arXiv subjects

Muhammad Imran Malik

Publications and source records attributed to Muhammad Imran Malik.

18 recordsLinked to original sources

arXiv2026

E-TCAV: Formalizing Penultimate Proxies for Efficient Concept Based Interpretability

TCAV (Testing with Concept Activation Vectors) is an interpretability method that assesses the alignment between the internal representations of a trained neural network and human-understandable, high-level concepts. Though effective, TCAV suffers from significant computational overhead, inter-layer disagreement of TCAV scores, and statistical instability. This work takes a step toward addressing these challenges by introducing E-TCAV, a framework for efficient approximation of TCAV scores, which is based on extensive investigation into three key aspects of the TCAV methodology: 1) the effect of latent classifiers on the stability of TCAV scores, 2) the inter-layer agreement of TCAV scores, and 3) the use of the penultimate layer as a fast proxy for earlier layers for TCAV computation. To ensure a solid foundation for E-TCAV, we conduct extensive evaluations across four different architectures and five datasets, encompassing problems from both computer vision and natural language domains. Our results show that the layers in the final block of the neural network strongly agree with the penultimate layer in terms of the TCAV scores, and the commonly observed variance of the TCAV scores can be attributed to the choice of the latent classifier. Leveraging this inter-layer agreement and the degeneracy of directional sensitivities at the penultimate layer, E-TCAV guarantees linearly scaling speed-ups with respect to the network's size and the number of evaluation samples, marking a step towards efficient model debugging and real-time concept-guided training.

cs.AI↗

arXiv2026

SLUM-i: Semi-supervised Learning for Urban Mapping of Informal Settlements and Data Quality Benchmarking

Very-high-resolution remote-sensing imagery provides a scalable basis for delineating informal settlements, but sparse annotations, severe imbalance between informal-settlement and background pixels, and cross-city heterogeneity in urban morphology and image--mask correspondence complicate model development. We present SLUM-i, a semi-supervised semantic segmentation framework together with a geographically diverse seven-city Earth observation benchmark spanning three continents. The benchmark combines a newly annotated Lahore dataset and companion Karachi and Mumbai datasets with four publicly released city datasets, totaling 14,458 RGB image--mask tiles. We quantify cross-city heterogeneity using class composition, boundary morphology, grayscale separability, correspondence between mask boundaries and image edges, and divergence between measured feature distributions. For label-efficient mapping, SLUM-i combines representation-guided unlabeled-pool curation, using embeddings from a vision foundation model (DINOv2-Small) to remove the least-similar tiles, and Class-Aware Adaptive Thresholding, which adapts pseudo-label acceptance by class through global mean-confidence and per-class mean-softmax exponential moving averages. Experiments at 10%, 20%, and 30% label budgets, using convolutional and vision-transformer backbones and five random seeds, demonstrate improvements over the corresponding UniMatch baselines in multiple city--budget settings, reaching +5.9 percentage points in mean intersection-over-union. At the 30% budget, the ResNet-101 configuration matches or exceeds its corresponding fully labeled supervised baseline in four of seven cities. Both components operate only during training and add no inference overhead.

cs.CV↗

arXiv2025

Brain-Gen: Towards Interpreting Neural Signals for Stimulus Reconstruction Using Transformers and Latent Diffusion Models

Advances in neuroscience and artificial intelligence have enabled preliminary decoding of brain activity. However, despite the progress, the interpretability of neural representations remains limited. A significant challenge arises from the intrinsic properties of electroencephalography (EEG) signals, including high noise levels, spatial diffusion, and pronounced temporal variability. To interpret the neural mechanism underlying thoughts, we propose a transformers-based framework to extract spatial-temporal representations associated with observed visual stimuli from EEG recordings. These features are subsequently incorporated into the attention mechanisms of Latent Diffusion Models (LDMs) to facilitate the reconstruction of visual stimuli from brain activity. The quantitative evaluations on publicly available benchmark datasets demonstrate that the proposed method excels at modeling the semantic structures from EEG signals; achieving up to 6.5% increase in latent space clustering accuracy and 11.8% increase in zero shot generalization across unseen classes while having comparable Inception Score and Fr\'echet Inception Distance with existing baselines. Our work marks a significant step towards generalizable semantic interpretation of the EEG signals.

