arXiv subjects

Mohamad Yaser Jaradeh

Publications and source records attributed to Mohamad Yaser Jaradeh.

15 recordsLinked to original sources

arXiv2025

Towards AI-Supported Research: a Vision of the TIB AIssistant

The rapid advancements in Generative AI and Large Language Models promise to transform the way research is conducted, potentially offering unprecedented opportunities to augment scholarly workflows. However, effectively integrating AI into research remains a challenge due to varying domain requirements, limited AI literacy, the complexity of coordinating tools and agents, and the unclear accuracy of Generative AI in research. We present the vision of the TIB AIssistant, a domain-agnostic human-machine collaborative platform designed to support researchers across disciplines in scientific discovery, with AI assistants supporting tasks across the research life cycle. The platform offers modular components - including prompt and tool libraries, a shared data store, and a flexible orchestration framework - that collectively facilitate ideation, literature analysis, methodology development, data analysis, and scholarly writing. We describe the conceptual framework, system architecture, and implementation of an early prototype that demonstrates the feasibility and potential impact of our approach.

cs.AI↗

arXiv2025

Introducing ORKG ASK: an AI-driven Scholarly Literature Search and Exploration System Taking a Neuro-Symbolic Approach

As the volume of published scholarly literature continues to grow, finding relevant literature becomes increasingly difficult. With the rise of generative Artificial Intelligence (AI), and particularly Large Language Models (LLMs), new possibilities emerge to find and explore literature. We introduce ASK (Assistant for Scientific Knowledge), an AI-driven scholarly literature search and exploration system that follows a neuro-symbolic approach. ASK aims to provide active support to researchers in finding relevant scholarly literature by leveraging vector search, LLMs, and knowledge graphs. The system allows users to input research questions in natural language and retrieve relevant articles. ASK automatically extracts key information and generates answers to research questions using a Retrieval-Augmented Generation (RAG) approach. We present an evaluation of ASK, assessing the system's usability and usefulness. Findings indicate that the system is user-friendly and users are generally satisfied while using the system.

cs.IR↗

arXiv2024

ORKG ASK: a Neuro-symbolic Scholarly Search and Exploration System

Purpose: Finding scholarly articles is a time-consuming and cumbersome activity, yet crucial for conducting science. Due to the growing number of scholarly articles, new scholarly search systems are needed to effectively assist researchers in finding relevant literature. Methodology: We take a neuro-symbolic approach to scholarly search and exploration by leveraging state-of-the-art components, including semantic search, Large Language Models (LLMs), and Knowledge Graphs (KGs). The semantic search component composes a set of relevant articles. From this set of articles, information is extracted and presented to the user. Findings: The presented system, called ORKG ASK (Assistant for Scientific Knowledge), provides a production-ready search and exploration system. Our preliminary evaluation indicates that our proposed approach is indeed suitable for the task of scholarly information retrieval. Value: With ORKG ASK, we present a next-generation scholarly search and exploration system and make it available online. Additionally, the system components are open source with a permissive license.

cs.DL↗

arXiv2024

Rethinking the production and publication of machine-reusable expressions of research findings

Literature is the primary expression of scientific knowledge and an important source of research data. However, scientific knowledge expressed in narrative text documents is not inherently machine reusable. To facilitate knowledge reuse, e.g. for synthesis research, scientific knowledge must be extracted from articles and organized into databases post-publication. The high time costs and inaccuracies associated with completing these activities manually has driven the development of techniques that automate knowledge extraction. Tackling the problem with a different mindset, we propose a pre-publication approach, known as reborn, that ensures scientific knowledge is born reusable, i.e. produced in a machine-reusable format during knowledge production. We implement the approach using the Open Research Knowledge Graph infrastructure for FAIR scientific knowledge organization. We test the approach with three use cases, and discuss the role of publishers and editors in scaling the approach. Our results suggest that the proposed approach is superior compared to classical manual and semi-automated post-publication extraction techniques in terms of knowledge richness and accuracy as well as technological simplicity.

cs.DL↗

arXiv2022

MORTY: Structured Summarization for Targeted Information Extraction from Scholarly Articles

Information extraction from scholarly articles is a challenging task due to the sizable document length and implicit information hidden in text, figures, and citations. Scholarly information extraction has various applications in exploration, archival, and curation services for digital libraries and knowledge management systems. We present MORTY, an information extraction technique that creates structured summaries of text from scholarly articles. Our approach condenses the article's full-text to property-value pairs as a segmented text snippet called structured summary. We also present a sizable scholarly dataset combining structured summaries retrieved from a scholarly knowledge graph and corresponding publicly available scientific articles, which we openly publish as a resource for the research community. Our results show that structured summarization is a suitable approach for targeted information extraction that complements other commonly used methods such as question answering and named entity recognition.

