arXiv subjects

Miquel Huix-Rotllant

Publications and source records attributed to Miquel Huix-Rotllant.

6 recordsLinked to original sources

arXiv2024

Efficient polarizable QM/MM using the direct reaction field Hamiltonian with electrostatic potential fitted multipole operators

Electronic polarization and dispersion are decisive actors in determining interaction energies between molecules. These interactions have a particularly profound effect on excitation energies of molecules in complex environments, especially when the excitation involves a significant degree of charge reorganisation. The direct reaction field (DRF) approach, which has seen a recent revival of interest, provides a powerful framework for describing these interactions in quantum mechanics/molecular mechanics (QM/MM) models of systems, where a small subsystem of interest is described using quantum chemical methods and the remainder is treated with a simple MM force field. In this paper we show how the DRF approach can be combined with the electrostatic potential fitted (ESPF) multipole operator description of the QM region charge density, which significantly improves the efficiency of the method, particularly for large MM systems, and for typical calculations effectively eliminates the dependence on MM system size. We also show how the DRF approach can be combined with fluctuating charge descriptions of the polarizable environment, as well as previously used atom-centred dipole-polarizability based models. We further show that the ESPF-DRF method provides an accurate description of molecular interactions in both ground and excited electronic states of the QM system and apply it to predict the gas to aqueous solution solvatochromic shifts in the UV/visible absorption spectrum of acrolein.

physics.chem-ph↗

arXiv2020

Analytic energy, gradient, and hessian of electrostatic embedding QM/MM based on electrostatic potential fitted atomic charges scaling linearly with the MM subsystem size

Electrostatic potential fitting method (ESPF) is a powerful way of defining atomic charges derived from quantum density matrices fitted to reproduce a quantum mechanical charge distribution in the presence of an external electrostatic potential. These can be used in the Hamiltonian to define a robust and efficient electrostatic embedding QM/MM method. The original formulation of ESPF QM/MM contained two main approximations, namely, the neglect of grid derivatives and the non-conservation of the total QM charge. Here, we present a new ESPF atomic charge operator which solves these drawbacks at virtually no extra computational cost. The new charge operators employ atom-centered grids and conserve the total charge when traced with the density matrix. We present an efficient and easy-to-implement analytic form for the energy, gradient, and hessian that scale linearly with the MM subsystem size. We show that grid derivatives and charge conservation are fundamental to preserve the translational invariance properties of energies and its derivatives and exact conditions to be satisfied by the atomic charge derivatives. As proof of concept, we compute the transition state that leads to the formation of hydrogen peroxide during cryptochrome's reoxidation reaction. Last, we show that the construction of the full QM/MM hessian scales linearly with the MM subsystem size.

physics.chem-ph↗

arXiv2020

Efficient analytic second derivative of electrostatic embedding QM/MM energy: normal mode analysis of plant cryptochrome

Analytic second derivatives of electrostatic embedding (EE) quantum mechanics/molecular mechanics (QM/MM) energy are important for performing vibrational analysis and simulating vibrational spectra of quantum systems interacting with an environment represented as a classical electrostatic potential. The main bottleneck of EE-QM/MM second derivatives is the solution of coupled perturbed equations for each MM atom perturbation. Here, we exploit the Q-vector method {[J. Chem. Phys., 151, 041102 (2019)]} to workaround this bottleneck. We derive the full analytic second derivative of the EE-QM/MM energy, which allows to compute QM, MM and QM-MM Hessian blocks in an efficient and easy to implement manner. To show the capabilities of our method, we compute the normal modes for the full \textit{arabidopsis thaliana} plant cryptochrome. We show that the flavin adenine dinucleotide vibrations (QM subsystem) strongly mix with protein modes. We compute approximate vibronic couplings for the lowest bright transition, from which we extract spectral densities and the homogeneous broadening of FAD absorption spectrum in protein using vibrationally resolved electronic spectrum simulations.

