our study contributes to a deeper understanding of software quality assurance in open collaborative environments and lays the groundwork for future exploration and innovation.

cs.SE↗

arXiv2024

Cycle Pixel Difference Network for Crisp Edge Detection

Edge detection, as a fundamental task in computer vision, has garnered increasing attention. The advent of deep learning has significantly advanced this field. However, recent deep learning-based methods generally face two significant issues: 1) reliance on large-scale pre-trained weights, and 2) generation of thick edges. We construct a U-shape encoder-decoder model named CPD-Net that successfully addresses these two issues simultaneously. In response to issue 1), we propose a novel cycle pixel difference convolution (CPDC), which effectively integrates edge prior knowledge with modern convolution operations, consequently successfully eliminating the dependence on large-scale pre-trained weights. As for issue 2), we construct a multi-scale information enhancement module (MSEM) and a dual residual connection-based (DRC) decoder to enhance the edge location ability of the model, thereby generating crisp and clean contour maps. Comprehensive experiments conducted on four standard benchmarks demonstrate that our method achieves competitive performance on the BSDS500 dataset (ODS=0.813 and AC=0.352), NYUD-V2 (ODS=0.760 and AC=0.223), BIPED dataset (ODS=0.898 and AC=0.426), and CID (ODS=0.59). Our approach provides a novel perspective for addressing these challenges in edge detection.

cs.CV↗

arXiv2024

On 4-dimensional Ricci-flat ALE manifolds

In this paper, we prove: 1. There is a one-to-one correspondence between: Hermitian non-Kähler ALE gravitational instantons $(M,h)$, and Bach-flat Kähler orbifolds $(\widehat{M},\widehat{g})$ of complex dimension 2 with exactly one orbifold point $q$, such that the scalar curvature $s_{\widehat{g}}$ satisfies $s_{\widehat{g}}(q)=0$ while being positive elsewhere. 2. There is no Hermitian non-Kähler ALE gravitational instanton $(M,h)$ with structure group contained in $SU(2)$, except for the Eguchi-Hanson metric with reversed orientation. A 4-dimensional Ricci-flat metric being Hermitian non-Kähler is equivalent to being non-trivially conformally Kähler.

math.DG↗

arXiv2024

Through the Curved Cover: Synthesizing Cover Aberrated Scenes with Refractive Field

Recent extended reality headsets and field robots have adopted covers to protect the front-facing cameras from environmental hazards and falls. The surface irregularities on the cover can lead to optical aberrations like blurring and non-parametric distortions. Novel view synthesis methods like NeRF and 3D Gaussian Splatting are ill-equipped to synthesize from sequences with optical aberrations. To address this challenge, we introduce SynthCover to enable novel view synthesis through protective covers for downstream extended reality applications. SynthCover employs a Refractive Field that estimates the cover's geometry, enabling precise analytical calculation of refracted rays. Experiments on synthetic and real-world scenes demonstrate our method's ability to accurately model scenes viewed through protective covers, achieving a significant improvement in rendering quality compared to prior methods. We also show that the model can adjust well to various cover geometries with synthetic sequences captured with covers of different surface curvatures. To motivate further studies on this problem, we provide the benchmarked dataset containing real and synthetic walkable scenes captured with protective cover optical aberrations.

cs.CV↗

arXiv2024

Bridge-IF: Learning Inverse Protein Folding with Markov Bridges

Inverse protein folding is a fundamental task in computational protein design, which aims to design protein sequences that fold into the desired backbone structures. While the development of machine learning algorithms for this task has seen significant success, the prevailing approaches, which predominantly employ a discriminative formulation, frequently encounter the error accumulation issue and often fail to capture the extensive variety of plausible sequences. To fill these gaps, we propose Bridge-IF, a generative diffusion bridge model for inverse folding, which is designed to learn the probabilistic dependency between the distributions of backbone structures and protein sequences. Specifically, we harness an expressive structure encoder to propose a discrete, informative prior derived from structures, and establish a Markov bridge to connect this prior with native sequences. During the inference stage, Bridge-IF progressively refines the prior sequence, culminating in a more plausible design. Moreover, we introduce a reparameterization perspective on Markov bridge models, from which we derive a simplified loss function that facilitates more effective training. We also modulate protein language models (PLMs) with structural conditions to precisely approximate the Markov bridge process, thereby significantly enhancing generation performance while maintaining parameter-efficient training. Extensive experiments on well-established benchmarks demonstrate that Bridge-IF predominantly surpasses existing baselines in sequence recovery and excels in the design of plausible proteins with high foldability. The code is available at https://github.com/violet-sto/Bridge-IF.

