arXiv subjects

Nicholas W. Phillips

Publications and source records attributed to Nicholas W. Phillips.

14 recordsLinked to original sources

arXiv2026

Advanced Brain Tissue Imaging with Data-Consistent Diffusion Priors in Laminographic X-Ray Nanoimaging

Nanoscale imaging of mammalian brains is critical for connectomics. X-ray laminography enables high-throughput imaging of extended, plate-like biological specimens. However, the tilted acquisition geometry leads to incomplete Fourier-space coverage, giving rise to a missing-cone of information. Conventional reconstruction methods cannot recover unmeasured information within the cone, resulting in artifacts that distort fine brain structures. While resolving these requires modeling 3D structure, direct 3D deep learning approaches are limited by data scarcity and computational cost. Here we introduce LUCID (Laminography with Unified Consistent Diffusion), a framework that combines multi-view diffusion priors with projection-domain data consistency. LUCID integrates complementary 3D structural information while enforcing strict alignment with the laminography forward model. On simulated datasets, LUCID substantially improves spatial fidelity and restores missing Fourier components, outperforming baseline methods. Applied to experimental laminography data, LUCID generalizes robustly despite being trained exclusively on fully sampled tomographic volumes, and effectively recovers unmeasured Fourier information.

cs.CV↗

arXiv2025

Soft x-ray ptychography with SOPHIE: Guide and instrumentation

Soft x-ray ptychography is becoming a key synchrotron microscopy technique in the fields of condensed matter physics, chemistry, and environmental and life sciences. Its attractiveness across broad disciplinary fields is owed to the favorable combination of high spatial resolution and strong contrast mechanisms. The SOft X-ray Ptychography Highly Integrated Endstation (SOPHIE) at the Swiss Light Source (SLS) was developed to accommodate soft x-ray ptychography experiments requiring high spatial resolution, in addition to high chemical and ferroic sensitivities. An introduction to soft x-ray ptychography with SOPHIE aimed at prospective users is provided. Furthermore, an overview of the instrumentation of SOPHIE is given along with an example of the imaging capabilities, which demonstrate the achievement of a sub-10 nm spatial resolution at a photon energy of 706 eV.

physics.ins-det↗

arXiv2025

Nanoscale Domain Wall Dynamics in Micromagnetic Structures with Weak Perpendicular Anisotropy

Time-resolved pump-probe soft X-ray ptychography and Scanning Transmission X-ray Microscopy (STXM) were employed to study the magnetic domain wall dynamics in microstructures of permalloy (Ni$_{81}$Fe$_{19}$; Py) with a weak growth-induced perpendicular magnetic anisotropy. The X-ray magnetic circular dichroism (XMCD) images of a micrometer-sized Py square (160 nm thickness) and an elliptical disk (80 nm thickness) show flux-closure patterns with domain walls that fall into alternating out-of-plane (OOP) magnetization states precipitated by the perpendicular anisotropy, which is a precursor of the nucleation of stripe domains at higher thicknesses. An oscillating magnetic field at frequencies from tens of MHz to GHz and up to 4 mT magnitude excited dynamic modes in the domain walls along with the vortex core gyration. The domain wall dynamics include the translation of inversion points of the OOP magnetization and nucleation of one-dimensional spin waves.

cond-mat.mtrl-sci↗

arXiv2025

Single-photon counting pixel detector for soft X-rays

Soft X-ray experiments at synchrotron light sources are essential for a wide range of research fields. However, commercially available detectors for this energy range often cannot deliver the necessary combination of quantum efficiency, signal-to-noise ratio, dynamic range, speed, and radiation hardness within a single system. While hybrid detectors have addressed these challenges effectively in the hard X-ray regime, specifically with single photon counting pixel detectors extensively used in high-performance synchrotron applications, similar solutions are desired for energies below 2 keV. In this work, we introduce the first single-photon-counting hybrid pixel detector capable of detecting X-ray energies as low as 550 eV, utilizing the internal amplification of Low-Gain Avalanche Diode (LGAD) sensors. This detector is thoroughly characterized in terms of Signal-to-Noise Ratio and Detective Quantum Efficiency. We demonstrate its capabilities through ptychographic imaging at MAX IV 4th generation synchrotron light source at the Fe L$_3$-edge (707 eV), showcasing the enhanced detection performance of the system. This development sets a new benchmark for soft X-ray applications at synchrotrons, paving the way for significant advancements in imaging and analysis at lower photon energies.

