arXiv subjects

Nan Yin

Publications and source records attributed to Nan Yin.

At least 37 records · Page 2Linked to original sources

arXiv2025

Degree-Conscious Spiking Graph for Cross-Domain Adaptation

Spiking Graph Networks (SGNs) have demonstrated significant potential in graph classification by emulating brain-inspired neural dynamics to achieve energy-efficient computation. However, existing SGNs are generally constrained to in-distribution scenarios and struggle with distribution shifts. In this paper, we first propose the domain adaptation problem in SGNs, and introduce a novel framework named Degree-Consicious Spiking Graph for Cross-Domain Adaptation (DeSGraDA). DeSGraDA enhances generalization across domains with three key components. First, we introduce the degree-conscious spiking representation module by adapting spike thresholds based on node degrees, enabling more expressive and structure-aware signal encoding. Then, we perform temporal distribution alignment by adversarially matching membrane potentials between domains, ensuring effective performance under domain shift while preserving energy efficiency. Additionally, we extract consistent predictions across two spaces to create reliable pseudo-labels, effectively leveraging unlabeled data to enhance graph classification performance. Furthermore, we establish the first generalization bound for SGDA, providing theoretical insights into its adaptation performance. Extensive experiments on benchmark datasets validate that DeSGraDA consistently outperforms state-of-the-art methods in both classification accuracy and energy efficiency.

cs.LG↗

arXiv2025

DAMR: Efficient and Adaptive Context-Aware Knowledge Graph Question Answering with LLM-Guided MCTS

Knowledge Graph Question Answering (KGQA) aims to interpret natural language queries and perform structured reasoning over knowledge graphs by leveraging their relational and semantic structures to retrieve accurate answers. Existing methods primarily follow either the retrieve-then-reason paradigm, which relies on Graph Neural Networks or heuristic rules to extract static candidate paths, or dynamic path generation strategies that employ LLMs with prompting to jointly perform retrieval and reasoning. However, the former lacks adaptability due to static path extraction and the absence of contextual refinement, while the latter suffers from high computational costs and limited evaluation accuracy because of their dependence on fixed scoring functions and repeated LLM calls. To address these issues, this paper proposes Dynamically Adaptive MCTS-based Reasoning (DAMR), a novel framework that integrates LLM-guided Monte Carlo Tree Search (MCTS) with adaptive path evaluation to enable efficient and context-aware KGQA. DAMR leverages MCTS as a backbone, where an LLM-based planner selects the top-$k$ semantically relevant relations at each expansion step to effectively reduce the search space. To enhance evaluation accuracy, we introduce a lightweight Transformer-based scorer that performs context-aware plausibility estimation by jointly encoding the question and relation sequence through cross-attention, thereby capturing fine-grained semantic shifts during multi-hop reasoning. Furthermore, to mitigate the scarcity of high-quality supervision, DAMR incorporates a dynamic pseudo-path refinement mechanism that periodically generates training signals from partial paths explored during search, enabling the scorer to continually adapt to the evolving distribution of reasoning trajectories. Extensive experiments on multiple KGQA benchmarks show that DAMR significantly outperforms SOTA methods.

cs.CL↗

arXiv2025

Nested Graph Pseudo-Label Refinement for Noisy Label Domain Adaptation Learning

Graph Domain Adaptation (GDA) facilitates knowledge transfer from labeled source graphs to unlabeled target graphs by learning domain-invariant representations, which is essential in applications such as molecular property prediction and social network analysis. However, most existing GDA methods rely on the assumption of clean source labels, which rarely holds in real-world scenarios where annotation noise is pervasive. This label noise severely impairs feature alignment and degrades adaptation performance under domain shifts. To address this challenge, we propose Nested Graph Pseudo-Label Refinement (NeGPR), a novel framework tailored for graph-level domain adaptation with noisy labels. NeGPR first pretrains dual branches, i.e., semantic and topology branches, by enforcing neighborhood consistency in the feature space, thereby reducing the influence of noisy supervision. To bridge domain gaps, NeGPR employs a nested refinement mechanism in which one branch selects high-confidence target samples to guide the adaptation of the other, enabling progressive cross-domain learning. Furthermore, since pseudo-labels may still contain noise and the pre-trained branches are already overfitted to the noisy labels in the source domain, NeGPR incorporates a noise-aware regularization strategy. This regularization is theoretically proven to mitigate the adverse effects of pseudo-label noise, even under the presence of source overfitting, thus enhancing the robustness of the adaptation process. Extensive experiments on benchmark datasets demonstrate that NeGPR consistently outperforms state-of-the-art methods under severe label noise, achieving gains of up to 12.7% in accuracy.