cs.CL↗

arXiv2022

Open Research Knowledge Graph:A System Walkthrough

Despite improved digital access to scholarly literature in the last decades, the fundamental principles of scholarly communication remain unchanged and continue to be largely document-based. Scholarly knowledge remains locked in representations that are inadequate for machine processing. The Open Research Knowledge Graph (ORKG) is an infrastructure for representing, curating and exploring scholarly knowledge in a machine actionable manner. We demonstrate the core functionality of ORKG for representing research contributions published in scholarly articles. A video of the demonstration and the system are available online.

cs.DL↗

arXiv2022

Plumber: A Modular Framework to Create Information Extraction Pipelines

Information Extraction (IE) tasks are commonly studied topics in various domains of research. Hence, the community continuously produces multiple techniques, solutions, and tools to perform such tasks. However, running those tools and integrating them within existing infrastructure requires time, expertise, and resources. One pertinent task here is triples extraction and linking, where structured triples are extracted from a text and aligned to an existing Knowledge Graph (KG). In this paper, we present PLUMBER, the first framework that allows users to manually and automatically create suitable IE pipelines from a community-created pool of tools to perform triple extraction and alignment on unstructured text. Our approach provides an interactive medium to alter the pipelines and perform IE tasks. A short video to show the working of the framework for different use-cases is available online under: https://www.youtube.com/watch?v=XC9rJNIUv8g

cs.CL↗

arXiv2021

Triple Classification for Scholarly Knowledge Graph Completion

Scholarly Knowledge Graphs (KGs) provide a rich source of structured information representing knowledge encoded in scientific publications. With the sheer volume of published scientific literature comprising a plethora of inhomogeneous entities and relations to describe scientific concepts, these KGs are inherently incomplete. We present exBERT, a method for leveraging pre-trained transformer language models to perform scholarly knowledge graph completion. We model triples of a knowledge graph as text and perform triple classification (i.e., belongs to KG or not). The evaluation shows that exBERT outperforms other baselines on three scholarly KG completion datasets in the tasks of triple classification, link prediction, and relation prediction. Furthermore, we present two scholarly datasets as resources for the research community, collected from public KGs and online resources.

cs.CL↗

arXiv2021

Better Call the Plumber: Orchestrating Dynamic Information Extraction Pipelines

In the last decade, a large number of Knowledge Graph (KG) information extraction approaches were proposed. Albeit effective, these efforts are disjoint, and their collective strengths and weaknesses in effective KG information extraction (IE) have not been studied in the literature. We propose Plumber, the first framework that brings together the research community's disjoint IE efforts. The Plumber architecture comprises 33 reusable components for various KG information extraction subtasks, such as coreference resolution, entity linking, and relation extraction. Using these components,Plumber dynamically generates suitable information extraction pipelines and offers overall 264 distinct pipelines.We study the optimization problem of choosing suitable pipelines based on input sentences. To do so, we train a transformer-based classification model that extracts contextual embeddings from the input and finds an appropriate pipeline. We study the efficacy of Plumber for extracting the KG triples using standard datasets over two KGs: DBpedia, and Open Research Knowledge Graph (ORKG). Our results demonstrate the effectiveness of Plumber in dynamically generating KG information extraction pipelines,outperforming all baselines agnostics of the underlying KG. Furthermore,we provide an analysis of collective failure cases, study the similarities and synergies among integrated components, and discuss their limitations.

cs.CL↗

arXiv2020

Knowledge Graphs Evolution and Preservation -- A Technical Report from ISWS 2019

One of the grand challenges discussed during the Dagstuhl Seminar "Knowledge Graphs: New Directions for Knowledge Representation on the Semantic Web" and described in its report is that of a: "Public FAIR Knowledge Graph of Everything: We increasingly see the creation of knowledge graphs that capture information about the entirety of a class of entities. [...] This grand challenge extends this further by asking if we can create a knowledge graph of "everything" ranging from common sense concepts to location based entities. This knowledge graph should be "open to the public" in a FAIR manner democratizing this mass amount of knowledge." Although linked open data (LOD) is one knowledge graph, it is the closest realisation (and probably the only one) to a public FAIR Knowledge Graph (KG) of everything. Surely, LOD provides a unique testbed for experimenting and evaluating research hypotheses on open and FAIR KG. One of the most neglected FAIR issues about KGs is their ongoing evolution and long term preservation. We want to investigate this problem, that is to understand what preserving and supporting the evolution of KGs means and how these problems can be addressed. Clearly, the problem can be approached from different perspectives and may require the development of different approaches, including new theories, ontologies, metrics, strategies, procedures, etc. This document reports a collaborative effort performed by 9 teams of students, each guided by a senior researcher as their mentor, attending the International Semantic Web Research School (ISWS 2019). Each team provides a different perspective to the problem of knowledge graph evolution substantiated by a set of research questions as the main subject of their investigation. In addition, they provide their working definition for KG preservation and evolution.

cs.AI↗

arXiv2020

Challenges of Linking Organizational Information in Open Government Data to Knowledge Graphs

