arXiv subjects

Mohit Prabhushankar

Publications and source records attributed to Mohit Prabhushankar.

53 records · Page 3Linked to original sources

arXiv2022

OLIVES Dataset: Ophthalmic Labels for Investigating Visual Eye Semantics

Clinical diagnosis of the eye is performed over multifarious data modalities including scalar clinical labels, vectorized biomarkers, two-dimensional fundus images, and three-dimensional Optical Coherence Tomography (OCT) scans. Clinical practitioners use all available data modalities for diagnosing and treating eye diseases like Diabetic Retinopathy (DR) or Diabetic Macular Edema (DME). Enabling usage of machine learning algorithms within the ophthalmic medical domain requires research into the relationships and interactions between all relevant data over a treatment period. Existing datasets are limited in that they neither provide data nor consider the explicit relationship modeling between the data modalities. In this paper, we introduce the Ophthalmic Labels for Investigating Visual Eye Semantics (OLIVES) dataset that addresses the above limitation. This is the first OCT and near-IR fundus dataset that includes clinical labels, biomarker labels, disease labels, and time-series patient treatment information from associated clinical trials. The dataset consists of 1268 near-IR fundus images each with at least 49 OCT scans, and 16 biomarkers, along with 4 clinical labels and a disease diagnosis of DR or DME. In total, there are 96 eyes' data averaged over a period of at least two years with each eye treated for an average of 66 weeks and 7 injections. We benchmark the utility of OLIVES dataset for ophthalmic data as well as provide benchmarks and concrete research directions for core and emerging machine learning paradigms within medical image analysis.

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arXiv2022

Introspective Learning : A Two-Stage Approach for Inference in Neural Networks

In this paper, we advocate for two stages in a neural network's decision making process. The first is the existing feed-forward inference framework where patterns in given data are sensed and associated with previously learned patterns. The second stage is a slower reflection stage where we ask the network to reflect on its feed-forward decision by considering and evaluating all available choices. Together, we term the two stages as introspective learning. We use gradients of trained neural networks as a measurement of this reflection. A simple three-layered Multi Layer Perceptron is used as the second stage that predicts based on all extracted gradient features. We perceptually visualize the post-hoc explanations from both stages to provide a visual grounding to introspection. For the application of recognition, we show that an introspective network is 4% more robust and 42% less prone to calibration errors when generalizing to noisy data. We also illustrate the value of introspective networks in downstream tasks that require generalizability and calibration including active learning, out-of-distribution detection, and uncertainty estimation. Finally, we ground the proposed machine introspection to human introspection for the application of image quality assessment.

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arXiv2022

Gradient-Based Adversarial and Out-of-Distribution Detection

We propose to utilize gradients for detecting adversarial and out-of-distribution samples. We introduce confounding labels -- labels that differ from normal labels seen during training -- in gradient generation to probe the effective expressivity of neural networks. Gradients depict the amount of change required for a model to properly represent given inputs, providing insight into the representational power of the model established by network architectural properties as well as training data. By introducing a label of different design, we remove the dependency on ground truth labels for gradient generation during inference. We show that our gradient-based approach allows for capturing the anomaly in inputs based on the effective expressivity of the models with no hyperparameter tuning or additional processing, and outperforms state-of-the-art methods for adversarial and out-of-distribution detection.

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arXiv2022

DECAL: DEployable Clinical Active Learning

Conventional machine learning systems that operate on natural images assume the presence of attributes within the images that lead to some decision. However, decisions in medical domain are a resultant of attributes within medical diagnostic scans and electronic medical records (EMR). Hence, active learning techniques that are developed for natural images are insufficient for handling medical data. We focus on reducing this insufficiency by designing a deployable clinical active learning (DECAL) framework within a bi-modal interface so as to add practicality to the paradigm. Our approach is a "plug-in" method that makes natural image based active learning algorithms generalize better and faster. We find that on two medical datasets on three architectures and five learning strategies, DECAL increases generalization across 20 rounds by approximately 4.81%. DECAL leads to a 5.59% and 7.02% increase in average accuracy as an initialization strategy for optical coherence tomography (OCT) and X-Ray respectively. Our active learning results were achieved using 3000 (5%) and 2000 (38%) samples of OCT and X-Ray data respectively.