cs.LG↗

arXiv2025

SA-GDA: Spectral Augmentation for Graph Domain Adaptation

Graph neural networks (GNNs) have achieved impressive impressions for graph-related tasks. However, most GNNs are primarily studied under the cases of signal domain with supervised training, which requires abundant task-specific labels and is difficult to transfer to other domains. There are few works focused on domain adaptation for graph node classification. They mainly focused on aligning the feature space of the source and target domains, without considering the feature alignment between different categories, which may lead to confusion of classification in the target domain. However, due to the scarcity of labels of the target domain, we cannot directly perform effective alignment of categories from different domains, which makes the problem more challenging. In this paper, we present the \textit{Spectral Augmentation for Graph Domain Adaptation (\method{})} for graph node classification. First, we observe that nodes with the same category in different domains exhibit similar characteristics in the spectral domain, while different classes are quite different. Following the observation, we align the category feature space of different domains in the spectral domain instead of aligning the whole features space, and we theoretical proof the stability of proposed \method{}. Then, we develop a dual graph convolutional network to jointly exploits local and global consistency for feature aggregation. Last, we utilize a domain classifier with an adversarial learning submodule to facilitate knowledge transfer between different domain graphs. Experimental results on a variety of publicly available datasets reveal the effectiveness of our \method{}.

cs.LG↗

arXiv2025

CoCo: A Coupled Contrastive Framework for Unsupervised Domain Adaptive Graph Classification

Although graph neural networks (GNNs) have achieved impressive achievements in graph classification, they often need abundant task-specific labels, which could be extensively costly to acquire. A credible solution is to explore additional labeled graphs to enhance unsupervised learning on the target domain. However, how to apply GNNs to domain adaptation remains unsolved owing to the insufficient exploration of graph topology and the significant domain discrepancy. In this paper, we propose Coupled Contrastive Graph Representation Learning (CoCo), which extracts the topological information from coupled learning branches and reduces the domain discrepancy with coupled contrastive learning. CoCo contains a graph convolutional network branch and a hierarchical graph kernel network branch, which explore graph topology in implicit and explicit manners. Besides, we incorporate coupled branches into a holistic multi-view contrastive learning framework, which not only incorporates graph representations learned from complementary views for enhanced understanding, but also encourages the similarity between cross-domain example pairs with the same semantics for domain alignment. Extensive experiments on popular datasets show that our CoCo outperforms these competing baselines in different settings generally.

cs.LG↗

arXiv2025

Dynamic Spiking Framework for Graph Neural Networks

The integration of Spiking Neural Networks (SNNs) and Graph Neural Networks (GNNs) is gradually attracting attention due to the low power consumption and high efficiency in processing the non-Euclidean data represented by graphs. However, as a common problem, dynamic graph representation learning faces challenges such as high complexity and large memory overheads. Current work often uses SNNs instead of Recurrent Neural Networks (RNNs) by using binary features instead of continuous ones for efficient training, which would overlooks graph structure information and leads to the loss of details during propagation. Additionally, optimizing dynamic spiking models typically requires propagation of information across time steps, which increases memory requirements. To address these challenges, we present a framework named \underline{Dy}namic \underline{S}p\underline{i}king \underline{G}raph \underline{N}eural Networks (\method{}). To mitigate the information loss problem, \method{} propagates early-layer information directly to the last layer for information compensation. To accommodate the memory requirements, we apply the implicit differentiation on the equilibrium state, which does not rely on the exact reverse of the forward computation. While traditional implicit differentiation methods are usually used for static situations, \method{} extends it to the dynamic graph setting. Extensive experiments on three large-scale real-world dynamic graph datasets validate the effectiveness of \method{} on dynamic node classification tasks with lower computational costs.

