arXiv subjects

Moshe Eliasof

Publications and source records attributed to Moshe Eliasof.

At least 37 records · Page 2Linked to original sources

arXiv2025

Reversing Large Language Models for Efficient Training and Fine-Tuning

Large Language Models (LLMs) are known for their expensive and time-consuming training. Thus, oftentimes, LLMs are fine-tuned to address a specific task, given the pretrained weights of a pre-trained LLM considered a foundation model. In this work, we introduce memory-efficient, reversible architectures for LLMs, inspired by symmetric and symplectic differential equations, and investigate their theoretical properties. Different from standard, baseline architectures that store all intermediate activations, the proposed models use time-reversible dynamics to retrieve hidden states during backpropagation, relieving the need to store activations. This property allows for a drastic reduction in memory consumption, allowing for the processing of larger batch sizes for the same available memory, thereby offering improved throughput. In addition, we propose an efficient method for converting existing, non-reversible LLMs into reversible architectures through fine-tuning, rendering our approach practical for exploiting existing pre-trained models. Our results show comparable or improved performance on several datasets and benchmarks, on several LLMs, building a scalable and efficient path towards reducing the memory and computational costs associated with both training from scratch and fine-tuning of LLMs.

cs.CL↗

arXiv2025

Towards Efficient Training of Graph Neural Networks: A Multiscale Approach

Graph Neural Networks (GNNs) have become powerful tools for learning from graph-structured data, finding applications across diverse domains. However, as graph sizes and connectivity increase, standard GNN training methods face significant computational and memory challenges, limiting their scalability and efficiency. In this paper, we present a novel framework for efficient multiscale training of GNNs. Our approach leverages hierarchical graph representations and subgraphs, enabling the integration of information across multiple scales and resolutions. By utilizing coarser graph abstractions and subgraphs, each with fewer nodes and edges, we significantly reduce computational overhead during training. Building on this framework, we propose a suite of scalable training strategies, including coarse-to-fine learning, subgraph-to-full-graph transfer, and multiscale gradient computation. We also provide some theoretical analysis of our methods and demonstrate their effectiveness across various datasets and learning tasks. Our results show that multiscale training can substantially accelerate GNN training for large scale problems while maintaining, or even improving, predictive performance.

cs.LG↗

arXiv2025

Graph Flow Matching: Enhancing Image Generation with Neighbor-Aware Flow Fields

Flow matching casts sample generation as learning a continuous-time velocity field that transports noise to data. Existing flow matching networks typically predict each point's velocity independently, considering only its location and time along its flow trajectory, and ignoring neighboring points. However, this pointwise approach may overlook correlations between points along the generation trajectory that could enhance velocity predictions, thereby improving downstream generation quality. To address this, we propose Graph Flow Matching (GFM), a lightweight enhancement that decomposes the learned velocity into a reaction term -- any standard flow matching network -- and a diffusion term that aggregates neighbor information via a graph neural module. This reaction-diffusion formulation retains the scalability of deep flow models while enriching velocity predictions with local context, all at minimal additional computational cost. Operating in the latent space of a pretrained variational autoencoder, GFM consistently improves Fréchet Inception Distance (FID) and recall across five image generation benchmarks (LSUN Church, LSUN Bedroom, FFHQ, AFHQ-Cat, and CelebA-HQ at $256\times256$), demonstrating its effectiveness as a modular enhancement to existing flow matching architectures.

cs.LG↗

arXiv2025

Return of ChebNet: Understanding and Improving an Overlooked GNN on Long Range Tasks

ChebNet, one of the earliest spectral GNNs, has largely been overshadowed by Message Passing Neural Networks (MPNNs), which gained popularity for their simplicity and effectiveness in capturing local graph structure. Despite their success, MPNNs are limited in their ability to capture long-range dependencies between nodes. This has led researchers to adapt MPNNs through rewiring or make use of Graph Transformers, which compromises the computational efficiency that characterized early spatial message-passing architectures, and typically disregards the graph structure. Almost a decade after its original introduction, we revisit ChebNet to shed light on its ability to model distant node interactions. We find that out-of-box, ChebNet already shows competitive advantages relative to classical MPNNs and GTs on long-range benchmarks, while maintaining good scalability properties for high-order polynomials. However, we uncover that this polynomial expansion leads ChebNet to an unstable regime during training. To address this limitation, we cast ChebNet as a stable and non-dissipative dynamical system, which we coin Stable-ChebNet. Our Stable-ChebNet model allows for stable information propagation, and has controllable dynamics which do not require the use of eigendecompositions, positional encodings, or graph rewiring. Across several benchmarks, Stable-ChebNet achieves near state-of-the-art performance.

