arXiv subjects

Naimul Khan

Publications and source records attributed to Naimul Khan.

At least 37 records · Page 2Linked to original sources

arXiv2021

Edge-preserving Domain Adaptation for semantic segmentation of Medical Images

Domain Adaptation is a technique to address the lack of massive amounts of labeled data in unseen environments. Unsupervised domain adaptation is proposed to adapt a model to new modalities using solely labeled source data and unlabeled target domain data. Though many image-spaces domain adaptation methods have been proposed to capture pixel-level domain-shift, such techniques may fail to maintain high-level semantic information for the segmentation task. For the case of biomedical images, fine details such as blood vessels can be lost during the image transformation operations between domains. In this work, we propose a model that adapts between domains using cycle-consistent loss while maintaining edge details of the original images by enforcing an edge-based loss during the adaptation process. We demonstrate the effectiveness of our algorithm by comparing it to other approaches on two eye fundus vessels segmentation datasets. We achieve 1.1 to 9.2 increment in DICE score compared to the SOTA and ~5.2 increments compared to a vanilla CycleGAN implementation.

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arXiv2021

Online unsupervised Learning for domain shift in COVID-19 CT scan datasets

Neural networks often require large amounts of expert annotated data to train. When changes are made in the process of medical imaging, trained networks may not perform as well, and obtaining large amounts of expert annotations for each change in the imaging process can be time consuming and expensive. Online unsupervised learning is a method that has been proposed to deal with situations where there is a domain shift in incoming data, and a lack of annotations. The aim of this study is to see whether online unsupervised learning can help COVID-19 CT scan classification models adjust to slight domain shifts, when there are no annotations available for the new data. A total of six experiments are performed using three test datasets with differing amounts of domain shift. These experiments compare the performance of the online unsupervised learning strategy to a baseline, as well as comparing how the strategy performs on different domain shifts. Code for online unsupervised learning can be found at this link: https://github.com/Mewtwo/online-unsupervised-learning

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arXiv2021

ECG Heartbeat Classification Using Multimodal Fusion

Electrocardiogram (ECG) is an authoritative source to diagnose and counter critical cardiovascular syndromes such as arrhythmia and myocardial infarction (MI). Current machine learning techniques either depend on manually extracted features or large and complex deep learning networks which merely utilize the 1D ECG signal directly. Since intelligent multimodal fusion can perform at the stateof-the-art level with an efficient deep network, therefore, in this paper, we propose two computationally efficient multimodal fusion frameworks for ECG heart beat classification called Multimodal Image Fusion (MIF) and Multimodal Feature Fusion (MFF). At the input of these frameworks, we convert the raw ECG data into three different images using Gramian Angular Field (GAF), Recurrence Plot (RP) and Markov Transition Field (MTF). In MIF, we first perform image fusion by combining three imaging modalities to create a single image modality which serves as input to the Convolutional Neural Network (CNN). In MFF, we extracted features from penultimate layer of CNNs and fused them to get unique and interdependent information necessary for better performance of classifier. These informational features are finally used to train a Support Vector Machine (SVM) classifier for ECG heart-beat classification. We demonstrate the superiority of the proposed fusion models by performing experiments on PhysioNets MIT-BIH dataset for five distinct conditions of arrhythmias which are consistent with the AAMI EC57 protocols and on PTB diagnostics dataset for Myocardial Infarction (MI) classification. We achieved classification accuracy of 99.7% and 99.2% on arrhythmia and MI classification, respectively.

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arXiv2021

Multi-level Stress Assessment from ECG in a Virtual Reality Environment using Multimodal Fusion

ECG is an attractive option to assess stress in serious Virtual Reality (VR) applications due to its non-invasive nature. However, the existing Machine Learning (ML) models perform poorly. Moreover, existing studies only perform a binary stress assessment, while to develop a more engaging biofeedback-based application, multi-level assessment is necessary. Existing studies annotate and classify a single experience (e.g. watching a VR video) to a single stress level, which again prevents design of dynamic experiences where real-time in-game stress assessment can be utilized. In this paper, we report our findings on a new study on VR stress assessment, where three stress levels are assessed. ECG data was collected from 9 users experiencing a VR roller coaster. The VR experience was then manually labeled in 10-seconds segments to three stress levels by three raters. We then propose a novel multimodal deep fusion model utilizing spectrogram and 1D ECG that can provide a stress prediction from just a 1-second window. Experimental results demonstrate that the proposed model outperforms the classical HRV-based ML models (9% increase in accuracy) and baseline deep learning models (2.5% increase in accuracy). We also report results on the benchmark WESAD dataset to show the supremacy of the model.