cs.CV↗

arXiv2025

iBitter-Stack: A Multi-Representation Ensemble Learning Model for Accurate Bitter Peptide Identification

The identification of bitter peptides is crucial in various domains, including food science, drug discovery, and biochemical research. These peptides not only contribute to the undesirable taste of hydrolyzed proteins but also play key roles in physiological and pharmacological processes. However, experimental methods for identifying bitter peptides are time-consuming and expensive. With the rapid expansion of peptide sequence databases in the post-genomic era, the demand for efficient computational approaches to distinguish bitter from non-bitter peptides has become increasingly significant. In this study, we propose a novel stacking-based ensemble learning framework aimed at enhancing the accuracy and reliability of bitter peptide classification. Our method integrates diverse sequence-based feature representations and leverages a broad set of machine learning classifiers. The first stacking layer comprises multiple base classifiers, each trained on distinct feature encoding schemes, while the second layer employs logistic regression to refine predictions using an eight-dimensional probability vector. Extensive evaluations on a carefully curated dataset demonstrate that our model significantly outperforms existing predictive methods, providing a robust and reliable computational tool for bitter peptide identification. Our approach achieves an accuracy of 96.09\% and a Matthews Correlation Coefficient (MCC) of 0.9220 on the independent test set, underscoring its effectiveness and generalizability. To facilitate real-time usage and broader accessibility, we have also developed a user-friendly web server based on the proposed method, which is freely accessible at https://ibitter-stack-webserver.streamlit.app/. This tool enables researchers and practitioners to conveniently screen peptide sequences for bitterness in real-time applications.

q-bio.QM↗

arXiv2024

Block Induced Signature Generative Adversarial Network (BISGAN): Signature Spoofing Using GANs and Their Evaluation

Deep learning is actively being used in biometrics to develop efficient identification and verification systems. Handwritten signatures are a common subset of biometric data for authentication purposes. Generative adversarial networks (GANs) learn from original and forged signatures to generate forged signatures. While most GAN techniques create a strong signature verifier, which is the discriminator, there is a need to focus more on the quality of forgeries generated by the generator model. This work focuses on creating a generator that produces forged samples that achieve a benchmark in spoofing signature verification systems. We use CycleGANs infused with Inception model-like blocks with attention heads as the generator and a variation of the SigCNN model as the base Discriminator. We train our model with a new technique that results in 80% to 100% success in signature spoofing. Additionally, we create a custom evaluation technique to act as a goodness measure of the generated forgeries. Our work advocates generator-focused GAN architectures for spoofing data quality that aid in a better understanding of biometric data generation and evaluation.

cs.CV↗

arXiv2024

A Perspective Analysis of Handwritten Signature Technology

Handwritten signatures are biometric traits at the center of debate in the scientific community. Over the last 40 years, the interest in signature studies has grown steadily, having as its main reference the application of automatic signature verification, as previously published reviews in 1989, 2000, and 2008 bear witness. Ever since, and over the last 10 years, the application of handwritten signature technology has strongly evolved, and much research has focused on the possibility of applying systems based on handwritten signature analysis and processing to a multitude of new fields. After several years of haphazard growth of this research area, it is time to assess its current developments for their applicability in order to draw a structured way forward. This perspective reports a systematic review of the last 10 years of the literature on handwritten signatures with respect to the new scenario, focusing on the most promising domains of research and trying to elicit possible future research directions in this subject.

