arXiv subjects

Monika Scholz

Publications and source records attributed to Monika Scholz.

4 recordsLinked to original sources

arXiv2026

Neuromodulation-inspired gated associative memory networks: extended memory retrieval and emergent multistability

Classical autoassociative memory models have been central to understanding emergent computations in recurrent neural circuits across diverse biological contexts. However, they typically neglect neuromodulatory agents that are known to strongly shape memory capacity and stability. Here we introduce a minimal, biophysically motivated associative memory network in which neuropeptide-like signals are modeled by a self-adaptive, activity-dependent gating mechanism. Using many-body simulations and dynamical mean-field theory, we show that such gating fundamentally reorganizes the attractor structure: the network bypasses the classical spin-glass transition, maintaining robust, high-overlap retrieval far beyond the standard critical capacity. Mechanistically, when the gates act as fully open or fully closed switches, gating stabilizes transient "ghost" remnants of stored patterns even far above the Hopfield limit, converting a single memory fixed-point attractor into a cluster of fixed points. The retrieved state is set by the initial overlap rather than quantized to the stored pattern. This graded dependence may be exploited for input-driven computation with persistent activity. These results establish that neuromodulation-like gating alone, without modifying synaptic weights or introducing explicit higher-order couplings, can dramatically expand memory capacity, eliminate catastrophic breakdown, and reshape a discrete attractor landscape into a rich continuum, suggesting a general and biologically accessible route to enhanced computational capabilities in neural circuits and neuromorphic architectures.

q-bio.NC↗

arXiv2025

Behavioural Classification in C. elegans: a Spatio-Temporal Analysis of Locomotion

The 1mm roundworm C. elegans is a model organism used in many sub-areas of biology to investigate different types of biological processes. In order to complement the n-vivo analysis with computer-based investigations, several methods have been proposed to simulate the worm behaviour. These methods extract discrete behavioural units from the flow of the worm movements using different types of tracking techniques. Nevertheless, these techniques require a clear view of the entire worm body, which is not always achievable. For example, this happens in high density worm conditions, which are particularly informative to understand the influence of the social context on the single worm behaviour. In this paper, we illustrate and evaluate a method to extract behavioural units from recordings of C. elegans movements which do not necessarily require a clear view of the entire worm body. Moreover, the behavioural units are defined by an unsupervised automatic pipeline which frees the process from predefined assumptions that inevitably bias the behavioural analysis. The behavioural units resulting from the automatic method are interpreted by comparing them with hand-designed behavioural units. The effectiveness of the automatic method is evaluated by measuring the extent to which the movement of a simulated worm, with an agent-based model, matches the movement of a natural worm. Our results indicate that spatio-temporal locomotory patterns emerge even from single point worm tracking. Moreover, we show that such patterns represent a fundamental aspect of the behavioural classification process.

q-bio.QM↗

arXiv2024

The time is ripe to reverse engineer an entire nervous system: simulating behavior from neural interactions

Just like electrical engineers understand how microprocessors execute programs in terms of how transistor currents are affected by their inputs, neuroscientists want to understand behavior production in terms of how neuronal outputs are affected by their inputs and internal states. This dependency of neuronal outputs on inputs can be described by a state-dependent input-output (IO)-function. However, to reliably identify these IO-functions, we need to perturb each input and combinations of inputs while observing all the outputs. Here, we argue that such completeness is possible in C. elegans; a complete description that goes all the way from the activity of every neuron to predict behavior. The established and growing toolkit of optophysiology can non-invasively capture and control every neuron's activity and scale to countless experiments. The information from many such experiments can be pooled while capturing the inter-individual variability because neuronal identity and function are largely conserved across individuals. Just like electrical engineers use transistor IO-functions to simulate program execution, we argue that neuronal IO-functions could be used to simulate the impressive breadth of brain states and behaviors of C. elegans.

q-bio.NC↗

arXiv2016

A cycling state that can lead to glassy dynamics in intracellular transport

Power-law dwell times have been observed for molecular motors in living cells, but the origins of these trapped states are not known. We introduce a minimal model of motors moving on a two-dimensional network of filaments, and simulations of its dynamics exhibit statistics comparable to those observed experimentally. Analysis of the model trajectories, as well as experimental particle tracking data, reveals a state in which motors cycle unproductively at junctions of three or more filaments. We formulate a master equation for these junction dynamics and show that the time required to escape from this vortex-like state can account for the power-law dwell times. We identify trends in the dynamics with the motor valency for further experimental validation. We demonstrate that these trends exist in individual trajectories of myosin II on an actin network. We discuss how cells could regulate intracellular transport and, in turn, biological function, by controlling their cytoskeletal network structures locally.

physics.bio-ph↗