physics.chem-ph↗

arXiv2015

Many-Body Perturbation Theory (MBPT) and Time-Dependent Density-Functional Theory (TD-DFT): MBPT Insights About What is Missing in, and Corrections to, the TD-DFT Adiabatic Approximation

In their famous paper Kohn and Sham formulated a formally exact density-functional theory (DFT) for the ground-state energy and density of a system of $N$ interacting electrons, albeit limited at the time by certain troubling representability questions. As no practical exact form of the exchange-correlation (xc) energy functional was known, the xc-functional had to be approximated, ideally by a local or semilocal functional. Nowadays however the realization that Nature is not always so nearsighted has driven us up Perdew's Jacob's ladder to find increasingly nonlocal density/wavefunction hybrid functionals. Time-dependent (TD-) DFT is a younger development which allows DFT concepts to be used to describe the temporal evolution of the density in the presence of a perturbing field. Linear response (LR) theory then allows spectra and other information about excited states to be extracted from TD-DFT. Once again the exact TD-DFT xc-functional must be approximated in practical calculations and this has historically been done using the TD-DFT adiabatic approximation (AA) which is to TD-DFT very much like what the local density approximation (LDA) is to conventional ground-state DFT. While some of the recent advances in TD-DFT focus on what can be done within the AA, others explore ways around the AA. After giving an overview of DFT, TD-DFT, and LR-TD-DFT, this article will focus on many-body corrections to LR-TD-DFT as one way to building hybrid density-functional/wavefunction methodology for incorporating aspects of nonlocality in time not present in the AA.

cond-mat.mes-hall↗

arXiv2015

Coherent vs Thermally Activated Singlet Exciton Fission in Acene Derivatives From First Principles Quantum Dynamics Simulations: Molecular Packing Makes the Difference

The mechanisms underlying coherent and thermally activated singlet exciton fission in pi-stacked acene crystals are clarified based on quantum dynamics simulations parameterized against a highly correlated description of the electronic excitations and their couplings to intramolecular and intermolecular vibrations. In TIPS-pentacene crystals, the relative longitudinal shift of the molecular backbones yields large electronic couplings of the triplet exciton pair with both the singlet exciton and charge transfer (CT) states. CT-mediated superexchange and direct pathways are found to contribute synergetically to the ultrafast (100fs) singlet fission process driven by vibronic coherences. By contrast, the electronic couplings for singlet fission strictly vanish at the equilibrium pi-stacking of rubrene that exhibits C2h symmetry. In this case, the process is incoherent and driven by excitations of symmetry-breaking intermolecular vibrations, rationalizing the experimentally observed temperature dependence.

cond-mat.mtrl-sci↗

arXiv2010

Assessment of Dressed Time-Dependent Density-Functional Theory for the Low-Lying Valence States of 28 Organic Chromophores

Almost all time-dependent density-functional theory (TDDFT) calculations of excited states make use of the adiabatic approximation, which implies a frequency-independent exchange-correlation kernel that limits applications to one-hole/one-particle states. To remedy this problem, Maitra et al.[J.Chem.Phys. 120, 5932 (2004)] proposed dressed TDDFT (D-TDDFT), which includes explicit two-hole/two-particle states by adding a frequency-dependent term to adiabatic TDDFT. This paper offers the first extensive test of D-TDDFT, and its ability to represent excitation energies in a general fashion. We present D-TDDFT excited states for 28 chromophores and compare them with the benchmark results of Schreiber et al.[J.Chem.Phys. 128, 134110 (2008).] We find the choice of functional used for the A-TDDFT step to be critical for positioning the 1h1p states with respect to the 2h2p states. We observe that D-TDDFT without HF exchange increases the error in excitations already underestimated by A-TDDFT. This problem is largely remedied by implementation of D- TDDFT including Hartree-Fock exchange.

cond-mat.mes-hall↗