arXiv subjects

Natalia Ivanova

Publications and source records attributed to Natalia Ivanova.

At least 19 recordsLinked to original sources

arXiv2026

NATA: a chemical-picture equation of state for stellar merger hydrodynamics

We present NATA (Nearly Always Truthful Approximations), a self-contained chemical-picture equation of state for hydrogen-helium-carbon-oxygen mixtures, developed for hydrodynamics calculations of stellar mergers and common envelope evolution. NATA carries bound species explicitly in ionisation and dissociation equilibrium and evaluates pressure, internal energy, and entropy from one continuous, single-physics chemical-picture solve built on analytic and semi-analytic component physics, rather than by stitching together component EOS tables. The result is smooth thermodynamics across ionisation, dissociation, and degeneracy fronts, with monotonic internal energy and no artificial energy steps at EOS seams, so the EOS inverts cleanly for codes that advance internal energy. We benchmark NATA against the blended MESA EOS, ab initio hydrogen-helium tables, and reference-independent analytic limits. NATA reproduces clean analytic limits and selected fully ionised benchmarks at the sub-percent level, while most remaining percent-level residuals are confined to partial-ionisation and dissociation fronts; these residuals are traced to identifiable picture choices, front placements, and reference-table seams or extrapolations. NATA therefore provides a well-behaved fallback in cool, low-density regimes where blended EOS tables may be stretched beyond their intended use and become physically unreliable.

astro-ph.SR↗

arXiv2026

Revisiting atmospheric Roche lobe overflow in symbiotic binaries

Classical binary evolution models predict dynamically unstable mass transfer in symbiotic stars with high mass ratios, leading to a common envelope. However, many observed S-type symbiotic systems show long-lived interaction, suggesting that an additional stabilizing mechanism may be at work. We investigate whether atmospheric Roche-lobe overflow can prolong the mass-transfer phase and help reconcile theory with observations. We implement the Rapid Unified Mass Transfer framework in \texttt{MESA} and compute a grid of white-dwarf--giant binaries covering a wide range of donor masses, mass ratios, and orbital periods. We then compare the resulting lifetimes and evolutionary tracks with well-constrained Galactic S-type symbiotic systems. For convective giant donors, our models recover stable mass transfer up to $q \simeq 1.5$, while atmospheric overflow strongly extends the symbiotic phase. RGB and early-AGB systems with $q \lesssim 1.5$ can remain interacting for up to $10^6$ yr at $\dot{M} \gtrsim 10^{-9},M_{\odot},{\rm yr}^{-1}$, much longer than the commonly assumed $\sim 10^3$ yr pre-common-envelope lifetime. In these systems, the orbit shrinks mildly and may re-expand after mass-ratio reversal. Systems with higher mass ratios still evolve toward a common envelope, but even for $q \simeq 2$--$4$ the symbiotic phase can last $10^4$--$10^5$ yr. The synthetic distribution in the orbital-period--mass-ratio plane and individual evolutionary tracks are broadly consistent with observed S-type symbiotic binaries, including recurrent novae. The RUMT framework, which incorporates atmospheric RLOF, provides an explanation for the long-term stability of many symbiotic binaries and may account for their high observed occurrence rate.

astro-ph.SR↗

arXiv2026

Kinematics of Wolf-Rayet Stars in the LMC: Clues to Subtype Origins

We measure transverse proper motion velocities of LMC Wolf-Rayet (WR) stars using Gaia DR3 astrometry. The combined velocity distribution of WNh, O If*/WN, and WNL very massive stars ($>100\ M_\odot$; VMS) shows both slow, unejected objects ($v_\perp < 10$ $\rm km\ s^{-1}$) and stars dominated by fast, runaway velocities ($v_\perp > 24$ $\rm km\ s^{-1}$). This supports expectations that VMS ages are comparable to the dynamical ejection timescale ($\sim1.5$ Myr). These kinematics share similarities with those of lower-luminosity, classical WNh, O If*/WN, and WNL stars, as well as the SMC field OB stars, suggesting that dynamical ejections may also dominate these populations. In contrast, both single and binary WNE stars are ejected populations that show single-peaked velocity distributions, suggesting a different ejection mechanism(s). We speculate that single WNE stars might result from explosive mergers onto the shell-burning layer, thereby stripping the H envelope. Binary WC stars appear to be faster (median $v_\perp = 54$ $\rm km\ s^{-1}$) and have higher luminosities than singles (median $v_\perp = 38$ $\rm km\ s^{-1}$), suggesting that single WC stars are not descendants of the binaries. Thus, the binaries are probably stripped by mass transfer, while the WC singles likely originate from another process. The high velocities of binary WC stars are consistent with some predictions that lower mass clusters generate fast dynamical ejections. Single WC and WN3/O3 stars have ambiguous kinematics, but both show high $v_\perp$ (median $\sim 38$ $\rm km\ s^{-1}$), possibly linked to their lower masses.