cs.LG↗

arXiv2025

One-Step Offline Distillation of Diffusion-based Models via Koopman Modeling

Diffusion-based generative models have demonstrated exceptional performance, yet their iterative sampling procedures remain computationally expensive. A prominent strategy to mitigate this cost is distillation, with offline distillation offering particular advantages in terms of efficiency, modularity, and flexibility. In this work, we identify two key observations that motivate a principled distillation framework: (1) while diffusion models have been viewed through the lens of dynamical systems theory, powerful and underexplored tools can be further leveraged; and (2) diffusion models inherently impose structured, semantically coherent trajectories in latent space. Building on these observations, we introduce the Koopman Distillation Model (KDM), a novel offline distillation approach grounded in Koopman theory - a classical framework for representing nonlinear dynamics linearly in a transformed space. KDM encodes noisy inputs into an embedded space where a learned linear operator propagates them forward, followed by a decoder that reconstructs clean samples. This enables single-step generation while preserving semantic fidelity. We provide theoretical justification for our approach: (1) under mild assumptions, the learned diffusion dynamics admit a finite-dimensional Koopman representation; and (2) proximity in the Koopman latent space correlates with semantic similarity in the generated outputs, allowing for effective trajectory alignment. KDM achieves highly competitive performance across standard offline distillation benchmarks.

cs.LG↗

arXiv2025

Graph Neural Regularizers for PDE Inverse Problems

We present a framework for solving a broad class of ill-posed inverse problems governed by partial differential equations (PDEs), where the target coefficients of the forward operator are recovered through an iterative regularization scheme that alternates between FEM-based inversion and learned graph neural regularization. The forward problem is numerically solved using the finite element method (FEM), enabling applicability to a wide range of geometries and PDEs. By leveraging the graph structure inherent to FEM discretizations, we employ physics-inspired graph neural networks as learned regularizers, providing a robust, interpretable, and generalizable alternative to standard approaches. Numerical experiments demonstrate that our framework outperforms classical regularization techniques and achieves accurate reconstructions even in highly ill-posed scenarios.

math.NA↗

arXiv2025

On The Expressive Power of GNN Derivatives

Despite significant advances in Graph Neural Networks (GNNs), their limited expressivity remains a fundamental challenge. Research on GNN expressivity has produced many expressive architectures, leading to architecture hierarchies with models of increasing expressive power. Separately, derivatives of GNNs with respect to node features have been widely studied in the context of the oversquashing and over-smoothing phenomena, GNN explainability, and more. To date, these derivatives remain unexplored as a means to enhance GNN expressivity. In this paper, we show that these derivatives provide a natural way to enhance the expressivity of GNNs. We introduce High-Order Derivative GNN (HOD-GNN), a novel method that enhances the expressivity of Message Passing Neural Networks (MPNNs) by leveraging high-order node derivatives of the base model. These derivatives generate expressive structure-aware node embeddings processed by a second GNN in an end-to-end trainable architecture. Theoretically, we show that the resulting architecture family's expressive power aligns with the WL hierarchy. We also draw deep connections between HOD-GNN, Subgraph GNNs, and popular structural encoding schemes. For computational efficiency, we develop a message-passing algorithm for computing high-order derivatives of MPNNs that exploits graph sparsity and parallelism. Evaluations on popular graph learning benchmarks demonstrate HOD-GNN's strong performance on popular graph learning tasks.

cs.LG↗

arXiv2025

Quadratic Binary Optimization with Graph Neural Networks

We investigate a link between Graph Neural Networks (GNNs) and Quadratic Unconstrained Binary Optimization (QUBO) problems, laying the groundwork for GNNs to approximate solutions for these computationally challenging tasks. By analyzing the sensitivity of QUBO formulations, we frame the solution of QUBO problems as a heterophilic node classification task. We then propose QUBO-GNN, an architecture that integrates graph representation learning techniques with QUBO-aware features to approximate solutions efficiently. Additionally, we introduce a self-supervised data generation mechanism to enable efficient and scalable training data acquisition even for large-scale QUBO instances. Experimental evaluations of QUBO-GNN across diverse QUBO problem sizes demonstrate its superior performance compared to exhaustive search and heuristic methods. Finally, we discuss open challenges in the emerging intersection between QUBO optimization and GNN-based learning.

