arXiv subjects

Mingyu Lu

Publications and source records attributed to Mingyu Lu.

14 recordsLinked to original sources

arXiv2026

HealthAgentBench: A Unified Benchmark Suite of Realistic Agentic Healthcare Environments for Challenging Frontier AI Agents

As AI agents become increasingly capable of complex, long-horizon reasoning, rigorous and holistic evaluation is essential for measuring progress toward real-world healthcare applications. We introduce HealthAgentBench, a suite of 54 agentic healthcare tasks across 7 categories each with its unique environment. The benchmark suite spans diverse workflows throughout the patient journey and a broad range of modalities. Each task is designed to replicate an end-to-end clinical workflow: given minimal instructions, an agent must explore raw healthcare data, operate within a complex environment, and execute multi-step solutions that go beyond naive prompting. A final task success rate is reported to provide a single, interpretable metric for HealthAgentBench overall performance for each agent. Evaluating frontier agents on HealthAgentBench, we find that overall task success rate remains low, underscoring the difficulty of the suite. The strongest and the most cost effective agent, Codex GPT-5.5, achieves only approximately 42% success rate. Beyond aggregate performance, HealthAgentBench reveals nuanced strengths and weaknesses across task categories. Frontier agents show promise in automatically developing research modeling pipelines over EHR data, but medical imaging remains especially challenging, particularly for Claude Code models, while Codex GPT-5.5 shows emerging capability. Tasks that combine large search spaces with compositional reasoning requirements remain difficult for all current agents. Together, these results suggest that HealthAgentBench provides a challenging and realistic benchmark with substantial room for future progress. We release our benchmark at https://github.com/microsoft/HealthAgentBench.

cs.AI↗

arXiv2026

Agents that Matter: Optimizing Multi-Agent LLMs via Removal-Based Attribution

As multi-agent systems (MAS) become increasingly complex, identifying the contributions of individual agents is critical for system optimization. However, existing approaches lack a rigorous, unified framework for credit assignment. In this work, we formalize agent attribution as a cooperative game, parameterized by the coalition distribution, removal protocol, and target metric. Using this framework, we show that Leave-One-Out (LOO) identifies bottleneck agents as effectively as combinatorial methods, but at a fraction of the computational cost. We also demonstrate that removal protocols induce distinct games: Agent ablation isolates structural bottlenecks, whereas introspective LLM judges fail to faithfully approximate this behavior. Furthermore, to evaluate the utility of specific agent backbones, we introduce attribution via model replacement. By substituting underlying models of low-contribution agents, we improve task performance by up to 17% while reducing cost by up to 35% across three benchmarks. Finally, we apply our framework to audit a medical MAS, revealing that agent contributions to diagnostic accuracy and ethical behavior are often decoupled. By intervening on counterproductive roles, we observe an increase in ethics alignment while maintaining diagnostic accuracy. Overall, this work provides a principled approach for cost-effective MAS attribution and intervention.

cs.MA↗

arXiv2026

SurrogateSHAP: Training-Free Contributor Attribution for Text-to-Image (T2I) Models

As Text-to-Image (T2I) diffusion models are increasingly used in real-world creative workflows, a principled framework for valuing contributors who provide a collection of data is essential for fair compensation and sustainable data marketplaces. While the Shapley value offers a theoretically grounded approach to attribution, it faces a dual computational bottleneck: (i) the prohibitive cost of exhaustive model retraining for each sampled subset of players (i.e., data contributors) and (ii) the combinatorial number of subsets needed to estimate marginal contributions due to contributor interactions. To this end, we propose SurrogateSHAP, a retraining-free framework that approximates the expensive retraining game through inference from a pretrained model. To further improve efficiency, we employ a gradient-boosted tree to approximate the utility function and derive Shapley values analytically from the tree-based model. We evaluate SurrogateSHAP across three diverse attribution tasks: (i) image quality for DDPM-CFG on CIFAR-20, (ii) aesthetics for Stable Diffusion on Post-Impressionist artworks, and (iii) product diversity for FLUX.1 on Fashion-Product data. Across settings, SurrogateSHAP outperforms prior methods while substantially reducing computational overhead, consistently identifying influential contributors across multiple utility metrics. Finally, we demonstrate that SurrogateSHAP effectively localizes data sources responsible for spurious correlations in clinical images, providing a scalable path toward auditing safety-critical generative models.

