arXiv subjects

Nader Karimi

Publications and source records attributed to Nader Karimi.

At least 37 records · Page 2Linked to original sources

arXiv2022

Focal-UNet: UNet-like Focal Modulation for Medical Image Segmentation

Recently, many attempts have been made to construct a transformer base U-shaped architecture, and new methods have been proposed that outperformed CNN-based rivals. However, serious problems such as blockiness and cropped edges in predicted masks remain because of transformers' patch partitioning operations. In this work, we propose a new U-shaped architecture for medical image segmentation with the help of the newly introduced focal modulation mechanism. The proposed architecture has asymmetric depths for the encoder and decoder. Due to the ability of the focal module to aggregate local and global features, our model could simultaneously benefit the wide receptive field of transformers and local viewing of CNNs. This helps the proposed method balance the local and global feature usage to outperform one of the most powerful transformer-based U-shaped models called Swin-UNet. We achieved a 1.68% higher DICE score and a 0.89 better HD metric on the Synapse dataset. Also, with extremely limited data, we had a 4.25% higher DICE score on the NeoPolyp dataset. Our implementations are available at: https://github.com/givkashi/Focal-UNet

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arXiv2022

A General Framework for Saliency Detection Methods

Saliency detection is one of the most challenging problems in image analysis and computer vision. Many approaches propose different architectures based on the psychological and biological properties of the human visual attention system. However, there is still no abstract framework that summarizes the existing methods. In this paper, we offered a general framework for saliency models, which consists of five main steps: pre-processing, feature extraction, saliency map generation, saliency map combination, and post-processing. Also, we study different saliency models containing each level and compare their performance. This framework helps researchers to have a comprehensive view of studying new methods.

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arXiv2022

An Abstraction Model for Semantic Segmentation Algorithms

Semantic segmentation classifies each pixel in the image. Due to its advantages, semantic segmentation is used in many tasks, such as cancer detection, robot-assisted surgery, satellite image analysis, and self-driving cars. Accuracy and efficiency are the two crucial goals for this purpose, and several state-of-the-art neural networks exist. By employing different techniques, new solutions have been presented in each method to increase efficiency and accuracy and reduce costs. However, the diversity of the implemented approaches for semantic segmentation makes it difficult for researchers to achieve a comprehensive view of the field. In this paper, an abstraction model for semantic segmentation offers a comprehensive view of the field. The proposed framework consists of four general blocks that cover the operation of the majority of semantic segmentation methods. We also compare different approaches and analyze each of the four abstraction blocks' importance in each method's operation.

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arXiv2022

Dynamic-Pix2Pix: Noise Injected cGAN for Modeling Input and Target Domain Joint Distributions with Limited Training Data

Learning to translate images from a source to a target domain with applications such as converting simple line drawing to oil painting has attracted significant attention. The quality of translated images is directly related to two crucial issues. First, the consistency of the output distribution with that of the target is essential. Second, the generated output should have a high correlation with the input. Conditional Generative Adversarial Networks, cGANs, are the most common models for translating images. The performance of a cGAN drops when we use a limited training dataset. In this work, we increase the Pix2Pix (a form of cGAN) target distribution modeling ability with the help of dynamic neural network theory. Our model has two learning cycles. The model learns the correlation between input and ground truth in the first cycle. Then, the model's architecture is refined in the second cycle to learn the target distribution from noise input. These processes are executed in each iteration of the training procedure. Helping the cGAN learn the target distribution from noise input results in a better model generalization during the test time and allows the model to fit almost perfectly to the target domain distribution. As a result, our model surpasses the Pix2Pix model in segmenting HC18 and Montgomery's chest x-ray images. Both qualitative and Dice scores show the superiority of our model. Although our proposed method does not use thousand of additional data for pretraining, it produces comparable results for the in and out-domain generalization compared to the state-of-the-art methods.