astro-ph.SR↗

arXiv2026

MIOFlow 2.0: A unified framework for inferring cellular stochastic dynamics from single cell and spatial transcriptomics data

Understanding cellular trajectories via time-resolved single-cell transcriptomics is vital for studying development, regeneration, and disease. A key challenge is inferring continuous trajectories from discrete snapshots. Biological complexity stems from stochastic cell fate decisions, temporal proliferation changes, and spatial environmental influences. Current methods often use deterministic interpolations treating cells in isolation, failing to capture the probabilistic branching, population shifts, and niche-dependent signaling driving real biological processes. We introduce Manifold Interpolating Optimal-Transport Flow (MIOFlow) 2.0. This framework learns biologically informed cellular trajectories by integrating manifold learning, optimal transport, and neural differential equations. It models three core processes: (1) stochasticity and branching via Neural Stochastic Differential Equations; (2) non-conservative population changes using a learned growth-rate model initialized with unbalanced optimal transport; and (3) environmental influence through a joint latent space unifying gene expression with spatial features like local cell type composition and signaling. By operating in a PHATE-distance matching autoencoder latent space, MIOFlow 2.0 ensures trajectories respect the data's intrinsic geometry. Empirical comparisons show expressive trajectory learning via neural differential equations outperforms existing generative models, including simulation-free flow matching. Validated on synthetic datasets, embryoid body differentiation, and spatially resolved axolotl brain regeneration, MIOFlow 2.0 improves trajectory accuracy and reveals hidden drivers of cellular transitions, like specific signaling niches. MIOFlow 2.0 thus bridges single-cell and spatial transcriptomics to uncover tissue-scale trajectories.

cs.LG↗

arXiv2024

Simulating a stellar contact binary merger -- II. Obtaining a light curve

Luminous Red Novae (LRNe) are enigmatic transient events distinguished by a rapid rise in luminosity, a plateau in luminosity, and spectra which become redder with time. The best-observed system before, during, and after the outburst is V1309 Sco. We model a candidate V1309 Sco progenitor binary configuration (1.52+0.16Msun) using the Smoothed Particle Hydrodynamics (SPH) code StarSmasher with a modified energy equation that implements flux-limited emission-diffusion radiative transport in a Lagrangian case. We developed an imaging technique allowing us to capture the flux an observer would measure. In this novel method, the outgoing radiative flux of each SPH particle in the observer's direction is attenuated by other particles along the path to the observer. We investigated how the light curve is affected in various models: with and without dust formation; constant, Planck, or Rosseland mean opacities; different donor star sizes; different companion star masses and types; radiative heating included in our modified energy equation; and different SPH simulation resolutions. The resulting evolution in bolometric luminosity and spectrum peak temperature is in good agreement with V1309 Sco observations. Our simulations rule out V1309 Sco models that do not assume dust formation.

astro-ph.SR↗

arXiv2024

Unified Rapid Mass Transfer

We present a method to obtain rapid mass loss rates in binary systems, specifically at the onset of MT episodes. The method unifies atmospheric (underflow) and $L_1$ stream (overflow) mass rates in a single continuous procedure. The method uses averaged 3D properties of the binaries, such as effective binary potential and effective binary acceleration, to both evolve the donor and obtain properties of the matter at the $L_1$ plane. In the case of underflow, we obtain atmospheric stratification. Our method can be used for binaries with an extensive range of mass ratios, $0.01 \le q \le 100$, and can also be applied to hot donors. The considered examples show that the MT rates obtained with this revised formalism always differ from the optically thin and optically thick MT rates widely used during the computations of binary evolution.

astro-ph.SR↗

arXiv2024

Bridging the gap between luminous red novae and common envelope evolution: the role of recombination energy and radiation force