cs.LG↗

arXiv2025

MedBLINK: Probing Basic Perception in Multimodal Language Models for Medicine

Multimodal language models (MLMs) show promise for clinical decision support and diagnostic reasoning, raising the prospect of end-to-end automated medical image interpretation. However, clinicians are highly selective in adopting AI tools; a model that makes errors on seemingly simple perception tasks such as determining image orientation or identifying whether a CT scan is contrast-enhance are unlikely to be adopted for clinical tasks. We introduce Medblink, a benchmark designed to probe these models for such perceptual abilities. Medblink spans eight clinically meaningful tasks across multiple imaging modalities and anatomical regions, totaling 1,429 multiple-choice questions over 1,605 images. We evaluate 19 state-of-the-art MLMs, including general purpose (GPT4o, Claude 3.5 Sonnet) and domain specific (Med Flamingo, LLaVA Med, RadFM) models. While human annotators achieve 96.4% accuracy, the best-performing model reaches only 65%. These results show that current MLMs frequently fail at routine perceptual checks, suggesting the need to strengthen their visual grounding to support clinical adoption. Data is available on our project page.

cs.AI↗

arXiv2025

CellCLIP -- Learning Perturbation Effects in Cell Painting via Text-Guided Contrastive Learning

High-content screening (HCS) assays based on high-throughput microscopy techniques such as Cell Painting have enabled the interrogation of cells' morphological responses to perturbations at an unprecedented scale. The collection of such data promises to facilitate a better understanding of the relationships between different perturbations and their effects on cellular state. Towards achieving this goal, recent advances in cross-modal contrastive learning could, in theory, be leveraged to learn a unified latent space that aligns perturbations with their corresponding morphological effects. However, the application of such methods to HCS data is not straightforward due to substantial differences in the semantics of Cell Painting images compared to natural images, and the difficulty of representing different classes of perturbations (e.g., small molecule vs CRISPR gene knockout) in a single latent space. In response to these challenges, here we introduce CellCLIP, a cross-modal contrastive learning framework for HCS data. CellCLIP leverages pre-trained image encoders coupled with a novel channel encoding scheme to better capture relationships between different microscopy channels in image embeddings, along with natural language encoders for representing perturbations. Our framework outperforms current open-source models, demonstrating the best performance in both cross-modal retrieval and biologically meaningful downstream tasks while also achieving significant reductions in computation time.

cs.LG↗

arXiv2025

UFM: Unified Feature Matching Pre-training with Multi-Modal Image Assistants

Image feature matching, a foundational task in computer vision, remains challenging for multimodal image applications, often necessitating intricate training on specific datasets. In this paper, we introduce a Unified Feature Matching pre-trained model (UFM) designed to address feature matching challenges across a wide spectrum of modal images. We present Multimodal Image Assistant (MIA) transformers, finely tunable structures adept at handling diverse feature matching problems. UFM exhibits versatility in addressing both feature matching tasks within the same modal and those across different modals. Additionally, we propose a data augmentation algorithm and a staged pre-training strategy to effectively tackle challenges arising from sparse data in specific modals and imbalanced modal datasets. Experimental results demonstrate that UFM excels in generalization and performance across various feature matching tasks. The code will be released at:https://github.com/LiaoYun0x0/UFM.

