arXiv subjects

Mingyu Yan

Publications and source records attributed to Mingyu Yan.

At least 37 records · Page 2Linked to original sources

arXiv2024

ADE-HGNN: Accelerating HGNNs through Attention Disparity Exploitation

Heterogeneous Graph Neural Networks (HGNNs) have recently demonstrated great power in handling heterogeneous graph data, rendering them widely applied in many critical real-world domains. Most HGNN models leverage attention mechanisms to significantly improvemodel accuracy, albeit at the cost of increased computational complexity and memory bandwidth requirements. Fortunately, the attention disparity from source vertices towards a common target vertex unveils an opportunity to boost the model execution performance by pruning unimportant source vertices during neighbor aggregation. In this study, we commence with a quantitative analysis of the attention disparity in HGNN models, where the importance of different source vertices varies for the same target vertex. To fully exploit this finding for inference acceleration, we propose a runtime pruning method based on min-heap and map it to a dedicated hardware pruner to discard unimportant vertices. Given that the pruning overhead itself is non-negligible and cannot be amortized by conventional staged execution paradigm, an operation-fusion execution fow of HGNNs is introduced to overlap the pruning overhead while harnessing inter-stage parallelism. Finally, we present the design of a novel HGNN accelerator, ADE-HGNN, tailored to support the proposed execution framework. Our experimental results demonstrate that ADE-HGNN achieves an average performance improvement of 28.21x over the NVIDIA GPU T4 platform and 7.98x over the advanced GPU A100, with the inference accuracy loss kept within a negligible range of 0.11%~1.47%. Furthermore, ADE-HGNN significantly reduces energy consumption to 1.97% and 5.37% of the two platforms, respectively.

cs.AR↗

arXiv2024

Disttack: Graph Adversarial Attacks Toward Distributed GNN Training

Graph Neural Networks (GNNs) have emerged as potent models for graph learning. Distributing the training process across multiple computing nodes is the most promising solution to address the challenges of ever-growing real-world graphs. However, current adversarial attack methods on GNNs neglect the characteristics and applications of the distributed scenario, leading to suboptimal performance and inefficiency in attacking distributed GNN training. In this study, we introduce Disttack, the first framework of adversarial attacks for distributed GNN training that leverages the characteristics of frequent gradient updates in a distributed system. Specifically, Disttack corrupts distributed GNN training by injecting adversarial attacks into one single computing node. The attacked subgraphs are precisely perturbed to induce an abnormal gradient ascent in backpropagation, disrupting gradient synchronization between computing nodes and thus leading to a significant performance decline of the trained GNN. We evaluate Disttack on four large real-world graphs by attacking five widely adopted GNNs. Compared with the state-of-the-art attack method, experimental results demonstrate that Disttack amplifies the model accuracy degradation by 2.75$\times$ and achieves speedup by 17.33$\times$ on average while maintaining unnoticeability.

cs.LG↗

arXiv2024

HiHGNN: Accelerating HGNNs through Parallelism and Data Reusability Exploitation

Heterogeneous graph neural networks (HGNNs) have emerged as powerful algorithms for processing heterogeneous graphs (HetGs), widely used in many critical fields. To capture both structural and semantic information in HetGs, HGNNs first aggregate the neighboring feature vectors for each vertex in each semantic graph and then fuse the aggregated results across all semantic graphs for each vertex. Unfortunately, existing graph neural network accelerators are ill-suited to accelerate HGNNs. This is because they fail to efficiently tackle the specific execution patterns and exploit the high-degree parallelism as well as data reusability inside and across the processing of semantic graphs in HGNNs. In this work, we first quantitatively characterize a set of representative HGNN models on GPU to disclose the execution bound of each stage, inter-semantic-graph parallelism, and inter-semantic-graph data reusability in HGNNs. Guided by our findings, we propose a high-performance HGNN accelerator, HiHGNN, to alleviate the execution bound and exploit the newfound parallelism and data reusability in HGNNs. Specifically, we first propose a bound-aware stage-fusion methodology that tailors to HGNN acceleration, to fuse and pipeline the execution stages being aware of their execution bounds. Second, we design an independency-aware parallel execution design to exploit the inter-semantic-graph parallelism. Finally, we present a similarity-aware execution scheduling to exploit the inter-semantic-graph data reusability. Compared to the state-of-the-art software framework running on NVIDIA GPU T4 and GPU A100, HiHGNN respectively achieves an average 41.5$\times$ and 8.6$\times$ speedup as well as 106$\times$ and 73$\times$ energy efficiency with quarter the memory bandwidth of GPU A100.