cs.CV↗

arXiv2023

Few-Shot Learning for Biometric Verification

In machine learning applications, it is common practice to feed as much information as possible. In most cases, the model can handle large data sets that allow to predict more accurately. In the presence of data scarcity, a Few-Shot learning (FSL) approach aims to build more accurate algorithms with limited training data. We propose a novel end-to-end lightweight architecture that verifies biometric data by producing competitive results as compared to state-of-the-art accuracies through Few-Shot learning methods. The dense layers add to the complexity of state-of-the-art deep learning models which inhibits them to be used in low-power applications. In presented approach, a shallow network is coupled with a conventional machine learning technique that exploits hand-crafted features to verify biometric images from multi-modal sources such as signatures, periocular region, iris, face, fingerprints etc. We introduce a self-estimated threshold that strictly monitors False Acceptance Rate (FAR) while generalizing its results hence eliminating user-defined thresholds from ROC curves that are likely to be biased on local data distribution. This hybrid model benefits from few-shot learning to make up for scarcity of data in biometric use-cases. We have conducted extensive experimentation with commonly used biometric datasets. The obtained results provided an effective solution for biometric verification systems.

cs.CV↗

arXiv2022

KENN: Enhancing Deep Neural Networks by Leveraging Knowledge for Time Series Forecasting

End-to-end data-driven machine learning methods often have exuberant requirements in terms of quality and quantity of training data which are often impractical to fulfill in real-world applications. This is specifically true in time series domain where problems like disaster prediction, anomaly detection, and demand prediction often do not have a large amount of historical data. Moreover, relying purely on past examples for training can be sub-optimal since in doing so we ignore one very important domain i.e knowledge, which has its own distinct advantages. In this paper, we propose a novel knowledge fusion architecture, Knowledge Enhanced Neural Network (KENN), for time series forecasting that specifically aims towards combining strengths of both knowledge and data domains while mitigating their individual weaknesses. We show that KENN not only reduces data dependency of the overall framework but also improves performance by producing predictions that are better than the ones produced by purely knowledge and data driven domains. We also compare KENN with state-of-the-art forecasting methods and show that predictions produced by KENN are significantly better even when trained on only 50\% of the data.

cs.LG↗

arXiv2022

ExAID: A Multimodal Explanation Framework for Computer-Aided Diagnosis of Skin Lesions

One principal impediment in the successful deployment of AI-based Computer-Aided Diagnosis (CAD) systems in clinical workflows is their lack of transparent decision making. Although commonly used eXplainable AI methods provide some insight into opaque algorithms, such explanations are usually convoluted and not readily comprehensible except by highly trained experts. The explanation of decisions regarding the malignancy of skin lesions from dermoscopic images demands particular clarity, as the underlying medical problem definition is itself ambiguous. This work presents ExAID (Explainable AI for Dermatology), a novel framework for biomedical image analysis, providing multi-modal concept-based explanations consisting of easy-to-understand textual explanations supplemented by visual maps justifying the predictions. ExAID relies on Concept Activation Vectors to map human concepts to those learnt by arbitrary Deep Learning models in latent space, and Concept Localization Maps to highlight concepts in the input space. This identification of relevant concepts is then used to construct fine-grained textual explanations supplemented by concept-wise location information to provide comprehensive and coherent multi-modal explanations. All information is comprehensively presented in a diagnostic interface for use in clinical routines. An educational mode provides dataset-level explanation statistics and tools for data and model exploration to aid medical research and education. Through rigorous quantitative and qualitative evaluation of ExAID, we show the utility of multi-modal explanations for CAD-assisted scenarios even in case of wrong predictions. We believe that ExAID will provide dermatologists an effective screening tool that they both understand and trust. Moreover, it will be the basis for similar applications in other biomedical imaging fields.

cs.AI↗

arXiv2020

G1020: A Benchmark Retinal Fundus Image Dataset for Computer-Aided Glaucoma Detection