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arXiv2022

OAIR: Object-Aware Image Retargeting Using PSO and Aesthetic Quality Assessment

Image retargeting aims at altering an image size while preserving important content and minimizing noticeable distortions. However, previous image retargeting methods create outputs that suffer from artifacts and distortions. Besides, most previous works attempt to retarget the background and foreground of the input image simultaneously. Simultaneous resizing of the foreground and background causes changes in the aspect ratios of the objects. The change in the aspect ratio is specifically not desirable for human objects. We propose a retargeting method that overcomes these problems. The proposed approach consists of the following steps. Firstly, an inpainting method uses the input image and the binary mask of foreground objects to produce a background image without any foreground objects. Secondly, the seam carving method resizes the background image to the target size. Then, a super-resolution method increases the input image quality, and we then extract the foreground objects. Finally, the retargeted background and the extracted super-resolued objects are fed into a particle swarm optimization algorithm (PSO). The PSO algorithm uses aesthetic quality assessment as its objective function to identify the best location and size for the objects to be placed in the background. We used image quality assessment and aesthetic quality assessment measures to show our superior results compared to popular image retargeting techniques.

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arXiv2022

DGAFF: Deep Genetic Algorithm Fitness Formation for EEG Bio-Signal Channel Selection

Brain-computer interface systems aim to facilitate human-computer interactions in a great deal by direct translation of brain signals for computers. Recently, using many electrodes has caused better performance in these systems. However, increasing the number of recorded electrodes leads to additional time, hardware, and computational costs besides undesired complications of the recording process. Channel selection has been utilized to decrease data dimension and eliminate irrelevant channels while reducing the noise effects. Furthermore, the technique lowers the time and computational costs in real-time applications. We present a channel selection method, which combines a sequential search method with a genetic algorithm called Deep GA Fitness Formation (DGAFF). The proposed method accelerates the convergence of the genetic algorithm and increases the system's performance. The system evaluation is based on a lightweight deep neural network that automates the whole model training process. The proposed method outperforms other channel selection methods in classifying motor imagery on the utilized dataset.

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arXiv2021

Brain Tumor Classification by Cascaded Multiscale Multitask Learning Framework Based on Feature Aggregation

Brain tumor analysis in MRI images is a significant and challenging issue because misdiagnosis can lead to death. Diagnosis and evaluation of brain tumors in the early stages increase the probability of successful treatment. However, the complexity and variety of tumors, shapes, and locations make their segmentation and classification complex. In this regard, numerous researchers have proposed brain tumor segmentation and classification methods. This paper presents an approach that simultaneously segments and classifies brain tumors in MRI images using a framework that contains MRI image enhancement and tumor region detection. Eventually, a network based on a multitask learning approach is proposed. Subjective and objective results indicate that the segmentation and classification results based on evaluation metrics are better or comparable to the state-of-the-art.

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arXiv2021

Image Inpainting Using AutoEncoder and Guided Selection of Predicted Pixels

Image inpainting is an effective method to enhance distorted digital images. Different inpainting methods use the information of neighboring pixels to predict the value of missing pixels. Recently deep neural networks have been used to learn structural and semantic details of images for inpainting purposes. In this paper, we propose a network for image inpainting. This network, similar to U-Net, extracts various features from images, leading to better results. We improved the final results by replacing the damaged pixels with the recovered pixels of the output images. Our experimental results show that this method produces high-quality results compare to the traditional methods.

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arXiv2021

Brain Tumor Classification Using Medial Residual Encoder Layers

According to the World Health Organization (WHO), cancer is the second leading cause of death worldwide, responsible for over 9.5 million deaths in 2018 alone. Brain tumors count for one out of every four cancer deaths. Therefore, accurate and timely diagnosis of brain tumors will lead to more effective treatments. Physicians classify brain tumors only with biopsy operation by brain surgery, and after diagnosing the type of tumor, a treatment plan is considered for the patient. Automatic systems based on machine learning algorithms can allow physicians to diagnose brain tumors with noninvasive measures. To date, several image classification approaches have been proposed to aid diagnosis and treatment. For brain tumor classification in this work, we offer a system based on deep learning, containing encoder blocks. These blocks are fed with post-max-pooling features as residual learning. Our approach shows promising results by improving the tumor classification accuracy in Magnetic resonance imaging (MRI) images using a limited medical image dataset. Experimental evaluations of this model on a dataset consisting of 3064 MR images show 95.98% accuracy, which is better than previous studies on this database.

