arXiv subjects

Mira Marcus-Kalish

Publications and source records attributed to Mira Marcus-Kalish.

3 recordsLinked to original sources

arXiv2026

Perspective on Bias in Biomedical AI: Preventing Downstream Healthcare Disparities

Healthcare disparities persist across socioeconomic boundaries, often attributed to unequal access to screening, diagnostics, and therapeutics. However, this perspective highlights that critical biases can emerge much earlier, during data collection and research prioritization, long before clinical implementation, particularly in studies focused on molecular and omics data. A vast number of studies focus on collecting omics data, but the demographic information associated with these datasets is often not reported, and when it is reported, it reveals substantial biases. An automated analysis of 4514 PubMed-indexed omics publications from 2015 to 2024, examining reporting across multiple demographic dimensions, reveals limited reporting overall; for example, only 2.7% of studies report ancestry or ethnicity information and geographic origin reporting is limited to 2.5%. Analysis of large-scale datasets commonly used for model training, such as CellxGene and GEO, reveals substantial population bias where European-ancestry data dominates. As biomedical foundation models become central to biomedical discovery with a paradigm in which base models are pretrained on large datasets and reusing them repeatedly for many different downstream tasks, they risk perpetuating or amplifying these early-stage biases, leading to cascading inequities that regulatory interventions cannot fully reverse. We propose a community-wide focus on three foundational principles: Provenance, Openness, and Reliability through Evaluation Transparency. Together, these principles can help make biases and limitations more visible to model developers and users, supporting more informed model development, evaluation, and deployment decisions in biomedical AI.

cs.AI↗

arXiv2025

Reducing Calls to the Simulator in Simulation Based Inference (SBI)

Simulation-Based Inference (SBI) deals with statistical inference in problems where the data are generated from a system that is described by a complex stochastic simulator. The challenge for inference in these problems is that the likelihood is intractable; SBI proceeds by using the simulator to sample from the likelihood. In many real world applications, simulator calls are expensive, limiting the associated sample size. Our goal in this work is to extend SBI to exploit two proposals for reducing simulator calls: to draw likelihood samples from a Neural Density Estimator (NDE) surrogate rather than from the stochastic simulator; and use of Support Points rather than simple random sampling to generate evaluation sites. We embed these methods in the Sequential Neural Posterior Estimator (SNPE) algorithm. Across a suite of test cases, we find that the NDE surrogate improves the quality of the inference; support points worked well in some examples, but not in others.

stat.CO↗

arXiv2023

Federated Statistical Analysis: Non-parametric Testing and Quantile Estimation

The age of big data has fueled expectations for accelerating learning. The availability of large data sets enables researchers to achieve more powerful statistical analyses and enhances the reliability of conclusions, which can be based on a broad collection of subjects. Often such data sets can be assembled only with access to diverse sources; for example, medical research that combines data from multiple centers in a federated analysis. However these hopes must be balanced against data privacy concerns, which hinder sharing raw data among centers. Consequently, federated analyses typically resort to sharing data summaries from each center. The limitation to summaries carries the risk that it will impair the efficiency of statistical analysis procedures. In this work we take a close look at the effects of federated analysis on two very basic problems, nonparametric comparison of two groups and quantile estimation to describe the corresponding distributions. We also propose a specific privacy-preserving data release policy for federated analysis with the $K$-anonymity criterion, which has been adopted by the Medical Informatics Platform of the European Human Brain Project. Our results show that, for our tasks, there is only a modest loss of statistical efficiency.

stat.ME↗