Scarcity of large publicly available retinal fundus image datasets for automated glaucoma detection has been the bottleneck for successful application of artificial intelligence towards practical Computer-Aided Diagnosis (CAD). A few small datasets that are available for research community usually suffer from impractical image capturing conditions and stringent inclusion criteria. These shortcomings in already limited choice of existing datasets make it challenging to mature a CAD system so that it can perform in real-world environment. In this paper we present a large publicly available retinal fundus image dataset for glaucoma classification called G1020. The dataset is curated by conforming to standard practices in routine ophthalmology and it is expected to serve as standard benchmark dataset for glaucoma detection. This database consists of 1020 high resolution colour fundus images and provides ground truth annotations for glaucoma diagnosis, optic disc and optic cup segmentation, vertical cup-to-disc ratio, size of neuroretinal rim in inferior, superior, nasal and temporal quadrants, and bounding box location for optic disc. We also report baseline results by conducting extensive experiments for automated glaucoma diagnosis and segmentation of optic disc and optic cup.

eess.IV↗

arXiv2020

Combining Fine- and Coarse-Grained Classifiers for Diabetic Retinopathy Detection

Visual artefacts of early diabetic retinopathy in retinal fundus images are usually small in size, inconspicuous, and scattered all over retina. Detecting diabetic retinopathy requires physicians to look at the whole image and fixate on some specific regions to locate potential biomarkers of the disease. Therefore, getting inspiration from ophthalmologist, we propose to combine coarse-grained classifiers that detect discriminating features from the whole images, with a recent breed of fine-grained classifiers that discover and pay particular attention to pathologically significant regions. To evaluate the performance of this proposed ensemble, we used publicly available EyePACS and Messidor datasets. Extensive experimentation for binary, ternary and quaternary classification shows that this ensemble largely outperforms individual image classifiers as well as most of the published works in most training setups for diabetic retinopathy detection. Furthermore, the performance of fine-grained classifiers is found notably superior than coarse-grained image classifiers encouraging the development of task-oriented fine-grained classifiers modelled after specialist ophthalmologists.

cs.CV↗

arXiv2020

Two-stage framework for optic disc localization and glaucoma classification in retinal fundus images using deep learning

With the advancement of powerful image processing and machine learning techniques, CAD has become ever more prevalent in all fields of medicine including ophthalmology. Since optic disc is the most important part of retinal fundus image for glaucoma detection, this paper proposes a two-stage framework that first detects and localizes optic disc and then classifies it into healthy or glaucomatous. The first stage is based on RCNN and is responsible for localizing and extracting optic disc from a retinal fundus image while the second stage uses Deep CNN to classify the extracted disc into healthy or glaucomatous. In addition to the proposed solution, we also developed a rule-based semi-automatic ground truth generation method that provides necessary annotations for training RCNN based model for automated disc localization. The proposed method is evaluated on seven publicly available datasets for disc localization and on ORIGA dataset, which is the largest publicly available dataset for glaucoma classification. The results of automatic localization mark new state-of-the-art on six datasets with accuracy reaching 100% on four of them. For glaucoma classification we achieved AUC equal to 0.874 which is 2.7% relative improvement over the state-of-the-art results previously obtained for classification on ORIGA. Once trained on carefully annotated data, Deep Learning based methods for optic disc detection and localization are not only robust, accurate and fully automated but also eliminates the need for dataset-dependent heuristic algorithms. Our empirical evaluation of glaucoma classification on ORIGA reveals that reporting only AUC, for datasets with class imbalance and without pre-defined train and test splits, does not portray true picture of the classifier's performance and calls for additional performance metrics to substantiate the results.

cs.CV↗

arXiv2020

On Interpretability of Deep Learning based Skin Lesion Classifiers using Concept Activation Vectors

