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Naoufel Werghi

Publications and source records attributed to Naoufel Werghi.

At least 37 records · Page 2Linked to original sources

Multi-Resolution Pathology-Language Pre-training Model with Text-Guided Visual Representation

In Computational Pathology (CPath), the introduction of Vision-Language Models (VLMs) has opened new avenues for research, focusing primarily on aligning image-text pairs at a single magnification level. However, this approach might not be sufficient for tasks like cancer subtype classification, tissue phenotyping, and survival analysis due to the limited level of detail that a single-resolution image can provide. Addressing this, we propose a novel multi-resolution paradigm leveraging Whole Slide Images (WSIs) to extract histology patches at multiple resolutions and generate corresponding textual descriptions through advanced CPath VLM. We introduce visual-textual alignment at multiple resolutions as well as cross-resolution alignment to establish more effective text-guided visual representations. Cross-resolution alignment using a multimodal encoder enhances the model's ability to capture context from multiple resolutions in histology images. Our model aims to capture a broader range of information, supported by novel loss functions, enriches feature representation, improves discriminative ability, and enhances generalization across different resolutions. Pre-trained on a comprehensive TCGA dataset with 34 million image-language pairs at various resolutions, our fine-tuned model outperforms state-of-the-art (SOTA) counterparts across multiple datasets and tasks, demonstrating its effectiveness in CPath. The code is available on GitHub at: https://github.com/BasitAlawode/MR-PLIP

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DyCON: Dynamic Uncertainty-aware Consistency and Contrastive Learning for Semi-supervised Medical Image Segmentation

Semi-supervised learning in medical image segmentation leverages unlabeled data to reduce annotation burdens through consistency learning. However, current methods struggle with class imbalance and high uncertainty from pathology variations, leading to inaccurate segmentation in 3D medical images. To address these challenges, we present DyCON, a Dynamic Uncertainty-aware Consistency and Contrastive Learning framework that enhances the generalization of consistency methods with two complementary losses: Uncertainty-aware Consistency Loss (UnCL) and Focal Entropy-aware Contrastive Loss (FeCL). UnCL enforces global consistency by dynamically weighting the contribution of each voxel to the consistency loss based on its uncertainty, preserving high-uncertainty regions instead of filtering them out. Initially, UnCL prioritizes learning from uncertain voxels with lower penalties, encouraging the model to explore challenging regions. As training progress, the penalty shift towards confident voxels to refine predictions and ensure global consistency. Meanwhile, FeCL enhances local feature discrimination in imbalanced regions by introducing dual focal mechanisms and adaptive confidence adjustments into the contrastive principle. These mechanisms jointly prioritizes hard positives and negatives while focusing on uncertain sample pairs, effectively capturing subtle lesion variations under class imbalance. Extensive evaluations on four diverse medical image segmentation datasets (ISLES'22, BraTS'19, LA, Pancreas) show DyCON's superior performance against SOTA methods.

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STING-BEE: Towards Vision-Language Model for Real-World X-ray Baggage Security Inspection

Advancements in Computer-Aided Screening (CAS) systems are essential for improving the detection of security threats in X-ray baggage scans. However, current datasets are limited in representing real-world, sophisticated threats and concealment tactics, and existing approaches are constrained by a closed-set paradigm with predefined labels. To address these challenges, we introduce STCray, the first multimodal X-ray baggage security dataset, comprising 46,642 image-caption paired scans across 21 threat categories, generated using an X-ray scanner for airport security. STCray is meticulously developed with our specialized protocol that ensures domain-aware, coherent captions, that lead to the multi-modal instruction following data in X-ray baggage security. This allows us to train a domain-aware visual AI assistant named STING-BEE that supports a range of vision-language tasks, including scene comprehension, referring threat localization, visual grounding, and visual question answering (VQA), establishing novel baselines for multi-modal learning in X-ray baggage security. Further, STING-BEE shows state-of-the-art generalization in cross-domain settings. Code, data, and models are available at https://divs1159.github.io/STING-BEE/.

