arXiv subjects

Neil Finlayson

Publications and source records attributed to Neil Finlayson.

4 recordsLinked to original sources

arXiv2025

Cerebral blood flow monitoring using a deep learning implementation of the two-layer DCS analytical model with a 512x512 SPAD array

Diffuse correlation spectroscopy (DCS) analyzes the autocorrelation function of photons scattered by red blood cells, enabling non-invasive, continuous measurement of deep tissue blood flow at the bedside. Multi-layer DCS models (two- and three-layer) enhance cerebral blood flow index (CBFi) sensitivity and mitigate interference from extracerebral tissues. However, these models require multiple predefined parameters and are computationally intensive, making them impractical for real-time bedside monitoring. To address this challenge, we integrate a single-photon avalanche diode (SPAD) array with a deep learning (DL)-based approach trained on data generated by the two-layer analytical model. This method bypasses traditional model fitting, enabling real-time CBFi monitoring while minimizing superficial tissue contamination. We first validate our approach using Monte Carlo-simulated test datasets, demonstrating superior accuracy in relative CBFi estimation (5.8% error vs. 19.1% for conventional fitting) and enhanced CBFi sensitivity (87.1% vs. 55.4%). Additionally, our method effectively isolates shallow blood flow changes and 750-fold faster than single-exponential fitting in a realistic scenario. We further evaluate the system in a healthy adult, achieving real-time CBFi monitoring and pulsatile waveform recovery during a brain activity test using a 512 512 SPAD array sensor. These results highlight the potential of our approach for real-time brain activity monitoring.

physics.med-ph↗

arXiv2025

Real-time diffuse correlation spectroscopy with a chip-based correlator for measuring human cerebral blood flow and brain function

Diffuse correlation spectroscopy (DCS) is a noninvasive optical technique that probes microvascular blood flow in deep tissues. Here, we present and validate a new on-chip hardware correlator for high-speed DCS measurements. The correlator is embedded in a custom-built 512 x 512 single-photon avalanche diode (SPAD) array named ATLAS, which computes intensity autocorrelation functions directly on-chip at a sampling rate of 116 Hz - the fastest DCS acquisition reported to date. Unlike conventional DCS systems that suffer from low light throughput and therefore cannot resolve cardiac pulsations at source-detector separations (rho) beyond 30 mm, our massively parallel on-chip architecture computes autocorrelations within each macropixel, eliminating the data-throughput bottleneck. This enables high-SNR, real-time detection of pulsatile blood flow even at rho = 50 mm on the human forehead. In phantom experiments at rho = 25 mm, ATLAS-DCS achieves a 12-fold improvement in signal-to-noise ratio over a conventional single-channel DCS instrument while operating at 116 Hz. In human subjects, we resolve functional hyperemia during a mental arithmetic task at rho = 30 mm. Furthermore, we integrate ATLAS DCS with a frequency-domain near-infrared spectroscopy (FD-NIRS) module, enabling simultaneous monitoring of blood flow and tissue oxygenation. With this combined system, we can concurrently resolve core hemodynamic parameters. The on-chip parallelized DCS design substantially improves detection speed, depth sensitivity, and real-time capability, paving the way for wearable, high-speed cerebral blood flow monitoring in both clinical and research settings.

physics.ins-det↗

arXiv2025

Fiber-based Ultra-High Speed Diffuse Speckle Contrast Analysis System for Deep Blood Flow Sensing Using a Large SPAD Camera

Diffuse speckle contrast analysis (DSCA), also called speckle contrast optical spectroscopy(SCOS), has emerged as a groundbreaking optical imaging technique for tracking dynamic biological processes, including blood flow and tissue perfusion. Recent advancements in single-photon avalanche diode (SPAD) cameras have unlocked exceptional capabilities in sensitivity, time resolution, and high frame rate imaging. Despite this, the application of large-format SPAD arrays in speckle contrast analysis is still relatively uncommon. In this study, we introduce a pioneering use of a large format SPAD camera for DSCA. By harnessing the camera's high temporal resolution and photon detection efficiency, we significantly enhance the accuracy and robustness of speckle contrast measurements. Our experimental results demonstrate the system's remarkable ability to capture rapid temporal variations over a broad field of view, enabling detailed spatiotemporal analysis. Through simulations, phantom experiments, and in vivo studies, we validate the approach's potential for a wide range of biomedical applications, such as cuff occlusion tests and functional tissue monitoring. This work highlights the transformative impact of large SPAD cameras on DSCA, paving the way for new breakthroughs in optical imaging.

physics.ins-det↗

arXiv2022

Deep Learning-Assisted Co-registration of Full-Spectral Autofluorescence Lifetime Microscopic Images with H&E-Stained Histology Images

Autofluorescence lifetime images reveal unique characteristics of endogenous fluorescence in biological samples. Comprehensive understanding and clinical diagnosis rely on co-registration with the gold standard, histology images, which is extremely challenging due to the difference of both images. Here, we show an unsupervised image-to-image translation network that significantly improves the success of the co-registration using a conventional optimisation-based regression network, applicable to autofluorescence lifetime images at different emission wavelengths. A preliminary blind comparison by experienced researchers shows the superiority of our method on co-registration. The results also indicate that the approach is applicable to various image formats, like fluorescence intensity images. With the registration, stitching outcomes illustrate the distinct differences of the spectral lifetime across an unstained tissue, enabling macro-level rapid visual identification of lung cancer and cellular-level characterisation of cell variants and common types. The approach could be effortlessly extended to lifetime images beyond this range and other staining technologies.

eess.IV↗