cs.AR↗

arXiv2024

GDR-HGNN: A Heterogeneous Graph Neural Networks Accelerator Frontend with Graph Decoupling and Recoupling

Heterogeneous Graph Neural Networks (HGNNs) have broadened the applicability of graph representation learning to heterogeneous graphs. However, the irregular memory access pattern of HGNNs leads to the buffer thrashing issue in HGNN accelerators. In this work, we identify an opportunity to address buffer thrashing in HGNN acceleration through an analysis of the topology of heterogeneous graphs. To harvest this opportunity, we propose a graph restructuring method and map it into a hardware frontend named GDR-HGNN. GDR-HGNN dynamically restructures the graph on the fly to enhance data locality for HGNN accelerators. Experimental results demonstrate that, with the assistance of GDR-HGNN, a leading HGNN accelerator achieves an average speedup of 14.6 times and 1.78 times compared to the state-of-the-art software framework running on A100 GPU and itself, respectively.

cs.AR↗

arXiv2024

Revisiting Edge Perturbation for Graph Neural Network in Graph Data Augmentation and Attack

Edge perturbation is a basic method to modify graph structures. It can be categorized into two veins based on their effects on the performance of graph neural networks (GNNs), i.e., graph data augmentation and attack. Surprisingly, both veins of edge perturbation methods employ the same operations, yet yield opposite effects on GNNs' accuracy. A distinct boundary between these methods in using edge perturbation has never been clearly defined. Consequently, inappropriate perturbations may lead to undesirable outcomes, necessitating precise adjustments to achieve desired effects. Therefore, questions of ``why edge perturbation has a two-faced effect?'' and ``what makes edge perturbation flexible and effective?'' still remain unanswered. In this paper, we will answer these questions by proposing a unified formulation and establishing a clear boundary between two categories of edge perturbation methods. Specifically, we conduct experiments to elucidate the differences and similarities between these methods and theoretically unify the workflow of these methods by casting it to one optimization problem. Then, we devise Edge Priority Detector (EPD) to generate a novel priority metric, bridging these methods up in the workflow. Experiments show that EPD can make augmentation or attack flexibly and achieve comparable or superior performance to other counterparts with less time overhead.

cs.LG↗

arXiv2023

A Comprehensive Survey on Distributed Training of Graph Neural Networks

Graph neural networks (GNNs) have been demonstrated to be a powerful algorithmic model in broad application fields for their effectiveness in learning over graphs. To scale GNN training up for large-scale and ever-growing graphs, the most promising solution is distributed training which distributes the workload of training across multiple computing nodes. At present, the volume of related research on distributed GNN training is exceptionally vast, accompanied by an extraordinarily rapid pace of publication. Moreover, the approaches reported in these studies exhibit significant divergence. This situation poses a considerable challenge for newcomers, hindering their ability to grasp a comprehensive understanding of the workflows, computational patterns, communication strategies, and optimization techniques employed in distributed GNN training. As a result, there is a pressing need for a survey to provide correct recognition, analysis, and comparisons in this field. In this paper, we provide a comprehensive survey of distributed GNN training by investigating various optimization techniques used in distributed GNN training. First, distributed GNN training is classified into several categories according to their workflows. In addition, their computational patterns and communication patterns, as well as the optimization techniques proposed by recent work are introduced. Second, the software frameworks and hardware platforms of distributed GNN training are also introduced for a deeper understanding. Third, distributed GNN training is compared with distributed training of deep neural networks, emphasizing the uniqueness of distributed GNN training. Finally, interesting issues and opportunities in this field are discussed.

cs.DC↗

arXiv2023

A Survey of Graph Pre-processing Methods: From Algorithmic to Hardware Perspectives