cs.CV↗

arXiv2025

Medical Hallucinations in Foundation Models and Their Impact on Healthcare

Hallucinations in foundation models arise from autoregressive training objectives that prioritize token-likelihood optimization over epistemic accuracy, fostering overconfidence and poorly calibrated uncertainty. We define medical hallucination as any model-generated output that is factually incorrect, logically inconsistent, or unsupported by authoritative clinical evidence in ways that could alter clinical decisions. We evaluated 11 foundation models (7 general-purpose, 4 medical-specialized) across seven medical hallucination tasks spanning medical reasoning and biomedical information retrieval. General-purpose models achieved significantly higher proportions of hallucination-free responses than medical-specialized models (median: 76.6% vs 51.3%, difference = 25.2%, 95% CI: 18.7-31.3%, Mann-Whitney U = 27.0, p = 0.012, rank-biserial r = -0.64). Top-performing models such as Gemini-2.5 Pro exceeded 97% accuracy when augmented with chain-of-thought prompting (base: 87.6%), while medical-specialized models like MedGemma ranged from 28.6-61.9% despite explicit training on medical corpora. Chain-of-thought reasoning significantly reduced hallucinations in 86.4% of tested comparisons after FDR correction (q < 0.05), demonstrating that explicit reasoning traces enable self-verification and error detection. Physician audits confirmed that 64-72% of residual hallucinations stemmed from causal or temporal reasoning failures rather than knowledge gaps. A global survey of clinicians (n = 70) validated real-world impact: 91.8% had encountered medical hallucinations, and 84.7% considered them capable of causing patient harm. The underperformance of medical-specialized models despite domain training indicates that safety emerges from sophisticated reasoning capabilities and broad knowledge integration developed during large-scale pre-training, not from narrow optimization.

cs.CL↗

arXiv2024

Swin-BERT: A Feature Fusion System designed for Speech-based Alzheimer's Dementia Detection

Speech is usually used for constructing an automatic Alzheimer's dementia (AD) detection system, as the acoustic and linguistic abilities show a decline in people living with AD at the early stages. However, speech includes not only AD-related local and global information but also other information unrelated to cognitive status, such as age and gender. In this paper, we propose a speech-based system named Swin-BERT for automatic dementia detection. For the acoustic part, the shifted windows multi-head attention that proposed to extract local and global information from images, is used for designing our acoustic-based system. To decouple the effect of age and gender on acoustic feature extraction, they are used as an extra input of the designed acoustic system. For the linguistic part, the rhythm-related information, which varies significantly between people living with and without AD, is removed while transcribing the audio recordings into transcripts. To compensate for the removed rhythm-related information, the character-level transcripts are proposed to be used as the extra input of a word-level BERT-style system. Finally, the Swin-BERT combines the acoustic features learned from our proposed acoustic-based system with our linguistic-based system. The experiments are based on the two datasets provided by the international dementia detection challenges: the ADReSS and ADReSSo. The results show that both the proposed acoustic and linguistic systems can be better or comparable with previous research on the two datasets. Superior results are achieved by the proposed Swin-BERT system on the ADReSS and ADReSSo datasets, which are 85.58\% F-score and 87.32\% F-score respectively.

eess.AS↗

arXiv2024

An Efficient Framework for Crediting Data Contributors of Diffusion Models

As diffusion models are deployed in real-world settings, and their performance is driven by training data, appraising the contribution of data contributors is crucial to creating incentives for sharing quality data and to implementing policies for data compensation. Depending on the use case, model performance corresponds to various global properties of the distribution learned by a diffusion model (e.g., overall aesthetic quality). Hence, here we address the problem of attributing global properties of diffusion models to data contributors. The Shapley value provides a principled approach to valuation by uniquely satisfying game-theoretic axioms of fairness. However, estimating Shapley values for diffusion models is computationally impractical because it requires retraining on many training data subsets corresponding to different contributors and rerunning inference. We introduce a method to efficiently retrain and rerun inference for Shapley value estimation, by leveraging model pruning and fine-tuning. We evaluate the utility of our method with three use cases: (i) image quality for a DDPM trained on a CIFAR dataset, (ii) demographic diversity for an LDM trained on CelebA-HQ, and (iii) aesthetic quality for a Stable Diffusion model LoRA-finetuned on Post-Impressionist artworks. Our results empirically demonstrate that our framework can identify important data contributors across models' global properties, outperforming existing attribution methods for diffusion models.