Deep learning based medical image classifiers have shown remarkable prowess in various application areas like ophthalmology, dermatology, pathology, and radiology. However, the acceptance of these Computer-Aided Diagnosis (CAD) systems in real clinical setups is severely limited primarily because their decision-making process remains largely obscure. This work aims at elucidating a deep learning based medical image classifier by verifying that the model learns and utilizes similar disease-related concepts as described and employed by dermatologists. We used a well-trained and high performing neural network developed by REasoning for COmplex Data (RECOD) Lab for classification of three skin tumours, i.e. Melanocytic Naevi, Melanoma and Seborrheic Keratosis and performed a detailed analysis on its latent space. Two well established and publicly available skin disease datasets, PH2 and derm7pt, are used for experimentation. Human understandable concepts are mapped to RECOD image classification model with the help of Concept Activation Vectors (CAVs), introducing a novel training and significance testing paradigm for CAVs. Our results on an independent evaluation set clearly shows that the classifier learns and encodes human understandable concepts in its latent representation. Additionally, TCAV scores (Testing with CAVs) suggest that the neural network indeed makes use of disease-related concepts in the correct way when making predictions. We anticipate that this work can not only increase confidence of medical practitioners on CAD but also serve as a stepping stone for further development of CAV-based neural network interpretation methods.

cs.LG↗

arXiv2019

A Robust and Precise ConvNet for small non-coding RNA classification (RPC-snRC)

Functional or non-coding RNAs are attracting more attention as they are now potentially considered valuable resources in the development of new drugs intended to cure several human diseases. The identification of drugs targeting the regulatory circuits of functional RNAs depends on knowing its family, a task which is known as RNA sequence classification. State-of-the-art small noncoding RNA classification methodologies take secondary structural features as input. However, in such classification, feature extraction approaches only take global characteristics into account and completely oversight co-relative effect of local structures. Furthermore secondary structure based approaches incorporate high dimensional feature space which proves computationally expensive. This paper proposes a novel Robust and Precise ConvNet (RPC-snRC) methodology which classifies small non-coding RNAs sequences into their relevant families by utilizing the primary sequence of RNAs. RPC-snRC methodology learns hierarchical representation of features by utilizing positioning and occurrences information of nucleotides. To avoid exploding and vanishing gradient problems, we use an approach similar to DenseNet in which gradient can flow straight from subsequent layers to previous layers. In order to assess the effectiveness of deeper architectures for small non-coding RNA classification, we also adapted two ResNet architectures having different number of layers. Experimental results on a benchmark small non-coding RNA dataset show that our proposed methodology does not only outperform existing small non-coding RNA classification approaches with a significant performance margin of 10% but it also outshines adapted ResNet architectures.

q-bio.GN↗

arXiv2019

A Robust Hybrid Approach for Textual Document Classification

Text document classification is an important task for diverse natural language processing based applications. Traditional machine learning approaches mainly focused on reducing dimensionality of textual data to perform classification. This although improved the overall classification accuracy, the classifiers still faced sparsity problem due to lack of better data representation techniques. Deep learning based text document classification, on the other hand, benefitted greatly from the invention of word embeddings that have solved the sparsity problem and researchers focus mainly remained on the development of deep architectures. Deeper architectures, however, learn some redundant features that limit the performance of deep learning based solutions. In this paper, we propose a two stage text document classification methodology which combines traditional feature engineering with automatic feature engineering (using deep learning). The proposed methodology comprises a filter based feature selection (FSE) algorithm followed by a deep convolutional neural network. This methodology is evaluated on the two most commonly used public datasets, i.e., 20 Newsgroups data and BBC news data. Evaluation results reveal that the proposed methodology outperforms the state-of-the-art of both the (traditional) machine learning and deep learning based text document classification methodologies with a significant margin of 7.7% on 20 Newsgroups and 6.6% on BBC news datasets.