Graph-related applications have experienced significant growth in academia and industry, driven by the powerful representation capabilities of graph. However, efficiently executing these applications faces various challenges, such as load imbalance, random memory access, etc. To address these challenges, researchers have proposed various acceleration systems, including software frameworks and hardware accelerators, all of which incorporate graph pre-processing (GPP). GPP serves as a preparatory step before the formal execution of applications, involving techniques such as sampling, reorder, etc. However, GPP execution often remains overlooked, as the primary focus is directed towards enhancing graph applications themselves. This oversight is concerning, especially considering the explosive growth of real-world graph data, where GPP becomes essential and even dominates system running overhead. Furthermore, GPP methods exhibit significant variations across devices and applications due to high customization. Unfortunately, no comprehensive work systematically summarizes GPP. To address this gap and foster a better understanding of GPP, we present a comprehensive survey dedicated to this area. We propose a double-level taxonomy of GPP, considering both algorithmic and hardware perspectives. Through listing relavent works, we illustrate our taxonomy and conduct a thorough analysis and summary of diverse GPP techniques. Lastly, we discuss challenges in GPP and potential future directions.

cs.AR↗

arXiv2023

Simple and Efficient Heterogeneous Graph Neural Network

Heterogeneous graph neural networks (HGNNs) have powerful capability to embed rich structural and semantic information of a heterogeneous graph into node representations. Existing HGNNs inherit many mechanisms from graph neural networks (GNNs) over homogeneous graphs, especially the attention mechanism and the multi-layer structure. These mechanisms bring excessive complexity, but seldom work studies whether they are really effective on heterogeneous graphs. This paper conducts an in-depth and detailed study of these mechanisms and proposes Simple and Efficient Heterogeneous Graph Neural Network (SeHGNN). To easily capture structural information, SeHGNN pre-computes the neighbor aggregation using a light-weight mean aggregator, which reduces complexity by removing overused neighbor attention and avoiding repeated neighbor aggregation in every training epoch. To better utilize semantic information, SeHGNN adopts the single-layer structure with long metapaths to extend the receptive field, as well as a transformer-based semantic fusion module to fuse features from different metapaths. As a result, SeHGNN exhibits the characteristics of simple network structure, high prediction accuracy, and fast training speed. Extensive experiments on five real-world heterogeneous graphs demonstrate the superiority of SeHGNN over the state-of-the-arts on both accuracy and training speed.

cs.LG↗

arXiv2023

Cloud Behaviour on Tidally Locked Rocky Planets from Global High-resolution Modeling

Determining the behaviour of convection and clouds is one of the biggest challenges in our understanding of exoplanetary climates. Given the lack of in situ observations, one of the most preferable approaches is to use cloud-resolving or cloud-permitting models (CPM). Here we present CPM simulations in a quasi-global domain with high spatial resolution (4$\times$4 km grid) and explicit convection to study the cloud regime of 1 to 1 tidally locked rocky planets orbiting around low-mass stars. We show that the substellar region is covered by deep convective clouds and cloud albedo increases with increasing stellar flux. The CPM produces relatively less cloud liquid water concentration, smaller cloud coverage, lower cloud albedo, and deeper H2O spectral features than previous general circulation model (GCM) simulations employing empirical convection and cloud parameterizations. Furthermore, cloud streets--long bands of low-level clouds oriented nearly parallel to the direction of the mean boundary-layer winds--appear in the CPM and substantially affect energy balance and surface precipitation at a local level.

astro-ph.EP↗

arXiv2022

Cyber-physical interdependent restoration scheduling for active distribution network via ad hoc wireless communication

This paper proposes a post-disaster cyber-physical interdependent restoration scheduling (CPIRS) framework for active distribution networks (ADN) where the simultaneous damages on cyber and physical networks are considered. The ad hoc wireless device-to-device (D2D) communication is leveraged, for the first time, to establish cyber networks instantly after the disaster to support ADN restoration. The repair and operation crew dispatching, the remote-controlled network reconfiguration and the system operation with DERs can be effectively coordinated under the cyber-physical interactions. The uncertain outputs of renewable energy resources (RESs) are represented by budget-constrained polyhedral uncertainty sets. Through implementing linearization techniques on disjunctive expressions, a monolithic mixed-integer linear programming (MILP) based two-stage robust optimization model is formulated and subsequently solved by a customized column-and-constraint generation (C&CG) algorithm. Numerical results on the IEEE 123-node distribution system demonstrate the effectiveness and superiorities of the proposed CPIRS method for ADN.

eess.SY↗

arXiv2022

Towards Joint Electricity and Data Trading: A Scalable Cooperative Game Theoretic Approach