physics.ins-det↗

arXiv2025

Imaging ferroelectric domains with soft X-ray ptychography at the oxygen K-edge

The ferroelectric domain structure of a freestanding BiFeO$_3$ film was visualized by ptychographic dichroic imaging with linearly polarized X-rays at the O K-edge around 530 eV. The dichroic contrast is maximized at the energy of the hybridization of the O 2p state and the Fe 3d orbitals, which is split by the octahedral crystal field of the perovskite structure. The microscopy images thus obtained complement the ptychographic imaging of the antiferromagnetic contribution at the Fe L$_3$-edge. The approach can be extended to the separation of different ferroic contributions in other multiferroic oxides.

cond-mat.mtrl-sci↗

arXiv2024

Ptychographic nanoscale imaging of the magnetoelectric coupling in freestanding BiFeO$_3$

Understanding the magnetic and ferroelectric ordering of magnetoelectric multiferroic materials at the nanoscale necessitates a versatile imaging method with high spatial resolution. Here, soft X-ray ptychography is employed to simultaneously image the ferroelectric and antiferromagnetic domains in an 80 nm thin freestanding film of the room-temperature multiferroic BiFeO$_3$ (BFO). The antiferromagnetic spin cycloid of period 64 nm is resolved by reconstructing the corresponding resonant elastic X-ray scattering in real space and visualized together with mosaic-like ferroelectric domains in a linear dichroic contrast image at the Fe L$_3$ edge. The measurements reveal a near perfect coupling between the antiferromagnetic and ferroelectric ordering by which the propagation direction of the spin cycloid is locked orthogonally to the ferroelectric polarization. In addition, the study evinces both a preference for in-plane propagation of the spin cycloid and changes of the ferroelectric polarization by 71° between multiferroic domains in the epitaxial strain-free, freestanding BFO film. The results provide a direct visualization of the strong magnetoelectric coupling in BFO and of its fine multiferroic domain structure, emphasizing the potential of ptychographic imaging for the study of multiferroics and non-collinear magnetic materials with soft X-rays.

cond-mat.mtrl-sci↗

arXiv2022

Refinements for Bragg coherent X-ray diffraction imaging: Electron backscatter diffraction alignment and strain field computation

Bragg coherent X-ray diffraction imaging (BCDI) allows the three-dimensional (3D) measurement of lattice strain along the scattering vector for specific microcrystals. If at least three linearly independent reflections are measured, the 3D variation of the full lattice strain tensor within the microcrystal can be recovered. However, this requires knowledge of the crystal orientation, which is typically attained via estimates based on crystal geometry or synchrotron micro-beam Laue diffraction measurements. Here, we present an alternative method to determine the crystal orientation for BCDI measurements, by using electron backscatter diffraction (EBSD) to align Fe-Ni and Co-Fe alloy microcrystals on three different substrates. The orientation matrix is calculated from EBSD Euler angles and compared to the orientation determined using micro-beam Laue diffraction. The average angular mismatch between the orientation matrices is less than ~6 degrees, which is reasonable for the search for Bragg reflections. We demonstrate the use of an orientation matrix derived from EBSD to align and measure five reflections for a single Fe-Ni microcrystal using multi-reflection BCDI. Using this dataset, a refined strain field computation based on the gradient of the complex exponential of the phase is developed. This approach is shown to increase accuracy, especially in the presence of dislocations. Our results demonstrate the feasibility of using EBSD to pre-align BCDI samples and the application of more efficient approaches to determine the lattice strain tensor with greater accuracy.