cs.NE↗

arXiv2025

UniMoT: Unified Molecule-Text Language Model with Discrete Token Representation

The remarkable success of Large Language Models (LLMs) across diverse tasks has driven the research community to extend their capabilities to molecular applications. However, most molecular LLMs employ adapter-based architectures that do not treat molecule and text modalities equally and lack a supervision signal for the molecule modality. To address these issues, we introduce UniMoT, a Unified Molecule-Text LLM adopting a tokenizer-based architecture that expands the vocabulary of LLM with molecule tokens. Specifically, we introduce a Vector Quantization-driven tokenizer that incorporates a Q-Former to bridge the modality gap between molecule and text. This tokenizer transforms molecules into sequences of molecule tokens with causal dependency, encapsulating high-level molecular and textual information. Equipped with this tokenizer, UniMoT can unify molecule and text modalities under a shared token representation and an autoregressive training paradigm, enabling it to interpret molecules as a foreign language and generate them as text. Following a four-stage training scheme, UniMoT emerges as a multi-modal generalist capable of performing both molecule-to-text and text-to-molecule tasks. Extensive experiments demonstrate that UniMoT achieves state-of-the-art performance across a wide range of molecule comprehension and generation tasks.

cs.CL↗

arXiv2025

LightSAM: Parameter-Agnostic Sharpness-Aware Minimization

Sharpness-Aware Minimization (SAM) optimizer enhances the generalization ability of the machine learning model by exploring the flat minima landscape through weight perturbations. Despite its empirical success, SAM introduces an additional hyper-parameter, the perturbation radius, which causes the sensitivity of SAM to it. Moreover, it has been proved that the perturbation radius and learning rate of SAM are constrained by problem-dependent parameters to guarantee convergence. These limitations indicate the requirement of parameter-tuning in practical applications. In this paper, we propose the algorithm LightSAM which sets the perturbation radius and learning rate of SAM adaptively, thus extending the application scope of SAM. LightSAM employs three popular adaptive optimizers, including AdaGrad-Norm, AdaGrad and Adam, to replace the SGD optimizer for weight perturbation and model updating, reducing sensitivity to parameters. Theoretical results show that under weak assumptions, LightSAM could converge ideally with any choices of perturbation radius and learning rate, thus achieving parameter-agnostic. We conduct preliminary experiments on several deep learning tasks, which together with the theoretical findings validate the the effectiveness of LightSAM.

cs.LG↗

arXiv2025

Cross-Attention Graph Neural Networks for Inferring Gene Regulatory Networks with Skewed Degree Distribution

Inferencing Gene Regulatory Networks (GRNs) from gene expression data is a pivotal challenge in systems biology, and several innovative computational methods have been introduced. However, most of these studies have not considered the skewed degree distribution of genes. Specifically, some genes may regulate multiple target genes while some genes may be regulated by multiple regulator genes. Such a skewed degree distribution issue significantly complicates the application of directed graph embedding methods. To tackle this issue, we propose the Cross-Attention Complex Dual Graph Embedding Model (XATGRN). Our XATGRN employs a cross-attention mechanism to effectively capture intricate gene interactions from gene expression profiles. Additionally, it uses a Dual Complex Graph Embedding approach to manage the skewed degree distribution, thereby ensuring precise prediction of regulatory relationships and their directionality. Our model consistently outperforms existing state-of-the-art methods across various datasets, underscoring its efficacy in elucidating complex gene regulatory mechanisms. Our codes used in this paper are publicly available at: https://github.com/kikixiong/XATGRN.

q-bio.QM↗

arXiv2024

CSformer: Combining Channel Independence and Mixing for Robust Multivariate Time Series Forecasting

In the domain of multivariate time series analysis, the concept of channel independence has been increasingly adopted, demonstrating excellent performance due to its ability to eliminate noise and the influence of irrelevant variables. However, such a concept often simplifies the complex interactions among channels, potentially leading to information loss. To address this challenge, we propose a strategy of channel independence followed by mixing. Based on this strategy, we introduce CSformer, a novel framework featuring a two-stage multiheaded self-attention mechanism. This mechanism is designed to extract and integrate both channel-specific and sequence-specific information. Distinctively, CSformer employs parameter sharing to enhance the cooperative effects between these two types of information. Moreover, our framework effectively incorporates sequence and channel adapters, significantly improving the model's ability to identify important information across various dimensions. Extensive experiments on several real-world datasets demonstrate that CSformer achieves state-of-the-art results in terms of overall performance.

