arXiv subjects

Minu Varghese

Publications and source records attributed to Minu Varghese.

6 recordsLinked to original sources

arXiv2022

Spatiotemporal patterning of extensile active stresses in microtubule-based active fluids

Active stresses, which are collectively generated by the motion of energy-consuming rod-like constituents, generate chaotic autonomous flows. Controlling active stresses in space and time is an essential prerequisite for controlling the intrinsically chaotic dynamics of extensile active fluids. We design single-headed kinesin molecular motors that exhibit optically enhanced clustering, and thus enable precise and repeatable spatial and temporal control of extensile active stresses. Such motors enable rapid, reversible switching between flowing and quiescent states. In turn, spatio-temporal patterning of the active stress controls the evolution of the ubiquitous bend-instability of extensile active fluids and determines its critical length dependence. Combining optically controlled clusters with conventional kinesin motors enables one-time switching from contractile to extensile active stresses. These results open a path towards real-time control of the autonomous flows generated by active fluids.

cond-mat.soft↗

arXiv2022

Data-driven discovery of active nematic hydrodynamics

Two-dimensional active nematics are often modeled using phenomenological continuum theories that describe the dynamics of the nematic director and fluid velocity through partial differential equations (PDEs). While these models provide a statistically accurate description of the experiments, the identification of the relevant terms in the PDEs and their parameters is usually indirect. Here, we adapt a recently developed method to automatically identify optimal continuum models for active nematics directly from the spatio-temporal director and velocity data, via sparse fitting of the coarse-grained fields onto generic low order PDEs. We test the method extensively on computational models, and then apply it to data from experiments on microtubule-based active nematics. Thereby, we identify the optimal models for microtubule-based active nematics, along with the relevant phenomenological parameters. We find that the dynamics of the orientation field are largely governed by its coupling to the underlying flow, with free-energy gradients playing a negligible role. Furthermore, by fitting the flow equation to experimental data, we estimate a key parameter quantifying the `activity' of the nematic.

cond-mat.soft↗

arXiv2021

Dual antagonistic role of motor proteins in fluidizing active networks

Cells accomplish diverse functions using the same molecular building blocks, from setting up cytoplasmic flows to generating mechanical forces. In particular, transitions between these non-equilibrium states are triggered by regulating the expression and activity of cytoskeletal proteins. However, how these proteins set the large-scale mechanics of the cytoskeleton and drive such non-equilibrium phase transitions remain poorly understood. Here, we show that a minimal network of biopolymers, molecular motors, and crosslinkers exhibits two distinct emergent behaviors depending on its composition, spontaneously flowing like an active fluid, or buckling like an active solid. Molecular motors play a dual antagonistic role, fluidizing or stiffening the network depending on the ATP concentration. By combining experiments, continuum theory, and chemical kinetics, we identify how to assemble materials with targeted activity and elasticity by setting the concentrations of each component. Active and elastic stresses can be further manipulated in situ by light-induced pulses of motor activity, controlling the solid-to-fluid transition. These results highlight how cytoskeletal stresses regulate the self-organization of living matter and set the foundations for the rational design and control of active materials.

cond-mat.soft↗

arXiv2021

Confinement-induced Self-Pumping in 3D Active Fluids

Two dimensional active fluids display a transition from turbulent to coherent flow upon decreasing the size of the confining geometry. A recent experiment suggests that the behavior in three dimensions is remarkably different; emergent flows transition from turbulence to coherence upon \emph{increasing} the confinement height to match the width. Using a simple hydrodynamic model of a suspension of extensile rod-like units, we provide the theoretical explanation for this puzzling behavior. Furthermore, using extensive numerical simulations supported by theoretical arguments, we map out the conditions that lead to coherent flows and elucidate the critical role played by the aspect ratio of the confining channel. The mechanism that we identify applies to a large class of symmetries and propulsion mechanisms, leading to a unified set of design principles for self-pumping 3D active fluids.

cond-mat.soft↗

arXiv2020

Confinement controlled bend instability of three-dimensional active fluids

Spontaneous growth of long-wavelength deformations is a defining feature of active fluids with orientational order. We investigate the effect of biaxial rectangular confinement on the instability of initially shear-aligned 3D isotropic active fluids composed of extensile microtubule bundles and kinesin molecular motors. Under confinement, such fluids exhibit finite-wavelength self-amplifying bend deformations which grow in the plane orthogonal to the direction of the strongest confinement. Both the instability wavelength and the growth rate increase with weakening confinement. These findings are consistent with a minimal hydrodynamic model, which predicts that the fastest growing deformation is set by a balance of active driving and elastic relaxation. Experiments in the highly confined regime confirm that the instability wavelength is set by the balance of active and elastic stresses, which are independently controlled by the concentration of motors and non-motile crosslinkers.

cond-mat.soft↗

arXiv2019

Topological structure and dynamics of three dimensional active nematics

Point-like motile topological defects control the universal dynamics of diverse two-dimensional active nematics ranging from shaken granular rods to cellular monolayers. A comparable understanding in higher dimensions has yet to emerge. We report the creation of three-dimensional active nematics by dispersing extensile microtubule bundles in a passive colloidal liquid crystal. Light-sheet microscopy reveals the millimeter-scale structure of active nematics with a single bundle resolution and the temporal evolution of the associated nematic director field. The dominant excitations of three-dimensional active nematics are extended charge-neutral disclination loops that undergo complex dynamics and recombination events. These studies introduce a new class of non-equilibrium systems whose turbulent-like dynamics arises from the interplay between internally generated active stresses, the chaotic flows and the topological structure of the constituent defects.

cond-mat.soft↗