cs.LG↗

arXiv2023

TKwinFormer: Top k Window Attention in Vision Transformers for Feature Matching

Local feature matching remains a challenging task, primarily due to difficulties in matching sparse keypoints and low-texture regions. The key to solving this problem lies in effectively and accurately integrating global and local information. To achieve this goal, we introduce an innovative local feature matching method called TKwinFormer. Our approach employs a multi-stage matching strategy to optimize the efficiency of information interaction. Furthermore, we propose a novel attention mechanism called Top K Window Attention, which facilitates global information interaction through window tokens prior to patch-level matching, resulting in improved matching accuracy. Additionally, we design an attention block to enhance attention between channels. Experimental results demonstrate that TKwinFormer outperforms state-of-the-art methods on various benchmarks. Code is available at: https://github.com/LiaoYun0x0/TKwinFormer.

eess.IV↗

arXiv2023

Learning to Maximize Mutual Information for Dynamic Feature Selection

Feature selection helps reduce data acquisition costs in ML, but the standard approach is to train models with static feature subsets. Here, we consider the dynamic feature selection (DFS) problem where a model sequentially queries features based on the presently available information. DFS is often addressed with reinforcement learning, but we explore a simpler approach of greedily selecting features based on their conditional mutual information. This method is theoretically appealing but requires oracle access to the data distribution, so we develop a learning approach based on amortized optimization. The proposed method is shown to recover the greedy policy when trained to optimality, and it outperforms numerous existing feature selection methods in our experiments, thus validating it as a simple but powerful approach for this problem.

cs.LG↗

arXiv2022

A Deep Bayesian Bandits Approach for Anticancer Therapy: Exploration via Functional Prior

Learning personalized cancer treatment with machine learning holds great promise to improve cancer patients' chance of survival. Despite recent advances in machine learning and precision oncology, this approach remains challenging as collecting data in preclinical/clinical studies for modeling multiple treatment efficacies is often an expensive, time-consuming process. Moreover, the randomization in treatment allocation proves to be suboptimal since some participants/samples are not receiving the most appropriate treatments during the trial. To address this challenge, we formulate drug screening study as a "contextual bandit" problem, in which an algorithm selects anticancer therapeutics based on contextual information about cancer cell lines while adapting its treatment strategy to maximize treatment response in an "online" fashion. We propose using a novel deep Bayesian bandits framework that uses functional prior to approximate posterior for drug response prediction based on multi-modal information consisting of genomic features and drug structure. We empirically evaluate our method on three large-scale in vitro pharmacogenomic datasets and show that our approach outperforms several benchmarks in identifying optimal treatment for a given cell line.

cs.LG↗

arXiv2021

On the Spurious Interior Resonance Modes of Time Domain Integral Equations for Analyzing Acoustic Scattering from Penetrable Objects

The interior resonance problem of time domain integral equations (TDIEs) formulated to analyze acoustic field interactions on penetrable objects is investigated. Two types of TDIEs are considered: The first equation, which is termed the time domain potential integral equation (TDPIE) (in unknowns velocity potential and its normal derivative), suffers from the interior resonance problem, i.e., its solution is replete with spurious modes that are excited at the resonance frequencies of the acoustic cavity in the shape of the scatterer. Numerical experiments demonstrate that, unlike the frequency-domain integral equations, the amplitude of these modes in the time domain could be suppressed to a level that does not significantly affect the solution. The second equation is obtained by linearly combining TDPIE with its normal derivative. Weights of the combination are carefully selected to enable the numerical computation of the singular integrals. The solution of this equation, which is termed the time domain combined potential integral equation (TDCPIE), does not involve any spurious interior resonance modes.

physics.comp-ph↗

arXiv2020

G-Net: A Deep Learning Approach to G-computation for Counterfactual Outcome Prediction Under Dynamic Treatment Regimes

Counterfactual prediction is a fundamental task in decision-making. G-computation is a method for estimating expected counterfactual outcomes under dynamic time-varying treatment strategies. Existing G-computation implementations have mostly employed classical regression models with limited capacity to capture complex temporal and nonlinear dependence structures. This paper introduces G-Net, a novel sequential deep learning framework for G-computation that can handle complex time series data while imposing minimal modeling assumptions and provide estimates of individual or population-level time varying treatment effects. We evaluate alternative G-Net implementations using realistically complex temporal simulated data obtained from CVSim, a mechanistic model of the cardiovascular system.

cs.LG↗