arXiv subjects

Mousa Alrubayan

Publications and source records attributed to Mousa Alrubayan.

9 recordsLinked to original sources

arXiv2026

Mesoscopic Light Localization and Inverse Participation Ratio Analysis of Tissue Structural Disorder for Optical Cancer Detection

We introduce a mesoscopic physics-based framework that transforms conventional transmission optical micrographs into quantitative maps of tissue structural heterogeneity using the Inverse Participation Ratio (IPR). For the first time, to our knowledge, IPR-based light-localization analysis is applied to cancer tissue imaging to quantify nano- to submicron-scale structural alterations through spatial fluctuations in tissue mass density or refractive index. Unlike conventional morphology-based assessment, this physics-driven approach provides objective structural biomarkers from label-free or routinely stained tissue images. The method establishes a scalable, reproducible platform for quantitative computational pathology and enhanced cancer diagnosis by integrating mesoscopic optical physics with standard optical microscopy.

physics.med-ph↗

arXiv2025

Alterations of brain tissue structural complexity and disorder in Alzheimer's disease (AD): Fractal, multifractal, fractal transformation, and disorder strength analyses

Alzheimer's disease (AD) is characterized by progressive microstructural deterioration in brain tissue, yet conventional imaging and histopathology often lack the sensitivity needed to detect subtle early-stage changes. Here, we present a multiparametric framework combining fractal and multifractal analysis and their distributions to quantify structural alterations in human brain tissue affected by AD. Moreover, from the fractal and multifractal formalism, we introduced an innovative fractal functional distribution method, a novel technique that transforms fractal distribution into a Gaussian form. Statistically, these distribution parameters are easy to interpret and can distinguish between control and diseased tissues. Across samples, we identify pronounced threshold-dependent behavior of fractal and multifractal parameters, reflecting the intrinsic sparsity and heterogeneous intensity landscape of brain tissue. These threshold-sensitive signatures provide a framework for quantitative stage detection and may serve as biomarkers for early pathological transitions. In addition, we studied structural disorder and complexity using our established light localization technique, inverse participation ratio (IPR) analysis. IPR-based analysis demonstrates that increasing IPR pixel size highlights the elevation of structural alterations with disease progression. Together, these integrative analyses establish a robust, multi-scale quantitative framework for detecting microstructural alterations in AD, providing a promising foundation for early diagnosis and improved pathological assessment.

physics.med-ph↗

arXiv2025

Quantitative Characterization of Brain Tissue Alterations in Brain Cancer Using Fractal, Multifractal, and IPR Metrics

We studied the structural alterations between healthy and diseased brain tissues using a multiparametric framework combining fractal analysis, fractal functional transformation, multifractal analysis, and the Inverse Participation Ratio (IPR) analysis. Accurate characterization of brain tissue microstructure is crucial for early detection and diagnosis of cancer. By applying box-counting methods on brightfield microscopy images, we estimated the fractal dimension (Df) and its logarithmic (ln(Df)) and functional (ln(Dtf)) forms to highlight spatial irregularities in the tissue architecture. While Df and ln(Df) exhibited long-tailed distributions distinguishing healthy from cancer tissues, ln(Dtf) provided significantly improved differentiation by emphasizing local structural variations. Additionally, multifractal analysis revealed broader f({\alpha}) vs {\alpha} curves in cancerous samples, reflecting higher heterogeneity. IPR analysis based on light localization further demonstrated increased nanoscale variations in mass density, reflecting higher structural disorder in cancer tissues. Combining these complementary approaches creates a robust framework for measuring tissue complexity and holds great potential to improve microscopic diagnostic methods for brain cancer detection.

physics.med-ph↗

arXiv2025

Alterations of brain tissue structural complexity and disorder in Parkinson disease (PD): Fractal, multifractal, fractal transformation, and disorder strength analyses

Parkinson disease (PD) is marked by progressive neurodegeneration, yet early and subtle structural alterations in brain tissue remain difficult to detect with conventional imaging and analytical methods. Fractal and multifractal frameworks offer a principled way to quantify complex biological architecture, but their diagnostic utility in PD has been largely unexplored. In this study, we investigated the fractal and multifractal characteristics of human brain tissues to identify structural alterations associated with PD. Alongside conventional fractal and multifractal analysis, we employed a recently developed fractal functional distribution method that transforms distributions into a Gaussian form, thereby enhancing quantification. Using this combined approach, we found notable deviations across multiple distribution metrics in PD samples, offering potential for quantitative staging and diagnostic applications. The multifractal analysis revealed threshold-dependent variations in intensity-based measures, which are linked to the sparsity and heterogeneity of neural tissue and suggestive of potential biomarker value. Additionally, we applied inverse participation ratio (IPR) analysis to assess structural disorder, demonstrating that larger IPR pixel sizes correlate with increased structural complexity during disease progression. These complementary analyses outline a multi-layered quantitative profile of PD-related tissue disruption, offering a foundation for earlier, objective assessment of disease-associated microstructural change.

physics.med-ph↗

arXiv2025

Decoding Breast Cancer in X-ray Mammograms: A Multi-Parameter Approach Using Fractals, Multifractals, and Structural Disorder Analysis

