arXiv subjects

Mohammadhossein Firouznia

Publications and source records attributed to Mohammadhossein Firouznia.

7 recordsLinked to original sources

arXiv2026

Polarization of the Drosophila oocyte by active cortical exchange

Anterior-posterior polarization in the Drosophila oocyte requires posterior localization of oskar mRNA. oskar mRNA is produced in the anteriorly situated nurse cells, moved into the oocyte, and assembled into oskar-Staufen ribonucleoprotein particles (RNPs). These RNPs then move through the oocyte and interact with the cortex, where myosin-V binds them to the actin network and kinesin-1 removes them along cortically anchored microtubules. This cortical tug-of-war takes place against an anterior-to-posterior decrease in microtubule density. How the interplay between cytoplasmic transport and cortical binding and unbinding produces a stable posterior cap is unclear. Here, we combine quantitative microscopy, photoconversion experiments, experimental perturbations, and biophysical modeling to show that posterior localization emerges from position-dependent cortical exchange coupled to cytoplasmic diffusion. Our model, which accounts for the tendency of RNPs to demix, suggests that two key parameters that determine the observed localization pattern are the total amount of oskar and the ratio of cortical unbinding to binding rates (the exchange equilibrium constant). Given oskar volume fractions in wild-type, the measured exchange constant is such that oskar localizes to the posterior cortex without demixing. If the balance is broken, say by increasing unbinding rates, oskar irreversibly demixes into cytoplasmic droplets. This is consistent with observations from our experimental perturbations. Our results show how bulk diffusion and cortical exchange, in the face of oskar RNPs' self-attraction, convert a cytoskeletal asymmetry into robust developmental polarity.

physics.bio-ph↗

arXiv2025

Condensation dynamics of sticky and anchored flexible biopolymers

Cells regulate gene expression in part by forming DNA-protein condensates in the nucleus. While existing theories describe the equilibrium size and stability of such condensates, their dynamics remain less understood. Here, we use coarse-grained 3D Brownian-dynamics simulations to study how long, end-anchored biopolymers condense over time due to transient crosslinking. By tracking how clusters nucleate, merge, and disappear, we identify two dominant dynamical pathways, ripening and merging, that govern the progression from an uncompacted chain to a single condensate. We show how microscopic kinetic parameters, protein density, and mechanical constraints shape these pathways. Using insights from the simulations, we construct a minimal mechanistic free-energy model that captures the observed scaling behavior. Together, these results clarify the dynamical determinants of DNA and chromatin reorganization on timescales relevant to gene regulation.

cond-mat.soft↗

arXiv2025

Electrohydrodynamic drift of a drop away from an insulating wall

An isolated charge-neutral drop suspended in an unbounded medium does not migrate in a uniform DC electric field. A nearby wall breaks the symmetry and causes the drop to drift towards or away from the boundary, depending on the electric properties of the fluids and the wall. In the case of an electrically insulating wall and an electric field applied tangentially to the wall, the interaction of the drop with its electrostatic image gives rise to repulsion by the wall. However, the electrohydrodynamic flow causes either repulsion for a drop with $\mathrm{R/P}<1$, where $\mathrm{R}$ and $\mathrm{P}$ are the drop-to-medium ratios of conductivity and permittivity, respectively, or attraction for $\mathrm{R/P}>1$. We experimentally measure droplet trajectories and quantify the wall-induced electrohydrodynamic lift in the case $\mathrm{R/P}<1$. Numerical simulations using the boundary integral method agree well with the experiment and also explore the $\mathrm{R/P}>1$ case. The results show that the lateral migration of a drop in a uniform electric field applied parallel to an insulating wall is dominated by the long-range flow due to the image stresslet.

physics.flu-dyn↗

arXiv2024

Self-organized dynamics of a viscous drop with interfacial nematic activity

We study emergent dynamics in a viscous drop subject to interfacial nematic activity. Using hydrodynamic simulations, we show how the interplay of nematodynamics, activity-driven flows and surface deformations gives rise to a sequence of self-organized behaviors of increasing complexity, from periodic braiding motions of topological defects to chaotic defect dynamics and active turbulence, along with spontaneous shape changes and translation. Our findings recapitulate qualitative features of experiments and shed light on the mechanisms underpinning morphological dynamics in active interfaces.

cond-mat.soft↗

arXiv2022

A spectral boundary integral method for simulating electrohydrodynamic flows in viscous drops

A weakly conducting liquid droplet immersed in another leaky dielectric liquid can exhibit rich dynamical behaviors under the effect of an applied electric field. Depending on material properties and field strength, the nonlinear coupling of interfacial charge transport and fluid flow can trigger electrohydrodynamic instabilities that lead to shape deformations and complex dynamics. We present a spectral boundary integral method to simulate droplet electrohydrodynamics in a uniform electric field. All physical variables, such as drop shape and interfacial charge density, are represented using spherical harmonic expansions. In addition to its exponential accuracy, the spectral representation affords a nondissipative dealiasing method required for numerical stability. A comprehensive charge transport model, valid under a wide range of electric field strengths, accounts for charge relaxation, Ohmic conduction, and surface charge convection by the flow. A shape reparametrization technique enables the exploration of significant droplet deformation regimes. For low-viscosity drops, the convection by the flow drives steep interfacial charge gradients near the drop equator. This introduces numerical ringing artifacts we treat via a weighted spherical harmonic expansion, resulting in solution convergence. The method and simulations are validated against experimental data and analytical predictions in the axisymmetric Taylor and Quincke electrorotation regimes.

physics.flu-dyn↗

arXiv2021

Electrohydrodynamic instabilities in freely suspended viscous films under normal electric fields

Electrohydrodynamic instabilities of fluid-fluid interfaces can be exploited in various microfluidic applications in order to enhance mixing, replicate well-controlled patterns or generate drops of a particular size. In this work, we study the stability and dynamics of a system of three superimposed layers of two immiscible fluids subject to a normal electric field. Following the Taylor-Melcher leaky dielectric model, the bulk remains electroneutral while a net charge accumulates on the interfaces. The interfacial charge dynamics is captured by a conservation equation accounting for Ohmic conduction, advection by the flow and finite charge relaxation. Using this model, we perform a linear stability analysis and identify different modes of instability, and we characterize the behavior of the system as a function of the relevant dimensionless groups in each mode. Further, we perform numerical simulations using the boundary element method in order to study the effect of nonlinearities on long-time interfacial dynamics. We demonstrate how the coupling of flow and surface charge transport in different modes of instability can give rise to nonlinear phenomena such as tip streaming or pinching of the film into droplets.

physics.flu-dyn↗

arXiv2019

Fully developed and transient concentration profiles of particulate suspensions sheared in a cylindrical Couette

We experimentally investigate particle migration in a non-Brownian suspension sheared in a Taylor-Couette configuration and in the limit of vanishing Reynolds number. Highly resolved index-matching techniques are used to measure the local particulate volume fraction. In this wide-gap Taylor-Couette configuration, we find that for a large range of bulk volume fraction, $ϕ_b \in [20\% - 50\%]$, the fully developed concentration profiles are well predicted by the suspension balance model of Nott \& Brady (J. Fluid Mech., vol. 275, 1994, pp. 157-199). Moreover, we provide systematic measurements of the migration strain scale and of the migration amplitude which highlight the limits of the suspension balance model predictions.

cond-mat.soft↗