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Nicholas J. Derr

Publications and source records attributed to Nicholas J. Derr.

4 recordsLinked to original sources

Reciprocal swimming at intermediate Reynolds number

In Stokes flow, Purcell's scallop theorem forbids objects with time-reversible (reciprocal) swimming strokes from moving. In the presence of inertia, this restriction is eased and reciprocally deforming bodies can swim. A number of recent works have investigated dimer models that swim reciprocally at intermediate Reynolds numbers Re ~ 1-1000. These show interesting results (e.g. switches of the swim direction as a function of inertia) but the results vary and seem to be case-specific. Here, we introduce a general model and investigate the behaviour of an asymmetric spherical dimer of oscillating length for small-amplitude motion at intermediate Re. In our analysis we make the important distinction between particle and fluid inertia, both of which need to be considered separately. We asymptotically expand the Navier-Stokes equations in the small amplitude limit to obtain a system of linear PDEs. Using a combination of numerical (Finite Element) and analytical (reciprocal theorem, method of reflections) methods we solve the system to obtain the dimer's swim speed and show that there are two mechanisms that give rise to motion: boundary conditions (an effective slip velocity) and Reynolds stresses. Each mechanism is driven by two classes of sphere-sphere interactions, between one sphere's motion and 1) the oscillating background flow induced by the other's motion, and 2) a geometric asymmetry induced by the other's presence. We can thus unify and explain behaviours observed in other works. Our results show how sensitive, counter-intuitive and rich motility is in the parameter space of finite inertia of particles and fluid.

physics.flu-dyn

A projection method for porous media flow

Flow through porous, elastically deforming media is present in a variety of natural contexts ranging from large-scale geophysics to cellular biology. In the case of incompressible constituents, the porefluid pressure acts as a Lagrange multiplier to satisfy the resulting constraint on fluid divergence. The resulting system of equations is a possibly non-linear saddle-point problem and difficult to solve numerically, requiring nonlinear implicit solvers or flux-splitting methods. Here, we present a method for the simulation of flow through porous media and its coupled elastic deformation. The pore pressure field is calculated at each time step by correcting trial velocities in a manner similar to Chorin projection methods. We demonstrate the method's second-order convergence in space and time and show its application to phase separating neo-Hookean gels.

physics.flu-dyn

Eulerian simulation of complex suspensions and biolocomotion in three dimensions

We present a numerical method specifically designed for simulating three-dimensional fluid--structure interaction (FSI) problems based on the reference map technique (RMT). The RMT is a fully Eulerian FSI numerical method that allows fluids and large-deformation elastic solids to be represented on a single fixed computational grid. This eliminates the need for meshing complex geometries typical in other FSI approaches, and greatly simplifies the coupling between fluid and solids. We develop the first three-dimensional implementation of the RMT, parallelized using the distributed memory paradigm, to simulate incompressible FSI with neo-Hookean solids. As part of our new method, we develop a new field extrapolation scheme that works efficiently in parallel. Through representative examples, we demonstrate the method's accuracy and convergence, as well as its suitability in investigating many-body and active systems. The examples include settling of a mixture of heavy and buoyant soft ellipsoids, lid-driven cavity flow containing a soft sphere, and swimmers actuated via active stress.

physics.flu-dyn

Flow-driven branching in a frangible porous medium

Channel formation and branching is widely seen in physical systems where movement of fluid through a porous structure causes the spatiotemporal evolution of the medium in response to the flow, in turn causing flow pathways to evolve. We provide a simple theoretical framework that embodies this feedback mechanism in a multi-phase model for flow through a fragile porous medium with a dynamic permeability. Numerical simulations of the model show the emergence of branched networks whose topology is determined by the geometry of external flow forcing. This allows us to delineate the conditions under which splitting and/or coalescing branched network formation is favored, with potential implications for both understanding and controlling branching in soft frangible media.

physics.flu-dyn