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arXiv2022

Volumetric Supervised Contrastive Learning for Seismic Semantic Segmentation

In seismic interpretation, pixel-level labels of various rock structures can be time-consuming and expensive to obtain. As a result, there oftentimes exists a non-trivial quantity of unlabeled data that is left unused simply because traditional deep learning methods rely on access to fully labeled volumes. To rectify this problem, contrastive learning approaches have been proposed that use a self-supervised methodology in order to learn useful representations from unlabeled data. However, traditional contrastive learning approaches are based on assumptions from the domain of natural images that do not make use of seismic context. In order to incorporate this context within contrastive learning, we propose a novel positive pair selection strategy based on the position of slices within a seismic volume. We show that the learnt representations from our method out-perform a state of the art contrastive learning methodology in a semantic segmentation task.

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arXiv2022

Explanatory Paradigms in Neural Networks

In this article, we present a leap-forward expansion to the study of explainability in neural networks by considering explanations as answers to abstract reasoning-based questions. With $P$ as the prediction from a neural network, these questions are `Why P?', `What if not P?', and `Why P, rather than Q?' for a given contrast prediction $Q$. The answers to these questions are observed correlations, observed counterfactuals, and observed contrastive explanations respectively. Together, these explanations constitute the abductive reasoning scheme. We term the three explanatory schemes as observed explanatory paradigms. The term observed refers to the specific case of post-hoc explainability, when an explanatory technique explains the decision $P$ after a trained neural network has made the decision $P$. The primary advantage of viewing explanations through the lens of abductive reasoning-based questions is that explanations can be used as reasons while making decisions. The post-hoc field of explainability, that previously only justified decisions, becomes active by being involved in the decision making process and providing limited, but relevant and contextual interventions. The contributions of this article are: ($i$) realizing explanations as reasoning paradigms, ($ii$) providing a probabilistic definition of observed explanations and their completeness, ($iii$) creating a taxonomy for evaluation of explanations, and ($iv$) positioning gradient-based complete explanainability's replicability and reproducibility across multiple applications and data modalities, ($v$) code repositories, publicly available at https://github.com/olivesgatech/Explanatory-Paradigms.

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arXiv2021

Extracting Causal Visual Features for Limited label Classification

Neural networks trained to classify images do so by identifying features that allow them to distinguish between classes. These sets of features are either causal or context dependent. Grad-CAM is a popular method of visualizing both sets of features. In this paper, we formalize this feature divide and provide a methodology to extract causal features from Grad-CAM. We do so by defining context features as those features that allow contrast between predicted class and any contrast class. We then apply a set theoretic approach to separate causal from contrast features for COVID-19 CT scans. We show that on average, the image regions with the proposed causal features require 15% less bits when encoded using Huffman encoding, compared to Grad-CAM, for an average increase of 3% classification accuracy, over Grad-CAM. Moreover, we validate the transfer-ability of causal features between networks and comment on the non-human interpretable causal nature of current networks.

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arXiv2021

Contrastive Reasoning in Neural Networks

Neural networks represent data as projections on trained weights in a high dimensional manifold. The trained weights act as a knowledge base consisting of causal class dependencies. Inference built on features that identify these dependencies is termed as feed-forward inference. Such inference mechanisms are justified based on classical cause-to-effect inductive reasoning models. Inductive reasoning based feed-forward inference is widely used due to its mathematical simplicity and operational ease. Nevertheless, feed-forward models do not generalize well to untrained situations. To alleviate this generalization challenge, we propose using an effect-to-cause inference model that reasons abductively. Here, the features represent the change from existing weight dependencies given a certain effect. We term this change as contrast and the ensuing reasoning mechanism as contrastive reasoning. In this paper, we formalize the structure of contrastive reasoning and propose a methodology to extract a neural network's notion of contrast. We demonstrate the value of contrastive reasoning in two stages of a neural network's reasoning pipeline : in inferring and visually explaining decisions for the application of object recognition. We illustrate the value of contrastively recognizing images under distortions by reporting an improvement of 3.47%, 2.56%, and 5.48% in average accuracy under the proposed contrastive framework on CIFAR-10C, noisy STL-10, and VisDA datasets respectively.