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arXiv2021

Motion Vector Extrapolation for Video Object Detection

Despite the continued successes of computationally efficient deep neural network architectures for video object detection, performance continually arrives at the great trilemma of speed versus accuracy versus computational resources (pick two). Current attempts to exploit temporal information in video data to overcome this trilemma are bottlenecked by the state-of-the-art in object detection models. We present, a technique which performs video object detection through the use of off-the-shelf object detectors alongside existing optical flow based motion estimation techniques in parallel. Through a set of experiments on the benchmark MOT20 dataset, we demonstrate that our approach significantly reduces the baseline latency of any given object detector without sacrificing any accuracy. Further latency reduction, up to 25x lower than the original latency, can be achieved with minimal accuracy loss. MOVEX enables low latency video object detection on common CPU based systems, thus allowing for high performance video object detection beyond the domain of GPU computing. The code is available at https://github.com/juliantrue/movex.

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arXiv2021

Inertial Sensor Data To Image Encoding For Human Action Recognition

Convolutional Neural Networks (CNNs) are successful deep learning models in the field of computer vision. To get the maximum advantage of CNN model for Human Action Recognition (HAR) using inertial sensor data, in this paper, we use 4 types of spatial domain methods for transforming inertial sensor data to activity images, which are then utilized in a novel fusion framework. These four types of activity images are Signal Images (SI), Gramian Angular Field (GAF) Images, Markov Transition Field (MTF) Images and Recurrence Plot (RP) Images. Furthermore, for creating a multimodal fusion framework and to exploit activity image, we made each type of activity images multimodal by convolving with two spatial domain filters : Prewitt filter and High-boost filter. Resnet-18, a CNN model, is used to learn deep features from multi-modalities. Learned features are extracted from the last pooling layer of each ReNet and then fused by canonical correlation based fusion (CCF) for improving the accuracy of human action recognition. These highly informative features are served as input to a multiclass Support Vector Machine (SVM). Experimental results on three publicly available inertial datasets show the superiority of the proposed method over the current state-of-the-art.

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arXiv2021

ECG Heart-beat Classification Using Multimodal Image Fusion

In this paper, we present a novel Image Fusion Model (IFM) for ECG heart-beat classification to overcome the weaknesses of existing machine learning techniques that rely either on manual feature extraction or direct utilization of 1D raw ECG signal. At the input of IFM, we first convert the heart beats of ECG into three different images using Gramian Angular Field (GAF), Recurrence Plot (RP) and Markov Transition Field (MTF) and then fuse these images to create a single imaging modality. We use AlexNet for feature extraction and classification and thus employ end to end deep learning. We perform experiments on PhysioNet MIT-BIH dataset for five different arrhythmias in accordance with the AAMI EC57 standard and on PTB diagnostics dataset for myocardial infarction (MI) classification. We achieved an state of an art results in terms of prediction accuracy, precision and recall.

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arXiv2021

An interpretable object detection based model for the diagnosis of neonatal lung diseases using Ultrasound images