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AquaticCLIP: A Vision-Language Foundation Model for Underwater Scene Analysis

The preservation of aquatic biodiversity is critical in mitigating the effects of climate change. Aquatic scene understanding plays a pivotal role in aiding marine scientists in their decision-making processes. In this paper, we introduce AquaticCLIP, a novel contrastive language-image pre-training model tailored for aquatic scene understanding. AquaticCLIP presents a new unsupervised learning framework that aligns images and texts in aquatic environments, enabling tasks such as segmentation, classification, detection, and object counting. By leveraging our large-scale underwater image-text paired dataset without the need for ground-truth annotations, our model enriches existing vision-language models in the aquatic domain. For this purpose, we construct a 2 million underwater image-text paired dataset using heterogeneous resources, including YouTube, Netflix, NatGeo, etc. To fine-tune AquaticCLIP, we propose a prompt-guided vision encoder that progressively aggregates patch features via learnable prompts, while a vision-guided mechanism enhances the language encoder by incorporating visual context. The model is optimized through a contrastive pretraining loss to align visual and textual modalities. AquaticCLIP achieves notable performance improvements in zero-shot settings across multiple underwater computer vision tasks, outperforming existing methods in both robustness and interpretability. Our model sets a new benchmark for vision-language applications in underwater environments. The code and dataset for AquaticCLIP are publicly available on GitHub at xxx.

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Multi-Modal Attention Networks for Enhanced Segmentation and Depth Estimation of Subsurface Defects in Pulse Thermography

AI-driven pulse thermography (PT) has become a crucial tool in non-destructive testing (NDT), enabling automatic detection of hidden anomalies in various industrial components. Current state-of-the-art techniques feed segmentation and depth estimation networks compressed PT sequences using either Principal Component Analysis (PCA) or Thermographic Signal Reconstruction (TSR). However, treating these two modalities independently constrains the performance of PT inspection models as these representations possess complementary semantic features. To address this limitation, this work proposes PT-Fusion, a multi-modal attention-based fusion network that fuses both PCA and TSR modalities for defect segmentation and depth estimation of subsurface defects in PT setups. PT-Fusion introduces novel feature fusion modules, Encoder Attention Fusion Gate (EAFG) and Attention Enhanced Decoding Block (AEDB), to fuse PCA and TSR features for enhanced segmentation and depth estimation of subsurface defects. In addition, a novel data augmentation technique is proposed based on random data sampling from thermographic sequences to alleviate the scarcity of PT datasets. The proposed method is benchmarked against state-of-the-art PT inspection models, including U-Net, attention U-Net, and 3D-CNN on the Université Laval IRT-PVC dataset. The results demonstrate that PT-Fusion outperforms the aforementioned models in defect segmentation and depth estimation accuracies with a margin of 10%.

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BENet: A Cross-domain Robust Network for Detecting Face Forgeries via Bias Expansion and Latent-space Attention

In response to the growing threat of deepfake technology, we introduce BENet, a Cross-Domain Robust Bias Expansion Network. BENet enhances the detection of fake faces by addressing limitations in current detectors related to variations across different types of fake face generation techniques, where ``cross-domain" refers to the diverse range of these deepfakes, each considered a separate domain. BENet's core feature is a bias expansion module based on autoencoders. This module maintains genuine facial features while enhancing differences in fake reconstructions, creating a reliable bias for detecting fake faces across various deepfake domains. We also introduce a Latent-Space Attention (LSA) module to capture inconsistencies related to fake faces at different scales, ensuring robust defense against advanced deepfake techniques. The enriched LSA feature maps are multiplied with the expanded bias to create a versatile feature space optimized for subtle forgeries detection. To improve its ability to detect fake faces from unknown sources, BENet integrates a cross-domain detector module that enhances recognition accuracy by verifying the facial domain during inference. We train our network end-to-end with a novel bias expansion loss, adopted for the first time, in face forgery detection. Extensive experiments covering both intra and cross-dataset demonstrate BENet's superiority over current state-of-the-art solutions.