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arXiv2021

Nuclei Segmentation in Histopathology Images using Deep Learning with Local and Global Views

Digital pathology is one of the most significant developments in modern medicine. Pathological examinations are the gold standard of medical protocols and play a fundamental role in diagnosis. Recently, with the advent of digital scanners, tissue histopathology slides can now be digitized and stored as digital images. As a result, digitized histopathological tissues can be used in computer-aided image analysis programs and machine learning techniques. Detection and segmentation of nuclei are some of the essential steps in the diagnosis of cancers. Recently, deep learning has been used for nuclei segmentation. However, one of the problems in deep learning methods for nuclei segmentation is the lack of information from out of the patches. This paper proposes a deep learning-based approach for nuclei segmentation, which addresses the problem of misprediction in patch border areas. We use both local and global patches to predict the final segmentation map. Experimental results on the Multi-organ histopathology dataset demonstrate that our method outperforms the baseline nuclei segmentation and popular segmentation models.

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arXiv2021

MSGDD-cGAN: Multi-Scale Gradients Dual Discriminator Conditional Generative Adversarial Network

Conditional Generative Adversarial Networks (cGANs) have been used in many image processing tasks. However, they still have serious problems maintaining the balance between conditioning the output on the input and creating the output with the desired distribution based on the corresponding ground truth. The traditional cGANs, similar to most conventional GANs, suffer from vanishing gradients, which backpropagate from the discriminator to the generator. Moreover, the traditional cGANs are sensitive to architectural changes due to previously mentioned gradient problems. Therefore, balancing the architecture of the cGANs is almost impossible. Recently MSG-GAN has been proposed to stabilize the performance of the GANs by applying multiple connections between the generator and discriminator. In this work, we propose a method called MSGDD-cGAN, which first stabilizes the performance of the cGANs using multi-connections gradients flow. Secondly, the proposed network architecture balances the correlation of the output to input and the fitness of the output on the target distribution. This balance is generated by using the proposed dual discrimination procedure. We tested our model by segmentation of fetal ultrasound images. Our model shows a 3.18% increase in the F1 score comparing to the pix2pix version of cGANs.

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arXiv2021

Segmentation of Lungs COVID Infected Regions by Attention Mechanism and Synthetic Data

Coronavirus has caused hundreds of thousands of deaths. Fatalities could decrease if every patient could get suitable treatment by the healthcare system. Machine learning, especially computer vision methods based on deep learning, can help healthcare professionals diagnose and treat COVID-19 infected cases more efficiently. Hence, infected patients can get better service from the healthcare system and decrease the number of deaths caused by the coronavirus. This research proposes a method for segmenting infected lung regions in a CT image. For this purpose, a convolutional neural network with an attention mechanism is used to detect infected areas with complex patterns. Attention blocks improve the segmentation accuracy by focusing on informative parts of the image. Furthermore, a generative adversarial network generates synthetic images for data augmentation and expansion of small available datasets. Experimental results show the superiority of the proposed method compared to some existing procedures.

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arXiv2021

Selection of Proper EEG Channels for Subject Intention Classification Using Deep Learning

Brain signals could be used to control devices to assist individuals with disabilities. Signals such as electroencephalograms are complicated and hard to interpret. A set of signals are collected and should be classified to identify the intention of the subject. Different approaches have tried to reduce the number of channels before sending them to a classifier. We are proposing a deep learning-based method for selecting an informative subset of channels that produce high classification accuracy. The proposed network could be trained for an individual subject for the selection of an appropriate set of channels. Reduction of the number of channels could reduce the complexity of brain-computer-interface devices. Our method could find a subset of channels. The accuracy of our approach is comparable with a model trained on all channels. Hence, our model's temporal and power costs are low, while its accuracy is kept high.

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arXiv2021

Weighted Fuzzy-Based PSNR for Watermarking

One of the problems of conventional visual quality evaluation criteria such as PSNR and MSE is the lack of appropriate standards based on the human visual system (HVS). They are calculated based on the difference of the corresponding pixels in the original and manipulated image. Hence, they practically do not provide a correct understanding of the image quality. Watermarking is an image processing application in which the image's visual quality is an essential criterion for its evaluation. Watermarking requires a criterion based on the HVS that provides more accurate values than conventional measures such as PSNR. This paper proposes a weighted fuzzy-based criterion that tries to find essential parts of an image based on the HVS. Then these parts will have larger weights in computing the final value of PSNR. We compare our results against standard PSNR, and our experiments show considerable consequences.