This paper, for the first time, proposes a joint electricity and data trading mechanism based on cooperative game theory. All prosumers first submit the parameters associated with both electricity and data to the market operator. The operator utilizes the public and prosumers' private data to forecast the distributed renewable generators (DRGs) and quantify the improvement driven by prosumers' private data in terms of reduced uncertainty set. Then, the operator maximizes the grand coalition's total payoff considering the uncertain generation of DRGs and imputes the payoff to each prosumer based on their contribution to electricity and data sharing. The mathematical formulation of the grand coalition is developed and converted into a second order cone programming problem by using an affinepolicy based robust approach. The stability of such a grand coalition is mathematically proved, i.e., all prosumers are willing to cooperate. Furthermore, to address the scalability challenge of existing payoff imputation methods in the cooperative game, a two stage optimization based approach is proposed, which is converted into a mixed integer second order cone programming and solved by the Benders decomposition. Case studies illustrate all prosumers are motivated to trade electricity and data under the joint trading framework and the proposed imputation method significantly enhances the scalability.

eess.SY↗

arXiv2022

Cloud Feedback on Earth's Long-term Climate Simulated by a Near-global Cloud-permitting Model

The Sun becomes brighter with time, but Earth's climate is roughly temperate for life during its long-term history; for early Earth, this is known as the Faint Young Sun Problem (FYSP). Besides the carbonate-silicate feedback, recent researches suggest that a long-term cloud feedback may partially solve the FYSP. However, the general circulation models they used cannot resolve convection and clouds explicitly. This study re-investigates the clouds using a near-global cloud-permitting model without cumulus convection parameterization. Our results confirm that a stabilizing shortwave cloud feedback does exist, and its magnitude is $\approx$6 W m$^{-2}$ or 14% of the energy required to offset a 20% fainter Sun than today, or $\approx$10 W m$^{-2}$ or 16% for a 30% fainter Sun. When insolation increases and meanwhile CO$_2$ concentration decreases, low-level clouds increase, acting to stabilize the climate by raising planetary albedo, and vice versa.

physics.ao-ph↗

arXiv2022

Multi-node Acceleration for Large-scale GCNs

Limited by the memory capacity and compute power, singe-node graph convolutional neural network (GCN) accelerators cannot complete the execution of GCNs within a reasonable amount of time, due to the explosive size of graphs nowadays. Thus, large-scale GCNs call for a multi-node acceleration system (MultiAccSys) like TPU-Pod for large-scale neural networks. In this work, we aim to scale up single-node GCN accelerators to accelerate GCNs on large-scale graphs. We first identify the communication pattern and challenges of multi-node acceleration for GCNs on large-scale graphs. We observe that (1) coarse-grained communication patterns exist in the execution of GCNs in MultiAccSys, which introduces massive amount of redundant network transmissions and off-chip memory accesses; (2) overall, the acceleration of GCNs in MultiAccSys is bandwidth-bound and latency-tolerant. Guided by these two observations, we then propose MultiGCN, the first MultiAccSys for large-scale GCNs that trades network latency for network bandwidth. Specifically, by leveraging the network latency tolerance, we first propose a topology-aware multicast mechanism with a one put per multicast message-passing model to reduce transmissions and alleviate network bandwidth requirements. Second, we introduce a scatter-based round execution mechanism which cooperates with the multicast mechanism and reduces redundant off-chip memory accesses. Compared to the baseline MultiAccSys, MultiGCN achieves 4~12x speedup using only 28%~68% energy, while reducing 32% transmissions and 73% off-chip memory accesses on average. It not only achieves 2.5~8x speedup over the state-of-the-art multi-GPU solution, but also scales to large-scale graphs as opposed to single-node GCN accelerators.