Over the last few decades, Lung Ultrasound (LUS) has been increasingly used to diagnose and monitor different lung diseases in neonates. It is a non invasive tool that allows a fast bedside examination while minimally handling the neonate. Acquiring a LUS scan is easy, but understanding the artifacts concerned with each respiratory disease is challenging. Mixed artifact patterns found in different respiratory diseases may limit LUS readability by the operator. While machine learning (ML), especially deep learning can assist in automated analysis, simply feeding the ultrasound images to an ML model for diagnosis is not enough to earn the trust of medical professionals. The algorithm should output LUS features that are familiar to the operator instead. Therefore, in this paper we present a unique approach for extracting seven meaningful LUS features that can be easily associated with a specific pathological lung condition: Normal pleura, irregular pleura, thick pleura, Alines, Coalescent B-lines, Separate B-lines and Consolidations. These artifacts can lead to early prediction of infants developing later respiratory distress symptoms. A single multi-class region proposal-based object detection model faster-RCNN (fRCNN) was trained on lower posterior lung ultrasound videos to detect these LUS features which are further linked to four common neonatal diseases. Our results show that fRCNN surpasses single stage models such as RetinaNet and can successfully detect the aforementioned LUS features with a mean average precision of 86.4%. Instead of a fully automatic diagnosis from images without any interpretability, detection of such LUS features leave the ultimate control of diagnosis to the clinician, which can result in a more trustworthy intelligent system.

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arXiv2021

GRIHA: Synthesizing 2-Dimensional Building Layouts from Images Captured using a Smart Phone

Reconstructing an indoor scene and generating a layout/floor plan in 3D or 2D is a widely known problem. Quite a few algorithms have been proposed in the literature recently. However, most existing methods either use RGB-D images, thus requiring a depth camera, or depending on panoramic photos, assuming that there is little to no occlusion in the rooms. In this work, we proposed GRIHA (Generating Room Interior of a House using ARCore), a framework for generating a layout using an RGB image captured using a simple mobile phone camera. We take advantage of Simultaneous Localization and Mapping (SLAM) to assess the 3D transformations required for layout generation. SLAM technology is built-in in recent mobile libraries such as ARCore by Google. Hence, the proposed method is fast and efficient. It gives the user freedom to generate layout by merely taking a few conventional photos, rather than relying on specialized depth hardware or occlusion-free panoramic images. We have compared GRIHA with other existing methods and obtained superior results. Also, the system is tested on multiple hardware platforms to test the dependency and efficiency.

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arXiv2020

Targeted Self Supervision for Classification on a Small COVID-19 CT Scan Dataset

Traditionally, convolutional neural networks need large amounts of data labelled by humans to train. Self supervision has been proposed as a method of dealing with small amounts of labelled data. The aim of this study is to determine whether self supervision can increase classification performance on a small COVID-19 CT scan dataset. This study also aims to determine whether the proposed self supervision strategy, targeted self supervision, is a viable option for a COVID-19 imaging dataset. A total of 10 experiments are run comparing the classification performance of the proposed method of self supervision with different amounts of data. The experiments run with the proposed self supervision strategy perform significantly better than their non-self supervised counterparts. We get almost 8% increase in accuracy with full self supervision when compared to no self supervision. The results suggest that self supervision can improve classification performance on a small COVID-19 CT scan dataset. Code for targeted self supervision can be found at this link: https://github.com/Mewtwo/Targeted-Self-Supervision/tree/main/COVID-CT

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arXiv2020

Interpreting Uncertainty in Model Predictions For COVID-19 Diagnosis

COVID-19, due to its accelerated spread has brought in the need to use assistive tools for faster diagnosis in addition to typical lab swab testing. Chest X-Rays for COVID cases tend to show changes in the lungs such as ground glass opacities and peripheral consolidations which can be detected by deep neural networks. However, traditional convolutional networks use point estimate for predictions, lacking in capture of uncertainty, which makes them less reliable for adoption. There have been several works so far in predicting COVID positive cases with chest X-Rays. However, not much has been explored on quantifying the uncertainty of these predictions, interpreting uncertainty, and decomposing this to model or data uncertainty. To address these needs, we develop a visualization framework to address interpretability of uncertainty and its components, with uncertainty in predictions computed with a Bayesian Convolutional Neural Network. This framework aims to understand the contribution of individual features in the Chest-X-Ray images to predictive uncertainty. Providing this as an assistive tool can help the radiologist understand why the model came up with a prediction and whether the regions of interest captured by the model for the specific prediction are of significance in diagnosis. We demonstrate the usefulness of the tool in chest x-ray interpretation through several test cases from a benchmark dataset.