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Reconstructing Deep Neural Networks: Unleashing the Optimization Potential of Natural Gradient Descent

Natural gradient descent (NGD) is a powerful optimization technique for machine learning, but the computational complexity of the inverse Fisher information matrix limits its application in training deep neural networks. To overcome this challenge, we propose a novel optimization method for training deep neural networks called structured natural gradient descent (SNGD). Theoretically, we demonstrate that optimizing the original network using NGD is equivalent to using fast gradient descent (GD) to optimize the reconstructed network with a structural transformation of the parameter matrix. Thereby, we decompose the calculation of the global Fisher information matrix into the efficient computation of local Fisher matrices via constructing local Fisher layers in the reconstructed network to speed up the training. Experimental results on various deep networks and datasets demonstrate that SNGD achieves faster convergence speed than NGD while retaining comparable solutions. Furthermore, our method outperforms traditional GDs in terms of efficiency and effectiveness. Thus, our proposed method has the potential to significantly improve the scalability and efficiency of NGD in deep learning applications. Our source code is available at https://github.com/Chaochao-Lin/SNGD.

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Advancing Histopathology with Deep Learning Under Data Scarcity: A Decade in Review

Recent years witnessed remarkable progress in computational histopathology, largely fueled by deep learning. This brought the clinical adoption of deep learning-based tools within reach, promising significant benefits to healthcare, offering a valuable second opinion on diagnoses, streamlining complex tasks, and mitigating the risks of inconsistency and bias in clinical decisions. However, a well-known challenge is that deep learning models may contain up to billions of parameters; supervising their training effectively would require vast labeled datasets to achieve reliable generalization and noise resilience. In medical imaging, particularly histopathology, amassing such extensive labeled data collections places additional demands on clinicians and incurs higher costs, which hinders the art's progress. Addressing this challenge, researchers devised various strategies for leveraging deep learning with limited data and annotation availability. In this paper, we present a comprehensive review of deep learning applications in histopathology, with a focus on the challenges posed by data scarcity over the past decade. We systematically categorize and compare various approaches, evaluate their distinct contributions using benchmarking tables, and highlight their respective advantages and limitations. Additionally, we address gaps in existing reviews and identify underexplored research opportunities, underscoring the potential for future advancements in this field.

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Video Anomaly Detection in 10 Years: A Survey and Outlook

Video anomaly detection (VAD) holds immense importance across diverse domains such as surveillance, healthcare, and environmental monitoring. While numerous surveys focus on conventional VAD methods, they often lack depth in exploring specific approaches and emerging trends. This survey explores deep learning-based VAD, expanding beyond traditional supervised training paradigms to encompass emerging weakly supervised, self-supervised, and unsupervised approaches. A prominent feature of this review is the investigation of core challenges within the VAD paradigms including large-scale datasets, features extraction, learning methods, loss functions, regularization, and anomaly score prediction. Moreover, this review also investigates the vision language models (VLMs) as potent feature extractors for VAD. VLMs integrate visual data with textual descriptions or spoken language from videos, enabling a nuanced understanding of scenes crucial for anomaly detection. By addressing these challenges and proposing future research directions, this review aims to foster the development of robust and efficient VAD systems leveraging the capabilities of VLMs for enhanced anomaly detection in complex real-world scenarios. This comprehensive analysis seeks to bridge existing knowledge gaps, provide researchers with valuable insights, and contribute to shaping the future of VAD research.

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CPLIP: Zero-Shot Learning for Histopathology with Comprehensive Vision-Language Alignment

This paper proposes Comprehensive Pathology Language Image Pre-training (CPLIP), a new unsupervised technique designed to enhance the alignment of images and text in histopathology for tasks such as classification and segmentation. This methodology enriches vision-language models by leveraging extensive data without needing ground truth annotations. CPLIP involves constructing a pathology-specific dictionary, generating textual descriptions for images using language models, and retrieving relevant images for each text snippet via a pre-trained model. The model is then fine-tuned using a many-to-many contrastive learning method to align complex interrelated concepts across both modalities. Evaluated across multiple histopathology tasks, CPLIP shows notable improvements in zero-shot learning scenarios, outperforming existing methods in both interpretability and robustness and setting a higher benchmark for the application of vision-language models in the field. To encourage further research and replication, the code for CPLIP is available on GitHub at https://cplip.github.io/

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Tomato Maturity Recognition with Convolutional Transformers

