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Nathan E. Glatt-Holtz

Publications and source records attributed to Nathan E. Glatt-Holtz.

At least 19 recordsLinked to original sources

Stable Matrix Parametrizations and Structured Adjoints for Ornstein-Uhlenbeck Processes

Ornstein-Uhlenbeck processes with flexible multivariate drift matrices are powerful models for capturing coupled, asymmetric, and damped-oscillatory mean reversion. However, likelihood-based inference is challenging because the drift matrix must remain Hurwitz stable, while likelihood and gradient evaluations require repeated, costly computation and differentiation of the drift matrix exponential and of solutions to the associated Lyapunov equation. We introduce the Hurwitz smooth spectral block parametrization (H-SSBP), which represents the drift as a change of basis applied to independent one- and two-dimensional stable blocks. Simple scalar constraints enforce Hurwitz stability, while the two-dimensional blocks vary smoothly between real- and complex-eigenvalue regimes, avoiding discrete model selection. The H-SSBP represents every real Hurwitz matrix diagonalizable over the complex numbers and has dense, full-measure support within the Hurwitz cone. Its block structure reduces the OU transition matrix, stationary and innovation covariances, and their reverse-mode derivatives to constant-size block or block-pair computations plus change-of-basis multiplications. Numerical experiments demonstrate dramatic speed-ups over alternatives, particularly for matrix-exponential adjoints and Lyapunov-equation kernels. Real-data analyses of asynchronous financial data and multivariate phylogenetic traits illustrate the proposed framework in practice.

stat.CO↗

On the mixing properties of some preconditioned multiproposal Markov Chain Monte Carlo algorithms

We study two recently discovered "dimension-free" Monte Carlo sampling algorithms, the multiproposal and multiple-try preconditioned Crank-Nicolson methods (mpCN and MTpCN). These methods were designed to address certain non-parametric (i.e. infinite-dimensional) sampling problems, defined relative to a Gaussian reference measure, by combining proposal and acceptance mechanisms that take non-trivial advantage of parallel computing architectures. We provide the first rigorous analysis of both algorithms, establishing exponential convergence to the target measure through the weak Harris framework, both for a finite number of proposals and in the infinite-proposal limit. The resulting mixing rates are independent of the dimension and uniform in the number of proposals, and apply to targets with bounded, Lipschitz log-likelihoods, without requiring convexity. At the center of the analysis are two new coupling constructions, together with analytical tools of independent interest, yielding Wasserstein contraction estimates, $L^2$ spectral gaps, and associated statistical guarantees (laws of large numbers, central limit theorems, and non-asymptotic concentration bounds) for the corresponding Monte Carlo estimators. These theoretical results are complemented by a numerical study on benchmark problems with complex posterior geometries and high-dimensional structure, comparing mpCN and MTpCN against standard pCN and independent parallel-chain implementations. The experiments indicate that the multiproposal methods can offer a shorter warm-up phase and greater robustness to the choice of tuning parameters as the number of proposals grows.

math.ST↗

Mad Props: Parallelism in Markov Chain Monte Carlo Through the Lens of the Infinite Proposal Limit

Multiproposal MCMC (MP-MCMC) algorithms use clouds of proposals to efficiently traverse state spaces and overcome complex target geometries. While MCMC methods are embarrassingly parallel by nature, the non-trivial forms of parallelism provided by the MP-MCMC formalism sometimes leads to significant improvements over a naive approach. Here, one important tuning parameter is the number of proposals p used by a single MP-MCMC iteration. While a number of computational strategies have been proposed to efficiently leverage large numbers of proposals within the MP-MCMC paradigm, much remains unknown about these algorithms, particularly in the large p-regime. In this contribution, we discover surprising results by identifying and studying several promising new methods (Algorithm 1.1, Algorithm 3.3, Algorithm 3.4), ruling out other extant approaches and discovering new relationships between different MP-MCMC methodologies. Our analysis is centered on a general state space multiproposal involutive theory recently constructed by the authors combined with the consideration of the large p-limit kernels for MP-MCMC algorithms within a variety of different classes of proposal and acceptance structures.

stat.CO↗

The short memory limit for long time statistics in a stochastic Coleman-Gurtin model of heat conduction