cs.AR↗

arXiv2022

Rethinking Efficiency and Redundancy in Training Large-scale Graphs

Large-scale graphs are ubiquitous in real-world scenarios and can be trained by Graph Neural Networks (GNNs) to generate representation for downstream tasks. Given the abundant information and complex topology of a large-scale graph, we argue that redundancy exists in such graphs and will degrade the training efficiency. Unfortunately, the model scalability severely restricts the efficiency of training large-scale graphs via vanilla GNNs. Despite recent advances in sampling-based training methods, sampling-based GNNs generally overlook the redundancy issue. It still takes intolerable time to train these models on large-scale graphs. Thereby, we propose to drop redundancy and improve efficiency of training large-scale graphs with GNNs, by rethinking the inherent characteristics in a graph. In this paper, we pioneer to propose a once-for-all method, termed DropReef, to drop the redundancy in large-scale graphs. Specifically, we first conduct preliminary experiments to explore potential redundancy in large-scale graphs. Next, we present a metric to quantify the neighbor heterophily of all nodes in a graph. Based on both experimental and theoretical analysis, we reveal the redundancy in a large-scale graph, i.e., nodes with high neighbor heterophily and a great number of neighbors. Then, we propose DropReef to detect and drop the redundancy in large-scale graphs once and for all, helping reduce the training time while ensuring no sacrifice in the model accuracy. To demonstrate the effectiveness of DropReef, we apply it to recent state-of-the-art sampling-based GNNs for training large-scale graphs, owing to the high precision of such models. With DropReef leveraged, the training efficiency of models can be greatly promoted. DropReef is highly compatible and is offline performed, benefiting the state-of-the-art sampling-based GNNs in the present and future to a significant extent.

cs.LG↗

arXiv2022

Characterizing and Understanding HGNNs on GPUs

Heterogeneous graph neural networks (HGNNs) deliver powerful capacity in heterogeneous graph representation learning. The execution of HGNNs is usually accelerated by GPUs. Therefore, characterizing and understanding the execution pattern of HGNNs on GPUs is important for both software and hardware optimizations. Unfortunately, there is no detailed characterization effort of HGNN workloads on GPUs. In this paper, we characterize HGNN workloads at inference phase and explore the execution of HGNNs on GPU, to disclose the execution semantic and execution pattern of HGNNs. Given the characterization and exploration, we propose several useful guidelines for both software and hardware optimizations for the efficient execution of HGNNs on GPUs.

cs.AR↗

arXiv2022

GNNSampler: Bridging the Gap between Sampling Algorithms of GNN and Hardware

Sampling is a critical operation in Graph Neural Network (GNN) training that helps reduce the cost. Previous literature has explored improving sampling algorithms via mathematical and statistical methods. However, there is a gap between sampling algorithms and hardware. Without consideration of hardware, algorithm designers merely optimize sampling at the algorithm level, missing the great potential of promoting the efficiency of existing sampling algorithms by leveraging hardware features. In this paper, we pioneer to propose a unified programming model for mainstream sampling algorithms, termed GNNSampler, covering the critical processes of sampling algorithms in various categories. Second, to leverage the hardware feature, we choose the data locality as a case study, and explore the data locality among nodes and their neighbors in a graph to alleviate irregular memory access in sampling. Third, we implement locality-aware optimizations in GNNSampler for various sampling algorithms to optimize the general sampling process. Finally, we emphatically conduct experiments on large graph datasets to analyze the relevance among training time, accuracy, and hardware-level metrics. Extensive experiments show that our method is universal to mainstream sampling algorithms and helps significantly reduce the training time, especially in large-scale graphs.

cs.LG↗

arXiv2022

Survey on Graph Neural Network Acceleration: An Algorithmic Perspective

Graph neural networks (GNNs) have been a hot spot of recent research and are widely utilized in diverse applications. However, with the use of huger data and deeper models, an urgent demand is unsurprisingly made to accelerate GNNs for more efficient execution. In this paper, we provide a comprehensive survey on acceleration methods for GNNs from an algorithmic perspective. We first present a new taxonomy to classify existing acceleration methods into five categories. Based on the classification, we systematically discuss these methods and highlight their correlations. Next, we provide comparisons from aspects of the efficiency and characteristics of these methods. Finally, we suggest some promising prospects for future research.

cs.LG↗

arXiv2022

Characterizing and Understanding Distributed GNN Training on GPUs

Graph neural network (GNN) has been demonstrated to be a powerful model in many domains for its effectiveness in learning over graphs. To scale GNN training for large graphs, a widely adopted approach is distributed training which accelerates training using multiple computing nodes. Maximizing the performance is essential, but the execution of distributed GNN training remains preliminarily understood. In this work, we provide an in-depth analysis of distributed GNN training on GPUs, revealing several significant observations and providing useful guidelines for both software optimization and hardware optimization.

cs.DC↗