cs.LG↗

arXiv2024

CodePurify: Defend Backdoor Attacks on Neural Code Models via Entropy-based Purification

Neural code models have found widespread success in tasks pertaining to code intelligence, yet they are vulnerable to backdoor attacks, where an adversary can manipulate the victim model's behavior by inserting triggers into the source code. Recent studies indicate that advanced backdoor attacks can achieve nearly 100% attack success rates on many software engineering tasks. However, effective defense techniques against such attacks remain insufficiently explored. In this study, we propose CodePurify, a novel defense against backdoor attacks on code models through entropy-based purification. Entropy-based purification involves the process of precisely detecting and eliminating the possible triggers in the source code while preserving its semantic information. Within this process, CodePurify first develops a confidence-driven entropy-based measurement to determine whether a code snippet is poisoned and, if so, locates the triggers. Subsequently, it purifies the code by substituting the triggers with benign tokens using a masked language model. We extensively evaluate CodePurify against four advanced backdoor attacks across three representative tasks and two popular code models. The results show that CodePurify significantly outperforms four commonly used defense baselines, improving average defense performance by at least 40%, 40%, and 12% across the three tasks, respectively. These findings highlight the potential of CodePurify to serve as a robust defense against backdoor attacks on neural code models.

cs.CR↗

arXiv2024

Classification results for conformally Kähler gravitational instantons

We investigate the asymptotic geometry of Hermitian non-Kähler Ricci-flat metrics with finite $\int|Rm|^2$ at infinity. Specifically, we prove: 1. Any such metric is asymptotic to an ALE, ALF-A, AF, skewed special Kasner, ALH* model at infinity. 2. Any Hermitian non-Kähler gravitational instanton with non-Euclidean volume growth is one of the following: the Kerr family, the Chen-Teo family, the Taub-bolt space, the reversed Taub-NUT space. This particularly confirms a conjecture by Aksteiner-Andersson. It includes the well-known Kerr family from general relativity. 3. All Hermitian non-Kähler gravitational instantons can be compactified to log del Pezzo surfaces. This explains a curious relation to compact Hermitian non-Kähler Einstein 4-manifolds. For a 4-dimensional Ricci-flat metric, being Hermitian non-Kähler is equivalent to being non-trivially conformally Kähler.

math.DG↗

arXiv2024

On conical asymptotically flat manifolds

We prove a conjecture of Petrunin and Tuschmann on the non-existence of asymptotically flat 4-manifolds asymptotic to the half plane. We also survey recent progress and questions concerning gravitational instantons, which serve as our motivation for studying this question.

math.DG↗

arXiv2024

Repairing Catastrophic-Neglect in Text-to-Image Diffusion Models via Attention-Guided Feature Enhancement

Text-to-Image Diffusion Models (T2I DMs) have garnered significant attention for their ability to generate high-quality images from textual descriptions. However, these models often produce images that do not fully align with the input prompts, resulting in semantic inconsistencies. The most prominent issue among these semantic inconsistencies is catastrophic-neglect, where the images generated by T2I DMs miss key objects mentioned in the prompt. We first conduct an empirical study on this issue, exploring the prevalence of catastrophic-neglect, potential mitigation strategies with feature enhancement, and the insights gained. Guided by the empirical findings, we propose an automated repair approach named Patcher to address catastrophic-neglect in T2I DMs. Specifically, Patcher first determines whether there are any neglected objects in the prompt, and then applies attention-guided feature enhancement to these neglected objects, resulting in a repaired prompt. Experimental results on three versions of Stable Diffusion demonstrate that Patcher effectively repairs the issue of catastrophic-neglect, achieving 10.1%-16.3% higher Correct Rate in image generation compared to baselines.

cs.CV↗