Luminous red novae (LRNe) and their connection to common envelope evolution (CEE) remain elusive in astrophysics. Here, we present a radiation hydrodynamic model capable of simulating the light curves of material ejected during a CEE. For the first time, the radiation hydrodynamic model incorporates complete recombination physics for hydrogen and helium. The radiation hydrodynamic equations are solved with Guangqi. With time-independent ejecta simulations, we show that the peaks in the light curves are attributed to radiation-dominated ejecta, while the extended plateaus are produced by matter-dominated ejecta. To showcase our model's capability, we fit the light curve of AT2019zhd. The central mass object of $6M_{\odot}$ is assumed based on observations and scaling relations. Our model demonstrates that the ejecta mass of AT2019zhd falls within the range of $0.04M_{\odot}$ to $0.1M_{\odot}$. Additionally, we demonstrate that recombination energy and radiation force acceleration significantly impact the light curves, whereas dust formation has a limited effect during the peak and plateau phases.

astro-ph.SR↗

arXiv2023

Properties of binary systems in a one-dimensional approximation

Evolutionary calculations for stars in close binary systems are in high demand to obtain better constraints on gravitational wave source progenitors, understand transient events from stellar interactions, and more. Modern one-dimensional stellar codes make use of the Roche lobe radius $R_{\rm L}$ concept in order to treat stars in binary systems. If the stellar companion is approaching its $R_{\rm L}$, mass transfer treatment is initiated. However, the effective acceleration also affects the evolution of a star in a close binary system. This is different from the gravity inside a single star, whether that single star is rotating or not. Here, we present numerically obtained tables of properties of stars in a binary system as a function of the effective potential: volume-equivalent radii of the equipotential surfaces, effective accelerations and the inverse effective accelerations averaged over the same equipotential surfaces, and the properties of the L1 plane cross-sections. The tables are obtained for binaries where the ratios of the primary star mass to the companion star mass are from $10^{-6}$ to $10^5$ and include equipotential surfaces up to the star's outer Lagrangian point. We describe the numerical methods used to obtain these quantities and report how we verified the numerical results. We also describe and verify the method to obtain the effective acceleration for non-point mass distributions. We supply a sample code showing how to use our tables to get the average effective accelerations in one-dimensional stellar codes.

astro-ph.SR↗

arXiv2022

Low Mass X-ray Binary Simulation Data Release

We present DABS (Database of Accreting Binary Simulations), an open-access database of modelled Low Mass X-ray Binaries (LMXBs). DABS has been created using evolutionary tracks of neutron star and black hole LMXBs, spanning a large set of initial conditions for the accretor mass, donor mass, and orbital period. The LMXBs are evolved with the Convection and Rotation Boosted Magnetic Braking prescription. The most important asset of this online database is the tool PEAS (Progenitor Extractor for Accreting Systems). This tool can be used to predict the progenitors of any user-entered LMXB system and view their properties before the start of mass transfer. This prediction can facilitate preliminary searches for the progenitors of observed LMXBs, which can help in streamlining further detailed analyses. The PEAS tool can also be used to constrain population synthesis techniques that specialize in supernova kicks in binaries and common envelope outcomes.

astro-ph.HE↗

arXiv2021

Constraining Progenitors of Observed LMXBs Using CARB Magnetic Braking

We present a new method for constraining the mass transfer evolution of low mass X-ray binaries (LMXBs) - a reverse population synthesis technique. This is done using the detailed 1D stellar evolution code MESA (Modules for Experiments in Stellar Astrophysics) to evolve a high-resolution grid of binary systems spanning a comprehensive range of initial donor masses and orbital periods. We use the recently developed Convection And Rotation Boosted (CARB) magnetic braking scheme. The CARB magnetic braking scheme is the only magnetic braking prescription capable of reproducing an entire sample of well studied persistent LMXBs -- those with their mass ratios, periods and mass transfer rates that have been observationally determined. Using the reverse population synthesis technique, where we follow any simulated system that successfully reproduces an observed LMXB backwards, we have constrained possible progenitors for each observed well-studied persistent LMXB. We also determined that the minimum number of LMXB formations in the Milky Way is 1500 per Gyr if we exclude Cyg X-2. For Cyg X-2, the most likely formation rate is 9000 LMXB per Gyr. The technique we describe can be applied to any observed LMXB with well-constrained mass ratios, period and mass transfer rate. With the upcoming GAIA DR3 containing information on binary systems, this technique can be applied to the data release to search for progenitors of observed persistent LMXBs.