cs.LG↗

arXiv2025

TANGO: Graph Neural Dynamics via Learned Energy and Tangential Flows

We introduce TANGO -- a dynamical systems inspired framework for graph representation learning that governs node feature evolution through a learned energy landscape and its associated descent dynamics. At the core of our approach is a learnable Lyapunov function over node embeddings, whose gradient defines an energy-reducing direction that guarantees convergence and stability. To enhance flexibility while preserving the benefits of energy-based dynamics, we incorporate a novel tangential component, learned via message passing, that evolves features while maintaining the energy value. This decomposition into orthogonal flows of energy gradient descent and tangential evolution yields a flexible form of graph dynamics, and enables effective signal propagation even in flat or ill-conditioned energy regions, that often appear in graph learning. Our method mitigates oversquashing and is compatible with different graph neural network backbones. Empirically, TANGO achieves strong performance across a diverse set of node and graph classification and regression benchmarks, demonstrating the effectiveness of jointly learned energy functions and tangential flows for graph neural networks.

cs.LG↗

arXiv2025

Understanding and Improving Laplacian Positional Encodings For Temporal GNNs

Temporal graph learning has applications in recommendation systems, traffic forecasting, and social network analysis. Although multiple architectures have been introduced, progress in positional encoding for temporal graphs remains limited. Extending static Laplacian eigenvector approaches to temporal graphs through the supra-Laplacian has shown promise, but also poses key challenges: high eigendecomposition costs, limited theoretical understanding, and ambiguity about when and how to apply these encodings. In this paper, we address these issues by (1) offering a theoretical framework that connects supra-Laplacian encodings to per-time-slice encodings, highlighting the benefits of leveraging additional temporal connectivity, (2) introducing novel methods to reduce the computational overhead, achieving up to 56x faster runtimes while scaling to graphs with 50,000 active nodes, and (3) conducting an extensive experimental study to identify which models, tasks, and datasets benefit most from these encodings. Our findings reveal that while positional encodings can significantly boost performance in certain scenarios, their effectiveness varies across different models.

cs.LG↗

arXiv2025

DiTASK: Multi-Task Fine-Tuning with Diffeomorphic Transformations

Pre-trained Vision Transformers now serve as powerful tools for computer vision. Yet, efficiently adapting them for multiple tasks remains a challenge that arises from the need to modify the rich hidden representations encoded by the learned weight matrices, without inducing interference between tasks. Current parameter-efficient methods like LoRA, which apply low-rank updates, force tasks to compete within constrained subspaces, ultimately degrading performance. We introduce DiTASK a novel Diffeomorphic Multi-Task Fine-Tuning approach that maintains pre-trained representations by preserving weight matrix singular vectors, while enabling task-specific adaptations through neural diffeomorphic transformations of the singular values. By following this approach, DiTASK enables both shared and task-specific feature modulations with minimal added parameters. Our theoretical analysis shows that DITASK achieves full-rank updates during optimization, preserving the geometric structure of pre-trained features, and establishing a new paradigm for efficient multi-task learning (MTL). Our experiments on PASCAL MTL and NYUD show that DiTASK achieves state-of-the-art performance across four dense prediction tasks, using 75% fewer parameters than existing methods. Our code is available [here](https://github.com/ipsitmantri/DiTASK).

cs.CV↗

arXiv2025

Improving the Effective Receptive Field of Message-Passing Neural Networks

Message-Passing Neural Networks (MPNNs) have become a cornerstone for processing and analyzing graph-structured data. However, their effectiveness is often hindered by phenomena such as over-squashing, where long-range dependencies or interactions are inadequately captured and expressed in the MPNN output. This limitation mirrors the challenges of the Effective Receptive Field (ERF) in Convolutional Neural Networks (CNNs), where the theoretical receptive field is underutilized in practice. In this work, we show and theoretically explain the limited ERF problem in MPNNs. Furthermore, inspired by recent advances in ERF augmentation for CNNs, we propose an Interleaved Multiscale Message-Passing Neural Networks (IM-MPNN) architecture to address these problems in MPNNs. Our method incorporates a hierarchical coarsening of the graph, enabling message-passing across multiscale representations and facilitating long-range interactions without excessive depth or parameterization. Through extensive evaluations on benchmarks such as the Long-Range Graph Benchmark (LRGB), we demonstrate substantial improvements over baseline MPNNs in capturing long-range dependencies while maintaining computational efficiency.

cs.LG↗

arXiv2025

Learning Regularization for Graph Inverse Problems

In recent years, Graph Neural Networks (GNNs) have been utilized for various applications ranging from drug discovery to network design and social networks. In many applications, it is impossible to observe some properties of the graph directly; instead, noisy and indirect measurements of these properties are available. These scenarios are coined as Graph Inverse Problems (GRIP). In this work, we introduce a framework leveraging GNNs to solve GRIPs. The framework is based on a combination of likelihood and prior terms, which are used to find a solution that fits the data while adhering to learned prior information. Specifically, we propose to combine recent deep learning techniques that were developed for inverse problems, together with GNN architectures, to formulate and solve GRIP. We study our approach on a number of representative problems that demonstrate the effectiveness of the framework.