We explored the fractal and multifractal characteristics of breast mammogram micrographs to identify quantitative biomarkers associated with breast cancer progression. In addition to conventional fractal and multifractal analyses, we employed a recently developed fractal-functional distribution method, which transforms fractal measures into Gaussian distributions for more robust statistical interpretation. Given the sparsity of mammogram intensity data, we also analyzed how variations in intensity thresholds, used for binary transformations of the fractal dimension, follow unique trajectories that may serve as novel indicators of disease progression. Our findings demonstrate that fractal, multifractal, and fractal-functional parameters effectively differentiate between benign and cancerous tissue. Furthermore, the threshold-dependent behavior of intensity-based fractal measures presents distinct patterns in cancer cases. To complement these analyses, we applied the Inverse Participation Ratio (IPR) light localization technique to quantify structural disorder at the microscopic level. This multi-parametric approach, integrating spatial complexity and structural disorder metrics, offers a promising framework for enhancing the sensitivity and specificity of breast cancer detection.

physics.med-ph↗

arXiv2025

Evaluation and optimization of deep learning models for enhanced detection of brain cancer using transmission optical microscopy of thin brain tissue samples

Optical transmission spectroscopy is one method to understand brain tissue structural properties from brain tissue biopsy samples, yet manual interpretation is resource intensive and prone to inter observer variability. Deep convolutional neural networks (CNNs) offer automated feature learning directly from raw brightfield images. Here, we evaluate ResNet50 and DenseNet121 on a curated dataset of 2,931 bright-field transmission optical microscopy images of thin brain tissue, split into 1,996 for training, 437 for validation, and 498 for testing. Our two stage transfer learning protocol involves initial training of a classifier head on frozen pretrained feature extractors, followed by fine tuning of deeper convolutional blocks with extensive data augmentation (rotations, flips, intensity jitter) and early stopping. DenseNet121 achieves 88.35 percent test accuracy, 0.9614 precision, 0.8667 recall, and 0.9116 F1 score the best performance compared to ResNet50 (82.12 percent, 0.9035, 0.8142, 0.8563). Detailed analysis of confusion matrices, training and validation curves, and classwise prediction distributions illustrates robust convergence and minimal bias. These findings demonstrate the superior generalization of dense connectivity on limited medical datasets and outline future directions for multi-class tumor grading and clinical translation.

physics.med-ph↗

arXiv2025

Automated grading and staging of ovarian cancer using deep learning on the transmission optical microscopy bright-field images of thin biopsy tissue samples

Ovarian cancer remains a challenging malignancy to diagnose and manage, with prognosis heavily dependent on the stage at detection. Accurate grading and staging, primarily based on histopathological examination of biopsy tissue samples, are crucial for treatment planning and predicting outcomes. However, this manual process is time-consuming and subject to inter-observer variability among pathologists. The increasing volume of digital histopathology slides necessitates the development of robust, automated methods to assist in this critical diagnostic step for ovarian cancer. (Methods) This study presents a deep learning framework for the automated prediction of ovarian cancer stage (classified into five categories: 0, I, II, III, IV) using routine histopathological images. We employed a transfer learning approach, fine-tuning a ResNet-101 convolutional neural network pre-trained on ImageNet. The training process incorporated comprehensive data augmentation, weighted random sampling, and class weighting to address dataset characteristics. Hyperparameter optimization for learning rate, dropout rate, and weight decay was performed using a genetic algorithm to enhance model performance and generalization. (Results) Evaluated on an independent test set of ovarian thin tissue brightfield images, the developed model achieved a high overall classification accuracy of 97.62%.

physics.med-ph↗

arXiv2024

Optical probing of fractal and multifractal connection to structural disorder in weakly optical disordered media: Application to cancer detection

The light scattering experiment establishes a relationship between refractive index fluctuations and fractal dimension in weakly scattering tissue-like media. Based on the box-counting approach, an analytical model is developed and shows that the fractal dimension has a functional dependency on the structural disorder or refractive index fluctuation for short-range correlation and approximately linearly depends on each other for tissue-like media. Several parametric imaging systems can be connected using this approach. Further, tissue's weak multifractality optical scattering is explored using the box-counting method. It is shown that with a functional transformation, the distribution follows lognormal distributions.

physics.optics↗

arXiv2024

An AI-directed analytical study on the optical transmission microscopic images of Pseudomonas aeruginosa in planktonic and biofilm states

Biofilms are resistant microbial cell aggregates that pose risks to health and food industries and produce environmental contamination. Accurate and efficient detection and prevention of biofilms are challenging and demand interdisciplinary approaches. This multidisciplinary research reports the application of a deep learning-based artificial intelligence (AI) model for detecting biofilms produced by Pseudomonas aeruginosa with high accuracy. Aptamer DNA templated silver nanocluster (Ag-NC) was used to prevent biofilm formation, which produced images of the planktonic states of the bacteria. Large-volume bright field images of bacterial biofilms were used to design the AI model. In particular, we used U-Net with ResNet encoder enhancement to segment biofilm images for AI analysis. Different degrees of biofilm structures can be efficiently detected using ResNet18 and ResNet34 backbones. The potential applications of this technique are also discussed.

physics.med-ph↗