cs.LG↗

arXiv2024

Beyond Scaleup: Knowledge-aware Parsimony Learning from Deep Networks

The brute-force scaleup of training datasets, learnable parameters and computation power, has become a prevalent strategy for developing more robust learning models. However, due to bottlenecks in data, computation, and trust, the sustainability of this strategy is a serious concern. In this paper, we attempt to address this issue in a parsimonious manner (i.e., achieving greater potential with simpler models). The key is to drive models using domain-specific knowledge, such as symbols, logic, and formulas, instead of purely relying on scaleup. This approach allows us to build a framework that uses this knowledge as "building blocks" to achieve parsimony in model design, training, and interpretation. Empirical results show that our methods surpass those that typically follow the scaling law. We also demonstrate our framework in AI for science, specifically in the problem of drug-drug interaction prediction. We hope our research can foster more diverse technical roadmaps in the era of foundation models.

cs.LG↗

arXiv2024

Relieving Universal Label Noise for Unsupervised Visible-Infrared Person Re-Identification by Inferring from Neighbors

Unsupervised visible-infrared person re-identification (USL-VI-ReID) is of great research and practical significance yet remains challenging due to the absence of annotations. Existing approaches aim to learn modality-invariant representations in an unsupervised setting. However, these methods often encounter label noise within and across modalities due to suboptimal clustering results and considerable modality discrepancies, which impedes effective training. To address these challenges, we propose a straightforward yet effective solution for USL-VI-ReID by mitigating universal label noise using neighbor information. Specifically, we introduce the Neighbor-guided Universal Label Calibration (N-ULC) module, which replaces explicit hard pseudo labels in both homogeneous and heterogeneous spaces with soft labels derived from neighboring samples to reduce label noise. Additionally, we present the Neighbor-guided Dynamic Weighting (N-DW) module to enhance training stability by minimizing the influence of unreliable samples. Extensive experiments on the RegDB and SYSU-MM01 datasets demonstrate that our method outperforms existing USL-VI-ReID approaches, despite its simplicity. The source code is available at: https://github.com/tengxiao14/Neighbor-guided-USL-VI-ReID.

cs.CV↗

arXiv2024

Graph Structure Learning with Bi-level Optimization

Currently, most Graph Structure Learning (GSL) methods, as a means of learning graph structure, improve the robustness of GNN merely from a local view by considering the local information related to each edge and indiscriminately applying the mechanism across edges, which may suffer from the local structure heterogeneity of the graph (\ie the uneven distribution of inter-class connections over nodes). To overcome the cons, we extract the graph structure as a learnable parameter and jointly learn the structure and common parameters of GNN from the global view. Excitingly, the common parameters contain the global information for nodes features mapping, which is also crucial for structure optimization (\ie optimizing the structure relies on global mapping information). Mathematically, we apply a generic structure extractor to abstract the graph structure and transform GNNs in the form of learning structure and common parameters. Then, we model the learning process as a novel bi-level optimization, \ie \textit{Generic Structure Extraction with Bi-level Optimization for Graph Structure Learning (GSEBO)}, which optimizes GNN parameters in the upper level to obtain the global mapping information and graph structure is optimized in the lower level with the global information learned from the upper level. We instantiate the proposed GSEBO on classical GNNs and compare it with the state-of-the-art GSL methods. Extensive experiments validate the effectiveness of the proposed GSEBO on four real-world datasets.

cs.LG↗

arXiv2024

A Survey of Stance Detection on Social Media: New Directions and Perspectives

In modern digital environments, users frequently express opinions on contentious topics, providing a wealth of information on prevailing attitudes. The systematic analysis of these opinions offers valuable insights for decision-making in various sectors, including marketing and politics. As a result, stance detection has emerged as a crucial subfield within affective computing, enabling the automatic detection of user stances in social media conversations and providing a nuanced understanding of public sentiment on complex issues. Recent years have seen a surge of research interest in developing effective stance detection methods, with contributions from multiple communities, including natural language processing, web science, and social computing. This paper provides a comprehensive survey of stance detection techniques on social media, covering task definitions, datasets, approaches, and future works. We review traditional stance detection models, as well as state-of-the-art methods based on large language models, and discuss their strengths and limitations. Our survey highlights the importance of stance detection in understanding public opinion and sentiment, and identifies gaps in current research. We conclude by outlining potential future directions for stance detection on social media, including the need for more robust and generalizable models, and the importance of addressing emerging challenges such as multi-modal stance detection and stance detection in low-resource languages.