astro-ph.HE↗

arXiv2021

Simulating a stellar contact binary merger -- I. Stellar models

We study the initial conditions of a common envelope (CE) event resulting in a stellar merger. A merger's dynamics could be understood through its light curve, but no synthetic light curve has yet been created for the full evolution. Using the Smoothed Particle Hydrodynamics (SPH) code StarSmasher, we have created three-dimensional (3D) models of a 1.52 $M_\odot$ star that is a plausible donor in the V1309 Sco progenitor. The integrated total energy profiles of our 3D models match their initial one-dimensional (1D) models to within a 0.1 per cent difference in the top 0.1 $M_\odot$ of their envelopes. We have introduced a new method for obtaining radiative flux by linking intrinsically optically thick SPH particles to a single stellar envelope solution from a set of unique solutions. For the first time, we calculated our 3D models' effective temperatures to within a few per cent of the initial 1D models, and found a corresponding improvement in luminosity by a factor of $\gtrsim10^6$ compared to ray tracing. We let our highest resolution 3D model undergo Roche-lobe overflow with a 0.16 $M_\odot$ point-mass accretor ($P\simeq1.6$ days) and found a bolometric magnitude variability amplitude of $\sim0.3$ -- comparable to that of the V1309 Sco progenitor. Our 3D models are, in the top 0.1 $M_\odot$ of the envelope and in terms of total energy, the most accurate models so far of the V1309 Sco donor star. A dynamical simulation that uses the initial conditions we presented in this paper can be used to create the first ever synthetic CE evolution light curve.

astro-ph.SR↗

arXiv2021

The impact of common envelope development criteria on the formation of LIGO/Virgo sources

The treatment and criteria for development of unstable Roche lobe overflow (RLOF) that leads to the common envelope (CE) phase have hindered the evolutionary predictions for decades. In particular, the formation of black hole-black hole (BH-BH), black hole-neutron star (BH-NS), and neutron star-neutron star (NS-NS) merging binaries depends sensitively on the CE phase in classical isolated binary evolution model. All these mergers are now reported as LIGO/Virgo sources or source candidates. CE is even considered by some as a mandatory phase in the formation of BH-BH, BH-NS or NS-NS mergers in binary evolution. At the moment, there is no full first-principles model for development of CE. We employ the Startrack population synthesis code to test the current advancements in studies on stability of RLOF for massive donors to assess their effect on LIGO/Virgo source population. In particular, we allow for more restrictive CE development criteria for massive donors. We also test a modified condition for switching between different types of stable mass transfer. Implemented modifications significantly influence basic properties of merging double compact objects, sometimes in non-intuitive way. For one of tested models with restricted CE development criteria local merger rate density for BH-BH systems increased due to emergence of a new dominant formation scenario without any CE phase. We find that the changes in highly uncertain assumptions on RLOF physics may significantly affect (i) local merger rate density, (ii) shape of the mass and mass ratio distributions, and (iii) dominant evolutionary formation (with and without CE) scenarios of LIGO/Virgo sources. Our results demonstrate that without sufficiently strong constraints on RLOF physics, one is not able to draw fully reliable conclusions about the population of double compact object systems based on population synthesis studies.

astro-ph.HE↗

arXiv2020

A 3D radiation-hydrodynamic AGB binary model

The origin of chemically peculiar stars and non-zero eccentricity in evolved close binaries have been long-standing problems in binary stellar evolution. Answers to these questions may trace back to an intense mass transfer during AGB binary phase. In this work, we use AstroBEAR to solve the 3D radiation-hydrodynamic equations and calculate the mass transfer rate in asymptotic-giant-branch (AGB) binaries that undergo the wind-Roche-lobe-overflow or Bondi-Hoyle-Lyttleton (BHL) accretion. MESA produces the density and temperature of the boundary condition of the AGB star. To improve the resolution of the dynamics of a circumbinary disk, we implement an azimuthal angle-dependent 3D radiation transfer. We consider optically thin cooling and obtain the number density of the coolants by solving Saha equations. One of the goals of this work is to illustrate the transition from the wind-Roche-lobe-overflow to BHL accretion. Both circumbinary disks and spiral structure outflows can appear in the simulations. Circumbinary disks may form when the optical thickness in the equatorial region increases. The increase of the optical thickness is due to the deflected wind. The resulting mass transfer efficiency in our models is up to a factor of 8 times higher than what the standard BHL accretion scenario predicts, and the outflow gains up to 91% of its initial angular momentum when it reaches 1.3 binary separations. Consequently, some AGB binaries may undergo orbit shrinkage, and some will expand. The high mass transfer efficiency is closely related to the presence of the circumbinary disks.