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arXiv2020

Novelty Detection Through Model-Based Characterization of Neural Networks

In this paper, we propose a model-based characterization of neural networks to detect novel input types and conditions. Novelty detection is crucial to identify abnormal inputs that can significantly degrade the performance of machine learning algorithms. Majority of existing studies have focused on activation-based representations to detect abnormal inputs, which limits the characterization of abnormality from a data perspective. However, a model perspective can also be informative in terms of the novelties and abnormalities. To articulate the significance of the model perspective in novelty detection, we utilize backpropagated gradients. We conduct a comprehensive analysis to compare the representation capability of gradients with that of activation and show that the gradients outperform the activation in novel class and condition detection. We validate our approach using four image recognition datasets including MNIST, Fashion-MNIST, CIFAR-10, and CURE-TSR. We achieve a significant improvement on all four datasets with an average AUROC of 0.953, 0.918, 0.582, and 0.746, respectively.

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arXiv2020

Implicit Saliency in Deep Neural Networks

In this paper, we show that existing recognition and localization deep architectures, that have not been exposed to eye tracking data or any saliency datasets, are capable of predicting the human visual saliency. We term this as implicit saliency in deep neural networks. We calculate this implicit saliency using expectancy-mismatch hypothesis in an unsupervised fashion. Our experiments show that extracting saliency in this fashion provides comparable performance when measured against the state-of-art supervised algorithms. Additionally, the robustness outperforms those algorithms when we add large noise to the input images. Also, we show that semantic features contribute more than low-level features for human visual saliency detection.

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arXiv2020

Contrastive Explanations in Neural Networks

Visual explanations are logical arguments based on visual features that justify the predictions made by neural networks. Current modes of visual explanations answer questions of the form $`Why \text{ } P?'$. These $Why$ questions operate under broad contexts thereby providing answers that are irrelevant in some cases. We propose to constrain these $Why$ questions based on some context $Q$ so that our explanations answer contrastive questions of the form $`Why \text{ } P, \text{} rather \text{ } than \text{ } Q?'$. In this paper, we formalize the structure of contrastive visual explanations for neural networks. We define contrast based on neural networks and propose a methodology to extract defined contrasts. We then use the extracted contrasts as a plug-in on top of existing $`Why \text{ } P?'$ techniques, specifically Grad-CAM. We demonstrate their value in analyzing both networks and data in applications of large-scale recognition, fine-grained recognition, subsurface seismic analysis, and image quality assessment.

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arXiv2020

Backpropagated Gradient Representations for Anomaly Detection

Learning representations that clearly distinguish between normal and abnormal data is key to the success of anomaly detection. Most of existing anomaly detection algorithms use activation representations from forward propagation while not exploiting gradients from backpropagation to characterize data. Gradients capture model updates required to represent data. Anomalies require more drastic model updates to fully represent them compared to normal data. Hence, we propose the utilization of backpropagated gradients as representations to characterize model behavior on anomalies and, consequently, detect such anomalies. We show that the proposed method using gradient-based representations achieves state-of-the-art anomaly detection performance in benchmark image recognition datasets. Also, we highlight the computational efficiency and the simplicity of the proposed method in comparison with other state-of-the-art methods relying on adversarial networks or autoregressive models, which require at least 27 times more model parameters than the proposed method.