cs.CL↗

arXiv2024

GraphCL: Graph-based Clustering for Semi-Supervised Medical Image Segmentation

Semi-supervised learning (SSL) has made notable advancements in medical image segmentation (MIS), particularly in scenarios with limited labeled data and significantly enhancing data utilization efficiency. Previous methods primarily focus on complex training strategies to utilize unlabeled data but neglect the importance of graph structural information. Different from existing methods, we propose a graph-based clustering for semi-supervised medical image segmentation (GraphCL) by jointly modeling graph data structure in a unified deep model. The proposed GraphCL model enjoys several advantages. Firstly, to the best of our knowledge, this is the first work to model the data structure information for semi-supervised medical image segmentation (SSMIS). Secondly, to get the clustered features across different graphs, we integrate both pairwise affinities between local image features and raw features as inputs. Extensive experimental results on three standard benchmarks show that the proposed GraphCL algorithm outperforms state-of-the-art semi-supervised medical image segmentation methods.

cs.CV↗

arXiv2024

AGLP: A Graph Learning Perspective for Semi-supervised Domain Adaptation

In semi-supervised domain adaptation (SSDA), the model aims to leverage partially labeled target domain data along with a large amount of labeled source domain data to enhance its generalization capability for the target domain. A key advantage of SSDA is its ability to significantly reduce reliance on labeled data, thereby lowering the costs and time associated with data preparation. Most existing SSDA methods utilize information from domain labels and class labels but overlook the structural information of the data. To address this issue, this paper proposes a graph learning perspective (AGLP) for semi-supervised domain adaptation. We apply the graph convolutional network to the instance graph which allows structural information to propagate along the weighted graph edges. The proposed AGLP model has several advantages. First, to the best of our knowledge, this is the first work to model structural information in SSDA. Second, the proposed model can effectively learn domain-invariant and semantic representations, reducing domain discrepancies in SSDA. Extensive experimental results on multiple standard benchmarks demonstrate that the proposed AGLP algorithm outperforms state-of-the-art semi-supervised domain adaptation methods.

cs.CV↗

arXiv2024

DiM: $f$-Divergence Minimization Guided Sharpness-Aware Optimization for Semi-supervised Medical Image Segmentation

As a technique to alleviate the pressure of data annotation, semi-supervised learning (SSL) has attracted widespread attention. In the specific domain of medical image segmentation, semi-supervised methods (SSMIS) have become a research hotspot due to their ability to reduce the need for large amounts of precisely annotated data. SSMIS focuses on enhancing the model's generalization performance by leveraging a small number of labeled samples and a large number of unlabeled samples. The latest sharpness-aware optimization (SAM) technique, which optimizes the model by reducing the sharpness of the loss function, has shown significant success in SSMIS. However, SAM and its variants may not fully account for the distribution differences between different datasets. To address this issue, we propose a sharpness-aware optimization method based on $f$-divergence minimization (DiM) for semi-supervised medical image segmentation. This method enhances the model's stability by fine-tuning the sensitivity of model parameters and improves the model's adaptability to different datasets through the introduction of $f$-divergence. By reducing $f$-divergence, the DiM method not only improves the performance balance between the source and target datasets but also prevents performance degradation due to overfitting on the source dataset.

cs.CV↗

arXiv2024

Investigating Chain-of-thought with ChatGPT for Stance Detection on Social Media

Stance detection predicts attitudes towards targets in texts and has gained attention with the rise of social media. Traditional approaches include conventional machine learning, early deep neural networks, and pre-trained fine-tuning models. However, with the evolution of very large pre-trained language models (VLPLMs) like ChatGPT (GPT-3.5), traditional methods face deployment challenges. The parameter-free Chain-of-Thought (CoT) approach, not requiring backpropagation training, has emerged as a promising alternative. This paper examines CoT's effectiveness in stance detection tasks, demonstrating its superior accuracy and discussing associated challenges.

cs.CL↗