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arXiv2020

Towards Improved Human Action Recognition Using Convolutional Neural Networks and Multimodal Fusion of Depth and Inertial Sensor Data

This paper attempts at improving the accuracy of Human Action Recognition (HAR) by fusion of depth and inertial sensor data. Firstly, we transform the depth data into Sequential Front view Images(SFI) and fine-tune the pre-trained AlexNet on these images. Then, inertial data is converted into Signal Images (SI) and another convolutional neural network (CNN) is trained on these images. Finally, learned features are extracted from both CNN, fused together to make a shared feature layer, and these features are fed to the classifier. We experiment with two classifiers, namely Support Vector Machines (SVM) and softmax classifier and compare their performances. The recognition accuracies of each modality, depth data alone and sensor data alone are also calculated and compared with fusion based accuracies to highlight the fact that fusion of modalities yields better results than individual modalities. Experimental results on UTD-MHAD and Kinect 2D datasets show that proposed method achieves state of the art results when compared to other recently proposed visual-inertial action recognition methods.

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arXiv2020

Multidomain Multimodal Fusion For Human Action Recognition Using Inertial Sensors

One of the major reasons for misclassification of multiplex actions during action recognition is the unavailability of complementary features that provide the semantic information about the actions. In different domains these features are present with different scales and intensities. In existing literature, features are extracted independently in different domains, but the benefits from fusing these multidomain features are not realized. To address this challenge and to extract complete set of complementary information, in this paper, we propose a novel multidomain multimodal fusion framework that extracts complementary and distinct features from different domains of the input modality. We transform input inertial data into signal images, and then make the input modality multidomain and multimodal by transforming spatial domain information into frequency and time-spectrum domain using Discrete Fourier Transform (DFT) and Gabor wavelet transform (GWT) respectively. Features in different domains are extracted by Convolutional Neural networks (CNNs) and then fused by Canonical Correlation based Fusion (CCF) for improving the accuracy of human action recognition. Experimental results on three inertial datasets show the superiority of the proposed method when compared to the state-of-the-art.

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arXiv2020

Multi-level Stress Assessment Using Multi-domain Fusion of ECG Signal

Stress analysis and assessment of affective states of mind using ECG as a physiological signal is a burning research topic in biomedical signal processing. However, existing literature provides only binary assessment of stress, while multiple levels of assessment may be more beneficial for healthcare applications. Furthermore, in present research, ECG signal for stress analysis is examined independently in spatial domain or in transform domains but the advantage of fusing these domains has not been fully utilized. To get the maximum advantage of fusing diferent domains, we introduce a dataset with multiple stress levels and then classify these levels using a novel deep learning approach by converting ECG signal into signal images based on R-R peaks without any feature extraction. Moreover, We made signal images multimodal and multidomain by converting them into time-frequency and frequency domain using Gabor wavelet transform (GWT) and Discrete Fourier Transform (DFT) respectively. Convolutional Neural networks (CNNs) are used to extract features from different modalities and then decision level fusion is performed for improving the classification accuracy. The experimental results on an in-house dataset collected with 15 users show that with proposed fusion framework and using ECG signal to image conversion, we reach an average accuracy of 85.45%.

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arXiv2020

Facial Expression Recognition Under Partial Occlusion from Virtual Reality Headsets based on Transfer Learning

Facial expressions of emotion are a major channel in our daily communications, and it has been subject of intense research in recent years. To automatically infer facial expressions, convolutional neural network based approaches has become widely adopted due to their proven applicability to Facial Expression Recognition (FER) task.On the other hand Virtual Reality (VR) has gained popularity as an immersive multimedia platform, where FER can provide enriched media experiences. However, recognizing facial expression while wearing a head-mounted VR headset is a challenging task due to the upper half of the face being completely occluded. In this paper we attempt to overcome these issues and focus on facial expression recognition in presence of a severe occlusion where the user is wearing a head-mounted display in a VR setting. We propose a geometric model to simulate occlusion resulting from a Samsung Gear VR headset that can be applied to existing FER datasets. Then, we adopt a transfer learning approach, starting from two pretrained networks, namely VGG and ResNet. We further fine-tune the networks on FER+ and RAF-DB datasets. Experimental results show that our approach achieves comparable results to existing methods while training on three modified benchmark datasets that adhere to realistic occlusion resulting from wearing a commodity VR headset. Code for this paper is available at: https://github.com/bita-github/MRP-FER