We consider a class of semi-linear differential Volterra equations with polynomial-type potentials that incorporates the effects of memory while being subjected to random perturbations via an additive Gaussian noise. Our main study is the long time statistics of the system in the singular regime as the memory kernel collapses to a Dirac function. Specifically, we show that provided that sufficiently many directions in the phase space are stochastically forced, there is a unique invariant probability measure to which the system converges, with respect to a suitable Wasserstein-type topology, and at an exponential rate which is independent of the decay rate of the memory kernel. We then prove the convergence of this unique statistically steady state to the unique invariant probability measure of the classical stochastic reaction-diffusion equation in the zero-memory limit. Consequently, we establish the global-in-time validity of the short memory approximation.

math.PR↗

Existence and higher regularity of statistically steady states for the stochastic Coleman-Gurtin equation

We study a class of semi-linear differential Volterra equations with polynomial-type potentials that incorporates the effects of memory while being subjected to random perturbations via an additive Gaussian noise. We show that for a broad class of non-linear potentials, the system always admits invariant probability measures. However, the presence of memory effects precludes access to compactness in a typical fashion. In this paper, this obstacle is overcome by introducing functional spaces adapted to the memory kernels, thereby allowing one to recover compactness. Under the assumption of sufficiently smooth noise, it is then shown that the statistically stationary states possess higher-order regularity properties dictated by the structure of the nonlinearity. This is established through a control argument that asymptotically transfers regularity onto the solution by exploiting the underlying Lyapunov structure of the system in a novel way.

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Embracing Uncertainty in "Small Data" Problems: Estimating Earthquakes from Historical Anecdotes

Seismic risk estimates will be vastly improved with an increased understanding of historical (and pre-historical) seismic events. However the only existing data for these events is anecdotal and sparse. To address this we developed a framework based on Bayesian inference to estimate the location and magnitude of pre-instrumental earthquakes. We present a careful analysis of results obtained from this procedure which justifies the sampling algorithm, its convergence to the resultant posterior distribution, and yields estimates on uncertainties in the relevant quantities. Using a priori estimates on the posterior and numerical approximations of the Hessian, we demonstrate that the 1852 Banda Sea earthquake and tsunami is indeed well-understood given certain explicit hypotheses. Using the same techniques we also find that the 1820 south Sulawesi event may best be explained by a dual fault rupture, best attributed to the Kalatoa fault potentially conjoining the Flores thrust and Walanae/Selayar fault.

stat.AP↗

Parallel MCMC Algorithms: Theoretical Foundations, Algorithm Design, Case Studies

Parallel Markov Chain Monte Carlo (pMCMC) algorithms generate clouds of proposals at each step to efficiently resolve a target probability distribution. We build a rigorous foundational framework for pMCMC algorithms that situates these methods within a unified 'extended phase space' measure-theoretic formalism. Drawing on our recent work that provides a comprehensive theory for reversible single proposal methods, we herein derive general criteria for multiproposal acceptance mechanisms which yield ergodic chains on general state spaces. Our formulation encompasses a variety of methodologies, including proposal cloud resampling and Hamiltonian methods, while providing a basis for the derivation of novel algorithms. In particular, we obtain a top-down picture for a class of methods arising from 'conditionally independent' proposal structures. As an immediate application, we identify several new algorithms including a multiproposal version of the popular preconditioned Crank-Nicolson (pCN) sampler suitable for high- and infinite-dimensional target measures which are absolutely continuous with respect to a Gaussian base measure. To supplement our theoretical results, we carry out a selection of numerical case studies that evaluate the efficacy of these novel algorithms. First, noting that the true potential of pMCMC algorithms arises from their natural parallelizability, we provide a limited parallelization study using TensorFlow and a graphics processing unit to scale pMCMC algorithms that leverage as many as 100k proposals at each step. Second, we use our multiproposal pCN algorithm (mpCN) to resolve a selection of problems in Bayesian statistical inversion for partial differential equations motivated by fluid measurement. These examples provide preliminary evidence of the efficacy of mpCN for high-dimensional target distributions featuring complex geometries and multimodal structures.

stat.CO↗

On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2

The continuous-time Markov chain (CTMC) is the mathematical workhorse of evolutionary biology. Learning CTMC model parameters using modern, gradient-based methods requires the derivative of the matrix exponential evaluated at the CTMC's infinitesimal generator (rate) matrix. Motivated by the derivative's extreme computational complexity as a function of state space cardinality, recent work demonstrates the surprising effectiveness of a naive, first-order approximation for a host of problems in computational biology. In response to this empirical success, we obtain rigorous deterministic and probabilistic bounds for the error accrued by the naive approximation and establish a "blessing of dimensionality" result that is universal for a large class of rate matrices with random entries. Finally, we apply the first-order approximation within surrogate-trajectory Hamiltonian Monte Carlo for the analysis of the early spread of SARS-CoV-2 across 44 geographic regions that comprise a state space of unprecedented dimensionality for unstructured (flexible) CTMC models within evolutionary biology.

