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Mohamed Helmy

Publications and source records attributed to Mohamed Helmy.

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Drugst.One -- A plug-and-play solution for online systems medicine and network-based drug repurposing

In recent decades, the development of new drugs has become increasingly expensive and inefficient, and the molecular mechanisms of most pharmaceuticals remain poorly understood. In response, computational systems and network medicine tools have emerged to identify potential drug repurposing candidates. However, these tools often require complex installation and lack intuitive visual network mining capabilities. To tackle these challenges, we introduce Drugst.One, a platform that assists specialized computational medicine tools in becoming user-friendly, web-based utilities for drug repurposing. With just three lines of code, Drugst.One turns any systems biology software into an interactive web tool for modeling and analyzing complex protein-drug-disease networks. Demonstrating its broad adaptability, Drugst.One has been successfully integrated with 21 computational systems medicine tools. Available at https://drugst.one, Drugst.One has significant potential for streamlining the drug discovery process, allowing researchers to focus on essential aspects of pharmaceutical treatment research.

q-bio.QM

Buffalo Genome Projects: Current Situation and Future Perspective in Improving Breeding Programs

Buffaloes are farm animals that contribute to food security by providing high quality meat and milk. They can better tolerate the adverse effects of global climate change on their meat and milk production. Despite their advantages, buffaloes are heavily neglected animals with fewer studies compared to other farm animals, hence, the real potential of buffaloes has never been realized. The complete genome sequencing projects of buffaloes are essential to better understanding the buffalos biology and production since they allow scientists to identify important genes and understand how the gene networks interact to determine the critical features of buffaloes. The genome projects are also valuable for gaining better knowledge of growth, development, maintenance, and determining factors associated with increased meat and milk production. Furthermore, having access to a complete genome of high quality and comprehensive annotations provides a powerful tool in breeding programs. The current review surveyed the publicly available buffalo genome projects and studied the impact of incorporating genomic selection into the buffalo breeding program. Our survey of the publicly available buffalo genome projects showed the promise of genomic selection in developing water buffalo science and technology for food security on a global scale.

q-bio.GN