arXiv subjects

Mohamed Elmanna

Publications and source records attributed to Mohamed Elmanna.

3 recordsLinked to original sources

arXiv2026

HTC-SGA Former: A Hybrid Transformer-CNN Network with Self-Guided Attention and a New Boundary-Weighted Adaptive Loss for Coronary DSA Vessel Segmentation

Accurate coronary Digital Subtraction Angiography (DSA) vessel segmentation is essential for computer-aided diagnosis and treatment planning of coronary artery disease (CAD). However, thin low-contrast vessels, background interference, and severe vessel-background class imbalance make reliable segmentation of weak distal branches and vessel boundaries challenging. Existing methods struggle to balance global contextual reasoning with preservation of weak vessels, vessel continuity, and fine boundaries. To address these limitations, we propose HTC-SGA Former, a lightweight hybrid Transformer-CNN framework for coronary DSA vessel segmentation. It employs a CNN encoder for local vessel morphology extraction and a Transformer decoder for contextual feature modeling. A Multi-Scale Global-Local Window Attention (MS-GLWA) block performs efficient global-local contextual modeling, while a Self-Guided Feature Attention (SGFA) module enhances weak-vessel responses. In addition, a Boundary-Weighted Adaptive Compound Loss (BWACL) emphasizes thin-vessel boundaries and adaptively balances vessel recovery and boundary refinement. Experiments on private right and left coronary artery DSA subsets show that HTC-SGA Former outperforms 14 state-of-the-art segmentation methods while maintaining a compact architecture with only 0.81M parameters. BWACL also improves performance over binary cross-entropy and Dice losses across four encoder-decoder architectures, demonstrating strong cross-backbone applicability. HTC-SGA Former improves thin-vessel recovery, vessel continuity, and boundary localization through complementary global-local contextual modeling, vessel-focused refinement, and adaptive optimization, supporting reliable and computationally efficient coronary vessel analysis for future computer-assisted cardiovascular interventions.

cs.CV↗

arXiv2026

MSA-UNet3+: Multi-Scale Attention UNet3+ with New Supervised Prototypical Contrastive Loss for Coronary DSA Image Segmentation

Accurate segmentation of coronary Digital Subtraction Angiography (DSA) images is essential for diagnosing and treating coronary artery disease (CAD). Despite advances in deep learning, challenges such as high intra-class variance and class imbalance limit precise vessel delineation. Existing approaches for coronary DSA segmentation cannot effectively address these issues. Furthermore, existing segmentation network encoders do not directly generate semantic embeddings, which could enable the decoder to reconstruct segmentation masks more effectively. We propose a Supervised Prototypical Contrastive Loss (SPCL) that combines supervised and prototypical contrastive learning to enhance coronary DSA image segmentation. The supervised contrastive loss enforces semantic embeddings in the encoder, improving feature differentiation. The prototypical contrastive loss enables the model to focus on the foreground class while alleviating high intra-class variance and class imbalance by concentrating only on hard-to-classify background samples. We implement the proposed SPCL within MSA-UNet3+, a Multi-Scale Attention-Enhanced UNet3+ architecture. The architecture integrates a Multi-Scale Attention Encoder (M-encoder), a Multi-Scale Dilated Bottleneck (MSD-Bottleneck) for multi-scale feature extraction, and a Contextual Attention Fusion Module (CAFM) to preserve fine-grained details while improving contextual understanding. Experiments on a private coronary DSA dataset demonstrate that MSA-UNet3+ outperforms state-of-the-art methods, achieving the highest Dice coefficient and F1-score while significantly reducing ASD and ACD. The framework provides precise vessel segmentation for accurate identification of coronary stenosis and supports informed diagnostic and therapeutic decisions. The code will be released at https://github.com/rayanmerghani/MSA-UNet3plus.

eess.IV↗

arXiv2024

Deep Learning Segmentation and Classification of Red Blood Cells Using a Large Multi-Scanner Dataset

Digital pathology has recently been revolutionized by advancements in artificial intelligence, deep learning, and high-performance computing. With its advanced tools, digital pathology can help improve and speed up the diagnostic process, reduce human errors, and streamline the reporting step. In this paper, we report a new large red blood cell (RBC) image dataset and propose a two-stage deep learning framework for RBC image segmentation and classification. The dataset is a highly diverse dataset of more than 100K RBCs containing eight different classes. The dataset, which is considerably larger than any publicly available hematopathology dataset, was labeled independently by two hematopathologists who also manually created masks for RBC cell segmentation. Subsequently, in the proposed framework, first, a U-Net model was trained to achieve automatic RBC image segmentation. Second, an EfficientNetB0 model was trained to classify RBC images into one of the eight classes using a transfer learning approach with a 5X2 cross-validation scheme. An IoU of 98.03% and an average classification accuracy of 96.5% were attained on the test set. Moreover, we have performed experimental comparisons against several prominent CNN models. These comparisons show the superiority of the proposed model with a good balance between performance and computational cost.

eess.IV↗