stat.CO↗

Long-term accuracy of numerical approximations of SPDEs with the stochastic Navier-Stokes equations as a paradigm

This work introduces a general framework for establishing the long time accuracy for approximations of Markovian dynamical systems on separable Banach spaces. Our results illuminate the role that a certain uniformity in Wasserstein contraction rates for the approximating dynamics bears on long time accuracy estimates. In particular, our approach yields weak consistency bounds on $\mathbb{R}^+$ while providing a means to sidestepping a commonly occurring situation where certain higher order moment bounds are unavailable for the approximating dynamics. Additionally, to facilitate the analytical core of our approach, we develop a refinement of certain `weak Harris theorems'. This extension expands the scope of applicability of such Wasserstein contraction estimates to a variety of interesting SPDE examples involving weaker dissipation or stronger nonlinearity than would be covered by the existing literature. As a guiding and paradigmatic example, we apply our formalism to the stochastic 2D Navier-Stokes equations and to a semi-implicit in time and spectral Galerkin in space numerical approximation of this system. In the case of a numerical approximation, we establish quantitative estimates on the approximation of invariant measures as well as prove weak consistency on $\mathbb{R}^+$. To develop these numerical analysis results, we provide a refinement of $L^2_x$ accuracy bounds in comparison to the existing literature which are results of independent interest.

math.NA↗

A Statistical Framework for Domain Shape Estimation in Stokes Flows

We develop and implement a Bayesian approach for the estimation of the shape of a two dimensional annular domain enclosing a Stokes flow from sparse and noisy observations of the enclosed fluid. Our setup includes the case of direct observations of the flow field as well as the measurement of concentrations of a solute passively advected by and diffusing within the flow. Adopting a statistical approach provides estimates of uncertainty in the shape due both to the non-invertibility of the forward map and to error in the measurements. When the shape represents a design problem of attempting to match desired target outcomes, this "uncertainty" can be interpreted as identifying remaining degrees of freedom available to the designer. We demonstrate the viability of our framework on three concrete test problems. These problems illustrate the promise of our framework for applications while providing a collection of test cases for recently developed Markov Chain Monte Carlo (MCMC) algorithms designed to resolve infinite dimensional statistical quantities.

math.OC↗

On the accept-reject mechanism for Metropolis-Hastings algorithms

This work develops a powerful and versatile framework for determining acceptance ratios in Metropolis-Hastings type Markov kernels widely used in statistical sampling problems. Our approach allows us to derive new classes of kernels which unify random walk or diffusion-type sampling methods with more complicated "extended phase space" algorithms based around ideas from Hamiltonian dynamics. Our starting point is an abstract result developed in the generality of measurable state spaces that addresses proposal kernels that possess a certain involution structure. Note that, while this underlying proposal structure suggests a scope which includes Hamiltonian-type kernels, we demonstrate that our abstract result is, in an appropriate sense, equivalent to an earlier general state space setting developed in [Tierney, Annals of Applied Probability, 1998] where the connection to Hamiltonian methods was more obscure. Altogether, the theoretical unity and reach of our main result provides a basis for deriving novel sampling algorithms while laying bare important relationships between existing methods.

math.ST↗

Sensitivity of steady states in a degenerately-damped stochastic Lorenz system

We study stability of solutions for a randomly driven and degenerately damped version of the Lorenz '63 model. Specifically, we prove that when damping is absent in one of the temperature components, the system possesses a unique invariant probability measure if and only if noise acts on the convection variable. On the other hand, if there is a positive growth term on the vertical temperature profile, we prove that there is no normalizable invariant state. Our approach relies on the derivation and analysis of non-trivial Lyapunov functions which ensure positive recurrence or null-recurrence/transience of the dynamics.

math.PR↗

Mixing Rates for Hamiltonian Monte Carlo Algorithms in Finite and Infinite Dimensions