Tomatoes are a major crop worldwide, and accurately classifying their maturity is important for many agricultural applications, such as harvesting, grading, and quality control. In this paper, the authors propose a novel method for tomato maturity classification using a convolutional transformer. The convolutional transformer is a hybrid architecture that combines the strengths of convolutional neural networks (CNNs) and transformers. Additionally, this study introduces a new tomato dataset named KUTomaData, explicitly designed to train deep-learning models for tomato segmentation and classification. KUTomaData is a compilation of images sourced from a greenhouse in the UAE, with approximately 700 images available for training and testing. The dataset is prepared under various lighting conditions and viewing perspectives and employs different mobile camera sensors, distinguishing it from existing datasets. The contributions of this paper are threefold:Firstly, the authors propose a novel method for tomato maturity classification using a modular convolutional transformer. Secondly, the authors introduce a new tomato image dataset that contains images of tomatoes at different maturity levels. Lastly, the authors show that the convolutional transformer outperforms state-of-the-art methods for tomato maturity classification. The effectiveness of the proposed framework in handling cluttered and occluded tomato instances was evaluated using two additional public datasets, Laboro Tomato and Rob2Pheno Annotated Tomato, as benchmarks. The evaluation results across these three datasets demonstrate the exceptional performance of our proposed framework, surpassing the state-of-the-art by 58.14%, 65.42%, and 66.39% in terms of mean average precision scores for KUTomaData, Laboro Tomato, and Rob2Pheno Annotated Tomato, respectively.

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A Comprehensive Review of Artificial Intelligence Applications in Major Retinal Conditions

This paper provides a systematic survey of retinal diseases that cause visual impairments or blindness, emphasizing the importance of early detection for effective treatment. It covers both clinical and automated approaches for detecting retinal disease, focusing on studies from the past decade. The survey evaluates various algorithms for identifying structural abnormalities and diagnosing retinal diseases, and it identifies future research directions based on a critical analysis of existing literature. This comprehensive study, which reviews both clinical and automated detection methods using different modalities, appears to be unique in its scope. Additionally, the survey serves as a helpful guide for researchers interested in digital retinopathy.

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3D-TexSeg: Unsupervised Segmentation of 3D Texture using Mutual Transformer Learning

Analysis of the 3D Texture is indispensable for various tasks, such as retrieval, segmentation, classification, and inspection of sculptures, knitted fabrics, and biological tissues. A 3D texture is a locally repeated surface variation independent of the surface's overall shape and can be determined using the local neighborhood and its characteristics. Existing techniques typically employ computer vision techniques that analyze a 3D mesh globally, derive features, and then utilize the obtained features for retrieval or classification. Several traditional and learning-based methods exist in the literature, however, only a few are on 3D texture, and nothing yet, to the best of our knowledge, on the unsupervised schemes. This paper presents an original framework for the unsupervised segmentation of the 3D texture on the mesh manifold. We approach this problem as binary surface segmentation, partitioning the mesh surface into textured and non-textured regions without prior annotation. We devise a mutual transformer-based system comprising a label generator and a cleaner. The two models take geometric image representations of the surface mesh facets and label them as texture or non-texture across an iterative mutual learning scheme. Extensive experiments on three publicly available datasets with diverse texture patterns demonstrate that the proposed framework outperforms standard and SOTA unsupervised techniques and competes reasonably with supervised methods.

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A Robust Adversary Detection-Deactivation Method for Metaverse-oriented Collaborative Deep Learning

Metaverse is trending to create a digital circumstance that can transfer the real world to an online platform supported by large quantities of real-time interactions. Pre-trained Artificial Intelligence (AI) models are demonstrating their increasing capability in aiding the metaverse to achieve an excellent response with negligible delay, and nowadays, many large models are collaboratively trained by various participants in a manner named collaborative deep learning (CDL). However, several security weaknesses can threaten the safety of the CDL training process, which might result in fatal attacks to either the pre-trained large model or the local sensitive data sets possessed by an individual entity. In CDL, malicious participants can hide within the major innocent and silently uploads deceptive parameters to degenerate the model performance, or they can abuse the downloaded parameters to construct a Generative Adversarial Network (GAN) to acquire the private information of others illegally. To compensate for these vulnerabilities, this paper proposes an adversary detection-deactivation method, which can limit and isolate the access of potential malicious participants, quarantine and disable the GAN-attack or harmful backpropagation of received threatening gradients. A detailed protection analysis has been conducted on a Multiview CDL case, and results show that the protocol can effectively prevent harmful access by heuristic manner analysis and can protect the existing model by swiftly checking received gradients using only one low-cost branch with an embedded firewall.