Open Government Data (OGD) is being published by various public administration organizations around the globe. Within the metadata of OGD data catalogs, the publishing organizations (1) are not uniquely and unambiguously identifiable and, even worse, (2) change over time, by public administration units being merged or restructured. In order to enable fine-grained analyses or searches on Open Government Data on the level of publishing organizations, linking those from OGD portals to publicly available knowledge graphs (KGs) such as Wikidata and DBpedia seems like an obvious solution. Still, as we show in this position paper, organization linking faces significant challenges, both in terms of available (portal) metadata and KGs in terms of data quality and completeness. We herein specifically highlight five main challenges, namely regarding (1) temporal changes in organizations and in the portal metadata, (2) lack of a base ontology for describing organizational structures and changes in public knowledge graphs, (3) metadata and KG data quality, (4) multilinguality, and (5) disambiguating public sector organizations. Based on available OGD portal metadata from the Open Data Portal Watch, we provide an in-depth analysis of these issues, make suggestions for concrete starting points on how to tackle them along with a call to the community to jointly work on these open challenges.

cs.CY↗

arXiv2020

The STEM-ECR Dataset: Grounding Scientific Entity References in STEM Scholarly Content to Authoritative Encyclopedic and Lexicographic Sources

We introduce the STEM (Science, Technology, Engineering, and Medicine) Dataset for Scientific Entity Extraction, Classification, and Resolution, version 1.0 (STEM-ECR v1.0). The STEM-ECR v1.0 dataset has been developed to provide a benchmark for the evaluation of scientific entity extraction, classification, and resolution tasks in a domain-independent fashion. It comprises abstracts in 10 STEM disciplines that were found to be the most prolific ones on a major publishing platform. We describe the creation of such a multidisciplinary corpus and highlight the obtained findings in terms of the following features: 1) a generic conceptual formalism for scientific entities in a multidisciplinary scientific context; 2) the feasibility of the domain-independent human annotation of scientific entities under such a generic formalism; 3) a performance benchmark obtainable for automatic extraction of multidisciplinary scientific entities using BERT-based neural models; 4) a delineated 3-step entity resolution procedure for human annotation of the scientific entities via encyclopedic entity linking and lexicographic word sense disambiguation; and 5) human evaluations of Babelfy returned encyclopedic links and lexicographic senses for our entities. Our findings cumulatively indicate that human annotation and automatic learning of multidisciplinary scientific concepts as well as their semantic disambiguation in a wide-ranging setting as STEM is reasonable.

cs.IR↗

arXiv2020

Question Answering on Scholarly Knowledge Graphs

Answering questions on scholarly knowledge comprising text and other artifacts is a vital part of any research life cycle. Querying scholarly knowledge and retrieving suitable answers is currently hardly possible due to the following primary reason: machine inactionable, ambiguous and unstructured content in publications. We present JarvisQA, a BERT based system to answer questions on tabular views of scholarly knowledge graphs. Such tables can be found in a variety of shapes in the scholarly literature (e.g., surveys, comparisons or results). Our system can retrieve direct answers to a variety of different questions asked on tabular data in articles. Furthermore, we present a preliminary dataset of related tables and a corresponding set of natural language questions. This dataset is used as a benchmark for our system and can be reused by others. Additionally, JarvisQA is evaluated on two datasets against other baselines and shows an improvement of two to three folds in performance compared to related methods.

cs.IR↗

arXiv2019

Towards Optimisation of Collaborative Question Answering over Knowledge Graphs

Collaborative Question Answering (CQA) frameworks for knowledge graphs aim at integrating existing question answering (QA) components for implementing sequences of QA tasks (i.e. QA pipelines). The research community has paid substantial attention to CQAs since they support reusability and scalability of the available components in addition to the flexibility of pipelines. CQA frameworks attempt to build such pipelines automatically by solving two optimisation problems: 1) local collective performance of QA components per QA task and 2) global performance of QA pipelines. In spite offering several advantages over monolithic QA systems, the effectiveness and efficiency of CQA frameworks in answering questions is limited. In this paper, we tackle the problem of local optimisation of CQA frameworks and propose a three fold approach, which applies feature selection techniques with supervised machine learning approaches in order to identify the best performing components efficiently. We have empirically evaluated our approach over existing benchmarks and compared to existing automatic CQA frameworks. The observed results provide evidence that our approach answers a higher number of questions than the state of the art while reducing: i) the number of used features by 50% and ii) the number of components used by 76%.

cs.CL↗

arXiv2019

Open Research Knowledge Graph: Next Generation Infrastructure for Semantic Scholarly Knowledge

Despite improved digital access to scholarly knowledge in recent decades, scholarly communication remains exclusively document-based. In this form, scholarly knowledge is hard to process automatically. In this paper, we present the first steps towards a knowledge graph based infrastructure that acquires scholarly knowledge in machine actionable form thus enabling new possibilities for scholarly knowledge curation, publication and processing. The primary contribution is to present, evaluate and discuss multi-modal scholarly knowledge acquisition, combining crowdsourced and automated techniques. We present the results of the first user evaluation of the infrastructure with the participants of a recent international conference. Results suggest that users were intrigued by the novelty of the proposed infrastructure and by the possibilities for innovative scholarly knowledge processing it could enable.

cs.DL↗