cs.LG↗

arXiv2025

Towards Graph Foundation Models: A Study on the Generalization of Positional and Structural Encodings

Recent advances in integrating positional and structural encodings (PSEs) into graph neural networks (GNNs) have significantly enhanced their performance across various graph learning tasks. However, the general applicability of these encodings and their potential to serve as foundational representations for graphs remain uncertain. This paper investigates the fine-tuning efficiency, scalability with sample size, and generalization capability of learnable PSEs across diverse graph datasets. Specifically, we evaluate their potential as universal pre-trained models that can be easily adapted to new tasks with minimal fine-tuning and limited data. Furthermore, we assess the expressivity of the learned representations, particularly, when used to augment downstream GNNs. We demonstrate through extensive benchmarking and empirical analysis that PSEs generally enhance downstream models. However, some datasets may require specific PSE-augmentations to achieve optimal performance. Nevertheless, our findings highlight their significant potential to become integral components of future graph foundation models. We provide new insights into the strengths and limitations of PSEs, contributing to the broader discourse on foundation models in graph learning.

cs.LG↗

arXiv2025

On Oversquashing in Graph Neural Networks Through the Lens of Dynamical Systems

A common problem in Message-Passing Neural Networks is oversquashing -- the limited ability to facilitate effective information flow between distant nodes. Oversquashing is attributed to the exponential decay in information transmission as node distances increase. This paper introduces a novel perspective to address oversquashing, leveraging dynamical systems properties of global and local non-dissipativity, that enable the maintenance of a constant information flow rate. We present SWAN, a uniquely parameterized GNN model with antisymmetry both in space and weight domains, as a means to obtain non-dissipativity. Our theoretical analysis asserts that by implementing these properties, SWAN offers an enhanced ability to transmit information over extended distances. Empirical evaluations on synthetic and real-world benchmarks that emphasize long-range interactions validate the theoretical understanding of SWAN, and its ability to mitigate oversquashing.

cs.LG↗

arXiv2025

Towards Invariance to Node Identifiers in Graph Neural Networks

Message-Passing Graph Neural Networks (GNNs) are known to have limited expressive power, due to their message passing structure. One mechanism for circumventing this limitation is to add unique node identifiers (IDs), which break the symmetries that underlie the expressivity limitation. In this work, we highlight a key limitation of the ID framework, and propose an approach for addressing it. We begin by observing that the final output of the GNN should clearly not depend on the specific IDs used. We then show that in practice this does not hold, and thus the learned network does not possess this desired structural property. Such invariance to node IDs may be enforced in several ways, and we discuss their theoretical properties. We then propose a novel regularization method that effectively enforces ID invariance to the network. Extensive evaluations on both real-world and synthetic tasks demonstrate that our approach significantly improves ID invariance and, in turn, often boosts generalization performance.

cs.LG↗

arXiv2025

On the Effectiveness of Random Weights in Graph Neural Networks

Graph Neural Networks (GNNs) have achieved remarkable success across diverse tasks on graph-structured data, primarily through the use of learned weights in message passing layers. In this paper, we demonstrate that random weights can be surprisingly effective, achieving performance comparable to end-to-end training counterparts, across various tasks and datasets. Specifically, we show that by replacing learnable weights with random weights, GNNs can retain strong predictive power, while significantly reducing training time by up to 6$\times$ and memory usage by up to 3$\times$. Moreover, the random weights combined with our construction yield random graph propagation operators, which we show to reduce the problem of feature rank collapse in GNNs. These understandings and empirical results highlight random weights as a lightweight and efficient alternative, offering a compelling perspective on the design and training of GNN architectures.

cs.LG↗

arXiv2025

GRAMA: Adaptive Graph Autoregressive Moving Average Models

Graph State Space Models (SSMs) have recently been introduced to enhance Graph Neural Networks (GNNs) in modeling long-range interactions. Despite their success, existing methods either compromise on permutation equivariance or limit their focus to pairwise interactions rather than sequences. Building on the connection between Autoregressive Moving Average (ARMA) and SSM, in this paper, we introduce GRAMA, a Graph Adaptive method based on a learnable Autoregressive Moving Average (ARMA) framework that addresses these limitations. By transforming from static to sequential graph data, GRAMA leverages the strengths of the ARMA framework, while preserving permutation equivariance. Moreover, GRAMA incorporates a selective attention mechanism for dynamic learning of ARMA coefficients, enabling efficient and flexible long-range information propagation. We also establish theoretical connections between GRAMA and Selective SSMs, providing insights into its ability to capture long-range dependencies. Extensive experiments on 14 synthetic and real-world datasets demonstrate that GRAMA consistently outperforms backbone models and performs competitively with state-of-the-art methods.

cs.LG↗