astro-ph.SR↗

arXiv2018

A Comparison of Microbial Genome Web Portals

Microbial genome web portals have a broad range of capabilities that address a number of information-finding and analysis needs for scientists. This article compares the capabilities of the major microbial genome web portals to aid researchers in determining which portal(s) are best suited to solving their information-finding and analytical needs. We assessed both the bioinformatics tools and the data content of BioCyc, KEGG, Ensembl Bacteria, KBase, IMG, and PATRIC. For each portal, our assessment compared and tallied the available capabilities. The strengths of BioCyc include its genomic and metabolic tools, multi-search capabilities, table-based analysis tools, regulatory network tools and data, omics data analysis tools, breadth of data content, and large amount of curated data. The strengths of KEGG include its genomic and metabolic tools. The strengths of Ensembl Bacteria include its genomic tools and large number of genomes. The strengths of KBase include its genomic tools and metabolic models. The strengths of IMG include its genomic tools, multi-search capabilities, large number of genomes, table-based analysis tools, and breadth of data content. The strengths of PATRIC include its large number of genomes, table-based analysis tools, metabolic models, and breadth of data content.

q-bio.GN↗

arXiv2018

On the use of hydrogen recombination energy during common envelope events

In this Letter we discuss what happens to hydrogen recombination energy that is released during regular common envelope (CE) events, as opposed to self-regulated CE events. We show that the amount of recombination energy that can be transferred away by either convection or radiation from the regions where recombination takes place is negligible. Instead, recombination energy is destined to be used either to help CE expansion, as a work term, or to accelerate local fluid elements. The exceptions are donors that initially have very high entropy material, $S/(k_B N_A)>37$ mol g$^{-1}$. The analysis and conclusions are independent of specific stellar models or evolutionary codes, and rely on fundamental properties of stellar matter such as the equation of state, Saha equation and opacities, as well as on stellar structure equations and the mixing length theory of convection.

astro-ph.SR↗

arXiv2017

Evolution of binaries with compact objects in globular clusters

Dynamical interactions that take place between objects in dense stellar systems lead to frequent formation of exotic stellar objects, unusual binaries, and systems of higher multiplicity. They are most important for the formation of binaries with neutron stars and black holes, which are usually observationally revealed in mass-transferring binaries. Here we review the current understanding of compact object's retention, of the metallicity dependence on the formation of low-mass X-ray binaries with neutron stars, and how mass-transferring binaries with a black hole and a white dwarf can be formed. We discuss as well one old unsolved puzzle and two new puzzles posed by recent observations: what descendants do ultra-compact X-ray binaries produce, how are very compact triples formed, and how can black hole low-mass X-ray binaries acquire non-degenerate companions?

astro-ph.SR↗

arXiv2017

Common envelope: progress and transients

We review the fundamentals and the recent developments in understanding of common envelope physics. We report specifically on the progress that was made by the consideration of the recombination energy. This energy is found to be responsible for the complete envelope ejection in the case of a prompt binary formation, for the delayed dynamical ejections in the case of a self-regulated spiral-in, and for the steady recombination outflows during the transition between the plunge-in and the self-regulated spiral-in. Due to different ways how the recombination affects the common envelope during fast and slow spiral-ins, the apparent efficiency of the orbital energy use can be different between the two types of spiral-ins by a factor of ten. We also discuss the observational signatures of the common envelope events, their link a new class of astronomical transients, Luminous Red Novae, and to a plausible class of very luminous irregular variables.

astro-ph.SR↗

arXiv2017

Formation of black hole X-ray binaries with non-degenerate donors in globular clusters

In this Letter we propose a formation channel for low-mass X-ray binaries with black hole accretors and non-degenerate donors via grazing tidal encounters with subgiants. We estimate that in a typically dense globular cluster with the core density of $10^5$ stars pc$^{-3}$, the formation rates are about one binary per Gyr per 50-100 retained black holes. The donors -- stripped subgiants -- will be strongly underluminous when compared to subgiant or giant branch stars of the same colors. The products of tidal stripping are underluminous by at least one magnitude for several hundred million years, when compared to normal stars of the same color, and differ from underluminous red stars that could be produced by non-catastrophic mass transfer in an ordinary binary. The dynamically formed binaries become quiescent low-mass X-ray binaries, with lifetimes of about a Gyr. The expected number of X-ray binaries is one per 50-200 retained black holes, while the expected number of strongly underluminous subsubgiant is about half this. The presence of strongly underluminous stars in a globular cluster may be indicative of black holes presence.

astro-ph.HE↗