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Improving Underwater Visual Tracking With a Large Scale Dataset and Image Enhancement

This paper presents a new dataset and general tracker enhancement method for Underwater Visual Object Tracking (UVOT). Despite its significance, underwater tracking has remained unexplored due to data inaccessibility. It poses distinct challenges; the underwater environment exhibits non-uniform lighting conditions, low visibility, lack of sharpness, low contrast, camouflage, and reflections from suspended particles. Performance of traditional tracking methods designed primarily for terrestrial or open-air scenarios drops in such conditions. We address the problem by proposing a novel underwater image enhancement algorithm designed specifically to boost tracking quality. The method has resulted in a significant performance improvement, of up to 5.0% AUC, of state-of-the-art (SOTA) visual trackers. To develop robust and accurate UVOT methods, large-scale datasets are required. To this end, we introduce a large-scale UVOT benchmark dataset consisting of 400 video segments and 275,000 manually annotated frames enabling underwater training and evaluation of deep trackers. The videos are labelled with several underwater-specific tracking attributes including watercolor variation, target distractors, camouflage, target relative size, and low visibility conditions. The UVOT400 dataset, tracking results, and the code are publicly available on: https://github.com/BasitAlawode/UWVOT400.

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EFaR 2023: Efficient Face Recognition Competition

This paper presents the summary of the Efficient Face Recognition Competition (EFaR) held at the 2023 International Joint Conference on Biometrics (IJCB 2023). The competition received 17 submissions from 6 different teams. To drive further development of efficient face recognition models, the submitted solutions are ranked based on a weighted score of the achieved verification accuracies on a diverse set of benchmarks, as well as the deployability given by the number of floating-point operations and model size. The evaluation of submissions is extended to bias, cross-quality, and large-scale recognition benchmarks. Overall, the paper gives an overview of the achieved performance values of the submitted solutions as well as a diverse set of baselines. The submitted solutions use small, efficient network architectures to reduce the computational cost, some solutions apply model quantization. An outlook on possible techniques that are underrepresented in current solutions is given as well.

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Unsupervised Mutual Transformer Learning for Multi-Gigapixel Whole Slide Image Classification

Classification of gigapixel Whole Slide Images (WSIs) is an important prediction task in the emerging area of computational pathology. There has been a surge of research in deep learning models for WSI classification with clinical applications such as cancer detection or prediction of molecular mutations from WSIs. Most methods require expensive and labor-intensive manual annotations by expert pathologists. Weakly supervised Multiple Instance Learning (MIL) methods have recently demonstrated excellent performance; however, they still require large slide-level labeled training datasets that need a careful inspection of each slide by an expert pathologist. In this work, we propose a fully unsupervised WSI classification algorithm based on mutual transformer learning. Instances from gigapixel WSI (i.e., image patches) are transformed into a latent space and then inverse-transformed to the original space. Using the transformation loss, pseudo-labels are generated and cleaned using a transformer label-cleaner. The proposed transformer-based pseudo-label generation and cleaning modules mutually train each other iteratively in an unsupervised manner. A discriminative learning mechanism is introduced to improve normal versus cancerous instance labeling. In addition to unsupervised classification, we demonstrate the effectiveness of the proposed framework for weak supervision for cancer subtype classification as downstream analysis. Extensive experiments on four publicly available datasets show excellent performance compared to the state-of-the-art methods. We intend to make the source code of our algorithm publicly available soon.

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Speaker Identification from emotional and noisy speech data using learned voice segregation and Speech VGG

Speech signals are subjected to more acoustic interference and emotional factors than other signals. Noisy emotion-riddled speech data is a challenge for real-time speech processing applications. It is essential to find an effective way to segregate the dominant signal from other external influences. An ideal system should have the capacity to accurately recognize required auditory events from a complex scene taken in an unfavorable situation. This paper proposes a novel approach to speaker identification in unfavorable conditions such as emotion and interference using a pre-trained Deep Neural Network mask and speech VGG. The proposed model obtained superior performance over the recent literature in English and Arabic emotional speech data and reported an average speaker identification rate of 85.2\%, 87.0\%, and 86.6\% using the Ryerson audio-visual dataset (RAVDESS), speech under simulated and actual stress (SUSAS) dataset and Emirati-accented Speech dataset (ESD) respectively.

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