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arXiv2019

Distorted Representation Space Characterization Through Backpropagated Gradients

In this paper, we utilize weight gradients from backpropagation to characterize the representation space learned by deep learning algorithms. We demonstrate the utility of such gradients in applications including perceptual image quality assessment and out-of-distribution classification. The applications are chosen to validate the effectiveness of gradients as features when the test image distribution is distorted from the train image distribution. In both applications, the proposed gradient based features outperform activation features. In image quality assessment, the proposed approach is compared with other state of the art approaches and is generally the top performing method on TID 2013 and MULTI-LIVE databases in terms of accuracy, consistency, linearity, and monotonic behavior. Finally, we analyze the effect of regularization on gradients using CURE-TSR dataset for out-of-distribution classification.

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arXiv2019

Semantically Interpretable and Controllable Filter Sets

In this paper, we generate and control semantically interpretable filters that are directly learned from natural images in an unsupervised fashion. Each semantic filter learns a visually interpretable local structure in conjunction with other filters. The significance of learning these interpretable filter sets is demonstrated on two contrasting applications. The first application is image recognition under progressive decolorization, in which recognition algorithms should be color-insensitive to achieve a robust performance. The second application is image quality assessment where objective methods should be sensitive to color degradations. In the proposed work, the sensitivity and lack thereof are controlled by weighing the semantic filters based on the local structures they represent. To validate the proposed approach, we utilize the CURE-TSR dataset for image recognition and the TID 2013 dataset for image quality assessment. We show that the proposed semantic filter set achieves state-of-the-art performances in both datasets while maintaining its robustness across progressive distortions.

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arXiv2018

Generating Adaptive and Robust Filter Sets Using an Unsupervised Learning Framework

In this paper, we introduce an adaptive unsupervised learning framework, which utilizes natural images to train filter sets. The applicability of these filter sets is demonstrated by evaluating their performance in two contrasting applications - image quality assessment and texture retrieval. While assessing image quality, the filters need to capture perceptual differences based on dissimilarities between a reference image and its distorted version. In texture retrieval, the filters need to assess similarity between texture images to retrieve closest matching textures. Based on experiments, we show that the filter responses span a set in which a monotonicity-based metric can measure both the perceptual dissimilarity of natural images and the similarity of texture images. In addition, we corrupt the images in the test set and demonstrate that the proposed method leads to robust and reliable retrieval performance compared to existing methods.

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arXiv2018

MS-UNIQUE: Multi-model and Sharpness-weighted Unsupervised Image Quality Estimation

In this paper, we train independent linear decoder models to estimate the perceived quality of images. More specifically, we calculate the responses of individual non-overlapping image patches to each of the decoders and scale these responses based on the sharpness characteristics of filter set. We use multiple linear decoders to capture different abstraction levels of the image patches. Training each model is carried out on 100,000 image patches from the ImageNet database in an unsupervised fashion. Color space selection and ZCA Whitening are performed over these patches to enhance the descriptiveness of the data. The proposed quality estimator is tested on the LIVE and the TID 2013 image quality assessment databases. Performance of the proposed method is compared against eleven other state of the art methods in terms of accuracy, consistency, linearity, and monotonic behavior. Based on experimental results, the proposed method is generally among the top performing quality estimators in all categories.

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arXiv2018

CURE-TSR: Challenging Unreal and Real Environments for Traffic Sign Recognition

In this paper, we investigate the robustness of traffic sign recognition algorithms under challenging conditions. Existing datasets are limited in terms of their size and challenging condition coverage, which motivated us to generate the Challenging Unreal and Real Environments for Traffic Sign Recognition (CURE-TSR) dataset. It includes more than two million traffic sign images that are based on real-world and simulator data. We benchmark the performance of existing solutions in real-world scenarios and analyze the performance variation with respect to challenging conditions. We show that challenging conditions can decrease the performance of baseline methods significantly, especially if these challenging conditions result in loss or misplacement of spatial information. We also investigate the effect of data augmentation and show that utilization of simulator data along with real-world data enhance the average recognition performance in real-world scenarios. The dataset is publicly available at https://ghassanalregib.com/cure-tsr/.

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