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arXiv2020

An Efficient Confidence Measure-Based Evaluation Metric for Breast Cancer Screening Using Bayesian Neural Networks

Screening mammograms is the gold standard for detecting breast cancer early. While a good amount of work has been performed on mammography image classification, especially with deep neural networks, there has not been much exploration into the confidence or uncertainty measurement of the classification. In this paper, we propose a confidence measure-based evaluation metric for breast cancer screening. We propose a modular network architecture, where a traditional neural network is used as a feature extractor with transfer learning, followed by a simple Bayesian neural network. Utilizing a two-stage approach helps reducing the computational complexity, making the proposed framework attractive for wider deployment. We show that by providing the medical practitioners with a tool to tune two hyperparameters of the Bayesian neural network, namely, fraction of sampled number of networks and minimum probability, the framework can be adapted as needed by the domain expert. Finally, we argue that instead of just a single number such as accuracy, a tuple (accuracy, coverage, sampled number of networks, and minimum probability) can be utilized as an evaluation metric of our framework. We provide experimental results on the CBIS-DDSM dataset, where we show the trends in accuracy-coverage tradeoff while tuning the two hyperparameters. We also show that our confidence tuning results in increased accuracy with a reduced set of images with high confidence when compared to the baseline transfer learning. To make the proposed framework readily deployable, we provide (anonymized) source code with reproducible results at https://git.io/JvRqE.

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arXiv2020

Locality Guided Neural Networks for Explainable Artificial Intelligence

In current deep network architectures, deeper layers in networks tend to contain hundreds of independent neurons which makes it hard for humans to understand how they interact with each other. By organizing the neurons by correlation, humans can observe how clusters of neighbouring neurons interact with each other. In this paper, we propose a novel algorithm for back propagation, called Locality Guided Neural Network(LGNN) for training networks that preserves locality between neighbouring neurons within each layer of a deep network. Heavily motivated by Self-Organizing Map (SOM), the goal is to enforce a local topology on each layer of a deep network such that neighbouring neurons are highly correlated with each other. This method contributes to the domain of Explainable Artificial Intelligence (XAI), which aims to alleviate the black-box nature of current AI methods and make them understandable by humans. Our method aims to achieve XAI in deep learning without changing the structure of current models nor requiring any post processing. This paper focuses on Convolutional Neural Networks (CNNs), but can theoretically be applied to any type of deep learning architecture. In our experiments, we train various VGG and Wide ResNet (WRN) networks for image classification on CIFAR100. In depth analyses presenting both qualitative and quantitative results demonstrate that our method is capable of enforcing a topology on each layer while achieving a small increase in classification accuracy

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arXiv2019

Human Action Recognition Using Deep Multilevel Multimodal (M2) Fusion of Depth and Inertial Sensors

Multimodal fusion frameworks for Human Action Recognition (HAR) using depth and inertial sensor data have been proposed over the years. In most of the existing works, fusion is performed at a single level (feature level or decision level), missing the opportunity to fuse rich mid-level features necessary for better classification. To address this shortcoming, in this paper, we propose three novel deep multilevel multimodal fusion frameworks to capitalize on different fusion strategies at various stages and to leverage the superiority of multilevel fusion. At input, we transform the depth data into depth images called sequential front view images (SFIs) and inertial sensor data into signal images. Each input modality, depth and inertial, is further made multimodal by taking convolution with the Prewitt filter. Creating "modality within modality" enables further complementary and discriminative feature extraction through Convolutional Neural Networks (CNNs). CNNs are trained on input images of each modality to learn low-level, high-level and complex features. Learned features are extracted and fused at different stages of the proposed frameworks to combine discriminative and complementary information. These highly informative features are served as input to a multi-class Support Vector Machine (SVM). We evaluate the proposed frameworks on three publicly available multimodal HAR datasets, namely, UTD Multimodal Human Action Dataset (MHAD), Berkeley MHAD, and UTD-MHAD Kinect V2. Experimental results show the supremacy of the proposed fusion frameworks over existing methods.

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