We establish the geometric ergodicity of the preconditioned Hamiltonian Monte Carlo (HMC) algorithm defined on an infinite-dimensional Hilbert space, as developed in [Beskos et al., Stochastic Process. Appl., 2011]. This algorithm can be used as a basis to sample from certain classes of target measures which are absolutely continuous with respect to a Gaussian measure. Our work addresses an open question posed in [Beskos et al., Stochastic Process. Appl., 2011], and provides an alternative to a recent proof based on exact coupling techniques given in arXiv:1909.07962. The approach here establishes convergence in a suitable Wasserstein distance by using the weak Harris theorem together with a generalized coupling argument. We also show that a law of large numbers and central limit theorem can be derived as a consequence of our main convergence result. Moreover, our approach yields a novel proof of mixing rates for the classical finite-dimensional HMC algorithm. As such, the methodology we develop provides a flexible framework to tackle the rigorous convergence of other Markov Chain Monte Carlo algorithms. Additionally, we show that the scope of our result includes certain measures that arise in the Bayesian approach to inverse PDE problems, cf. [Stuart, Acta Numer., 2010]. Particularly, we verify all of the required assumptions for a certain class of inverse problems involving the recovery of a divergence free vector field from a passive scalar, arXiv:1808.01084v3.

math.ST↗

On Bayesian Consistency for Flows Observed Through a Passive Scalar

We consider the statistical inverse problem of estimating a background fluid flow field $\mathbf{v}$ from the partial, noisy observations of the concentration $θ$ of a substance passively advected by the fluid, so that $θ$ is governed by the partial differential equation \[ \frac{\partial}{\partial t}θ(t,\mathbf{x}) = -\mathbf{v}(\mathbf{x}) \cdot \nabla θ(t,\mathbf{x}) + κΔθ(t,\mathbf{x}) \quad \text{ , } \quad θ(0,\mathbf{x}) = θ_0(\mathbf{x}) \] for $t \in [0,T], T>0$ and $\mathbf{x} \in \mathbb{T}=[0,1]^2$. The initial condition $θ_0$ and diffusion coefficient $κ$ are assumed to be known and the data consist of point observations of the scalar field $θ$ corrupted by additive, i.i.d. Gaussian noise. We adopt a Bayesian approach to this estimation problem and establish that the inference is consistent, i.e., that the posterior measure identifies the true background flow as the number of scalar observations grows large. Since the inverse map is ill-defined for some classes of problems even for perfect, infinite measurements of $θ$, multiple experiments (initial conditions) are required to resolve the true fluid flow. Under this assumption, suitable conditions on the observation points, and given support and tail conditions on the prior measure, we show that the posterior measure converges to a Dirac measure centered on the true flow as the number of observations goes to infinity.

math.ST↗

A Bayesian Approach to Estimating Background Flows from a Passive Scalar

We consider the statistical inverse problem of estimating a background flow field (e.g., of air or water) from the partial and noisy observation of a passive scalar (e.g., the concentration of a solute), a common experimental approach to visualizing complex fluid flows. Here the unknown is a vector field that is specified by a large or infinite number of degrees of freedom. Since the inverse problem is ill-posed, i.e., there may be many or no background flows that match a given set of observations, we adopt a Bayesian approach to regularize it. In doing so, we leverage frameworks developed in recent years for infinite-dimensional Bayesian inference. The contributions in this work are threefold. First, we lay out a functional analytic and Bayesian framework for approaching this problem. Second, we define an adjoint method for efficient computation of the gradient of the log likelihood, a key ingredient in many numerical methods. Finally, we identify interesting example problems that exhibit posterior measures with simple and complex structure. We use these examples to conduct a large-scale benchmark of Markov Chain Monte Carlo methods developed in recent years for infinite-dimensional settings. Our results indicate that these methods are capable of resolving complex multimodal posteriors in high dimensions.

math.NA↗

Scaling and Saturation in Infinite-Dimensional Control Problems with Applications to Stochastic Partial Differential Equations

We establish the dual notions of scaling and saturation from geometric control theory in an infinite-dimensional setting. This generalization is applied to the low-mode control problem in a number of concrete nonlinear partial differential equations. We also develop applications concerning associated classes of stochastic partial differential equations (SPDEs). In particular, we study the support properties of probability laws corresponding to these SPDEs as well as provide applications concerning the ergodic and mixing properties of invariant measures for these stochastic systems.

math.PR↗

GPU-Accelerated Particle Methods for Evaluation of Sparse Observations for PDE-Constrained Inverse Problems

We consider the inverse problem of estimating parameters of a driven diffusion (e.g., the underlying fluid flow, diffusion coefficient, or source terms) from point measurements of a passive scalar (e.g., the concentration of a pollutant). We present two particle methods that leverage the structure of the inverse problem to enable efficient computation of the forward map, one for time evolution problems and one for a Dirichlet boundary-value problem. The methods scale in a natural fashion to modern computational architectures, enabling substantial speedup for applications involving sparse observations and high-dimensional unknowns. Numerical examples of applications to Bayesian inference and numerical optimization are provided.

math.NA↗