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arXiv2020

Bifurcated Autoencoder for Segmentation of COVID-19 Infected Regions in CT Images

The new coronavirus infection has shocked the world since early 2020 with its aggressive outbreak. Rapid detection of the disease saves lives, and relying on medical imaging (Computed Tomography and X-ray) to detect infected lungs has shown to be effective. Deep learning and convolutional neural networks have been used for image analysis in this context. However, accurate identification of infected regions has proven challenging for two main reasons. Firstly, the characteristics of infected areas differ in different images. Secondly, insufficient training data makes it challenging to train various machine learning algorithms, including deep-learning models. This paper proposes an approach to segment lung regions infected by COVID-19 to help cardiologists diagnose the disease more accurately, faster, and more manageable. We propose a bifurcated 2-D model for two types of segmentation. This model uses a shared encoder and a bifurcated connection to two separate decoders. One decoder is for segmentation of the healthy region of the lungs, while the other is for the segmentation of the infected regions. Experiments on publically available images show that the bifurcated structure segments infected regions of the lungs better than state of the art.

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arXiv2020

Classification of Diabetic Retinopathy Using Unlabeled Data and Knowledge Distillation

Knowledge distillation allows transferring knowledge from a pre-trained model to another. However, it suffers from limitations, and constraints related to the two models need to be architecturally similar. Knowledge distillation addresses some of the shortcomings associated with transfer learning by generalizing a complex model to a lighter model. However, some parts of the knowledge may not be distilled by knowledge distillation sufficiently. In this paper, a novel knowledge distillation approach using transfer learning is proposed. The proposed method transfers the entire knowledge of a model to a new smaller one. To accomplish this, unlabeled data are used in an unsupervised manner to transfer the maximum amount of knowledge to the new slimmer model. The proposed method can be beneficial in medical image analysis, where labeled data are typically scarce. The proposed approach is evaluated in the context of classification of images for diagnosing Diabetic Retinopathy on two publicly available datasets, including Messidor and EyePACS. Simulation results demonstrate that the approach is effective in transferring knowledge from a complex model to a lighter one. Furthermore, experimental results illustrate that the performance of different small models is improved significantly using unlabeled data and knowledge distillation.

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arXiv2020

BlessMark: A Blind Diagnostically-Lossless Watermarking Framework for Medical Applications Based on Deep Neural Networks

Nowadays, with the development of public network usage, medical information is transmitted throughout the hospitals. The watermarking system can help for the confidentiality of medical information distributed over the internet. In medical images, regions-of-interest (ROI) contain diagnostic information. The watermark should be embedded only into non-regions-of-interest (NROI) to keep diagnostic information without distortion. Recently, ROI based watermarking has attracted the attention of the medical research community. The ROI map can be used as an embedding key for improving confidentiality protection purposes. However, in most existing works, the ROI map that is used for the embedding process must be sent as side-information along with the watermarked image. This side information is a disadvantage and makes the extraction process non-blind. Also, most existing algorithms do not recover NROI of the original cover image after the extraction of the watermark. In this paper, we propose a framework for blind diagnostically-lossless watermarking, which iteratively embeds only into NROI. The significance of the proposed framework is in satisfying the confidentiality of the patient information through a blind watermarking system, while it preserves diagnostic/medical information of the image throughout the watermarking process. A deep neural network is used to recognize the ROI map in the embedding, extraction, and recovery processes. In the extraction process, the same ROI map of the embedding process is recognized without requiring any additional information. Hence, the watermark is blindly extracted from the NROI.

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arXiv2020

Hardware Implementation of Adaptive Watermarking Based on Local Spatial Disorder Analysis

With the increasing use of the internet and the ease of exchange of multimedia content, the protection of ownership rights has become a significant concern. Watermarking is an efficient means for this purpose. In many applications, real-time watermarking is required, which demands hardware implementation of low complexity and robust algorithm. In this paper, an adaptive watermarking is presented, which uses embedding in different bit-planes to achieve transparency and robustness. Local disorder of pixels is analyzed to control the strength of the watermark. A new low complexity method for disorder analysis is proposed, and its hardware implantation is presented. An embedding method is proposed, which causes lower degradation in the watermarked image. Also, the performance of proposed watermarking architecture is improved by a pipe-line structure and is tested on an FPGA device. Results show that the algorithm produces transparent and robust watermarked images. The synthesis report from FPGA implementation illustrates a low complexity hardware structure.

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