arXiv subjects

N. Hamedani Radja

Publications and source records attributed to N. Hamedani Radja.

4 recordsLinked to original sources

arXiv2008

Anisotropic Elastic Model for Short DNA Loops

Effect of bending anisotropy on a planar DNA loop, using energy minimization and neglecting entropic effects, is studied. We show that the anisotropy results in polygonal shape of the loop and increasing the anisotropy makes the edges sharper. Calculating the energy of such a loop lets us to find effective persistence length as the geometrical mean of hard and soft rigidities, which is quite different from harmonic mean for an unconstrained long DNA.

cond-mat.soft↗

arXiv2008

A Liquid Film Motor

It is well known that electro-hydrodynamical effects in freely suspended liquid films can flow the liquid. Here we report a purely electrically driven rotation in water and some other liquid suspended films with full control on the velocity and the chirality of the rotating vortices. The device, which is called ``film motor'', consists of a quasi two-dimensional electrolysis cell in an external in-plane electric field, crossing the mean electrolysis current density. If either the external field or the electrolysis voltage exceeds some threshold (while the other one is not zero), the liquid film begins to rotate. The device works perfectly with both DC and AC fields.

cond-mat.soft↗

arXiv2006

A water film motor

We report on electrically-induced rotations in water films, which can function at many length scales. The device consists of a two-dimensional cell used for electrolysis of water films, as simple as an insulator frame with two electrodes on the sides, to which an external in-plane electric field perpendicular to the mean electrolysis current density is applied. If either the external field or the electrolysis current exceeds some threshold (while the other one is not zero), the liquid film begins to rotate.

cond-mat.soft↗

arXiv2005

Conservation of statistical results under the reduction of pair-contact interactions to solvation interactions

We show that the hydrophobicity of sequences is the leading term in Miyazawa-Jernigan interactions. Being the source of additive (solvation) terms in pair-contact interactions, they were used to reduce the energy parameters while resulting in a clear vector manipulation of energy. The reduced (additive) potential performs considerably successful in predicting the statistical properties of arbitrary structures. The evaluated designabilities of the structures by both models are highly correlated. Suggesting geometrically non-degenerate vectors (structures) as protein-like structures, the additive model is a powerful tool for protein design. Moreover, a crossing point in the log-linear diagram of designability-ranking shows that about 1/e of the structures have designabilities above the average, independent on the used model.

q-bio.BM↗