cs.CL↗

arXiv2019

KINN: Incorporating Expert Knowledge in Neural Networks

The promise of ANNs to automatically discover and extract useful features/patterns from data without dwelling on domain expertise although seems highly promising but comes at the cost of high reliance on large amount of accurately labeled data, which is often hard to acquire and formulate especially in time-series domains like anomaly detection, natural disaster management, predictive maintenance and healthcare. As these networks completely rely on data and ignore a very important modality i.e. expert, they are unable to harvest any benefit from the expert knowledge, which in many cases is very useful. In this paper, we try to bridge the gap between these data driven and expert knowledge based systems by introducing a novel framework for incorporating expert knowledge into the network (KINN). Integrating expert knowledge into the network has three key advantages: (a) Reduction in the amount of data needed to train the model, (b) provision of a lower bound on the performance of the resulting classifier by obtaining the best of both worlds, and (c) improved convergence of model parameters (model converges in smaller number of epochs). Although experts are extremely good in solving different tasks, there are some trends and patterns, which are usually hidden only in the data. Therefore, KINN employs a novel residual knowledge incorporation scheme, which can automatically determine the quality of the predictions made by the expert and rectify it accordingly by learning the trends/patterns from data. Specifically, the method tries to use information contained in one modality to complement information missed by the other. We evaluated KINN on a real world traffic flow prediction problem. KINN significantly superseded performance of both the expert and as well as the base network (LSTM in this case) when evaluated in isolation, highlighting its superiority for the task.

cs.LG↗

arXiv2017

AirScript - Creating Documents in Air

This paper presents a novel approach, called AirScript, for creating, recognizing and visualizing documents in air. We present a novel algorithm, called 2-DifViz, that converts the hand movements in air (captured by a Myo-armband worn by a user) into a sequence of x, y coordinates on a 2D Cartesian plane, and visualizes them on a canvas. Existing sensor-based approaches either do not provide visual feedback or represent the recognized characters using prefixed templates. In contrast, AirScript stands out by giving freedom of movement to the user, as well as by providing a real-time visual feedback of the written characters, making the interaction natural. AirScript provides a recognition module to predict the content of the document created in air. To do so, we present a novel approach based on deep learning, which uses the sensor data and the visualizations created by 2-DifViz. The recognition module consists of a Convolutional Neural Network (CNN) and two Gated Recurrent Unit (GRU) Networks. The output from these three networks is fused to get the final prediction about the characters written in air. AirScript can be used in highly sophisticated environments like a smart classroom, a smart factory or a smart laboratory, where it would enable people to annotate pieces of texts wherever they want without any reference surface. We have evaluated AirScript against various well-known learning models (HMM, KNN, SVM, etc.) on the data of 12 participants. Evaluation results show that the recognition module of AirScript largely outperforms all of these models by achieving an accuracy of 91.7% in a person independent evaluation and a 96.7% accuracy in a person dependent evaluation.

cs.HC↗

arXiv2016

A Generic Method for Automatic Ground Truth Generation of Camera-captured Documents

The contribution of this paper is fourfold. The first contribution is a novel, generic method for automatic ground truth generation of camera-captured document images (books, magazines, articles, invoices, etc.). It enables us to build large-scale (i.e., millions of images) labeled camera-captured/scanned documents datasets, without any human intervention. The method is generic, language independent and can be used for generation of labeled documents datasets (both scanned and cameracaptured) in any cursive and non-cursive language, e.g., English, Russian, Arabic, Urdu, etc. To assess the effectiveness of the presented method, two different datasets in English and Russian are generated using the presented method. Evaluation of samples from the two datasets shows that 99:98% of the images were correctly labeled. The second contribution is a large dataset (called C3Wi) of camera-captured characters and words images, comprising 1 million word images (10 million character images), captured in a real camera-based acquisition. This dataset can be used for training as well as testing of character recognition systems on camera-captured documents. The third contribution is a novel method for the recognition of cameracaptured document images. The proposed method is based on Long Short-Term Memory and outperforms the state-of-the-art methods for camera based OCRs. As a fourth contribution, various benchmark tests are performed to uncover the behavior of commercial (ABBYY), open source (Tesseract), and the presented camera-based OCR using the presented C3Wi dataset. Evaluation results reveal that the existing OCRs, which already get very high accuracies on scanned documents, have limited performance on camera-captured document images; where ABBYY has an accuracy of 75%, Tesseract an accuracy of 50.22%, while the presented character recognition system has an accuracy of 95.10%.

cs.CV↗