cond-mat.mtrl-sci↗

arXiv2022

In situ Bragg coherent X-ray diffraction imaging of corrosion in a Co-Fe alloy microcrystal

Corrosion is a major concern for many industries, as corrosive environments can induce structural and morphological changes that lead to material dissolution and accelerate material failure. The progression of corrosion depends on nanoscale morphology, stress, and defects present. Experimentally monitoring this complex interplay is challenging. Here we implement in situ Bragg coherent X-ray diffraction imaging (BCDI) to probe the dissolution of a Co-Fe alloy microcrystal exposed to hydrochloric acid (HCl). By measuring five Bragg reflections from a single isolated microcrystal at ambient conditions, we compare the full three-dimensional (3D) strain state before corrosion and the strain along the [111] direction throughout the corrosion process. We find that the strained surface layer of the crystal dissolves to leave a progressively less strained surface. Interestingly, the average strain closer to the centre of the crystal increases during the corrosion process. We determine the localised corrosion rate from BCDI data, revealing the preferential dissolution of facets more exposed to the acid stream, highlighting an experimental geometry effect. These results bring new perspectives to understanding the interplay between crystal strain, morphology, and corrosion; a prerequisite for the design of more corrosion-resistant materials.

cond-mat.mtrl-sci↗

arXiv2021

Mapping data between sample and detector conjugated spaces in Bragg coherent diffraction imaging

Bragg coherent X-ray diffraction imaging (BCDI) is a non-destructive, lensless method for 3D-resolved, nanoscale strain imaging in micro-crystals. A challenge, particularly for new users of the technique, is accurate mapping of experimental data, collected in the detector reciprocal space coordinate frame, to more convenient orthogonal coordinates, e.g. attached to the sample. This is particularly the case since different coordinate conventions are used at every BCDI beamline. The reconstruction algorithms and mapping scripts composed for individual beamlines are not readily interchangeable. To overcome this, a BCDI experiment simulation with a plugin script that converts all beamline angles to a universal, right-handed coordinate frame is introduced, making it possible to condense any beamline geometry into three rotation matrices. The simulation translates a user-specified 3D complex object to different BCDI-related coordinate frames. It also allows the generation of synthetic coherent diffraction data that can be inserted into any BCDI reconstruction algorithm to reconstruct the original user-specified object. Scripts are provided to map from sample space to detector conjugated space, detector conjugated space to sample space and detector conjugated space to detector conjugated space for a different reflection. This provides the reader with the basis for a flexible simulation tool kit that is easily adapted to different geometries. It is anticipated that this will find use in the generation of tailor-made supports for phasing of challenging data and exploration of novel geometries or data collection modalities.

cond-mat.mtrl-sci↗

arXiv2021

Annealing of focused ion beam damage in gold microcrystals: An in situ Bragg coherent X-ray diffraction imaging study

Focused ion beam (FIB) techniques are commonly used to machine, analyse and image materials at the micro- and nanoscale. However, FIB modifies the integrity of the sample by creating defects that cause lattice distortions. Methods have been developed to reduce FIB-induced strain, however these protocols need to be evaluated for their effectiveness. Here we use non-destructive Bragg coherent X-ray diffraction imaging to study the in situ annealing of FIB-milled gold microcrystals. We simultaneously measure two non-collinear reflections for two different crystals during a single annealing cycle, demonstrating the ability to reliably track the location of multiple Bragg peaks during thermal annealing. The thermal lattice expansion of each crystal is used to calculate the local temperature. This is compared to thermocouple readings, which are shown to be substantially affected by thermal resistance. To evaluate the annealing process, we analyse each reflection by considering facet area evolution, cross-correlation maps of displacement field and binarised morphology, and average strain plots. The crystal's strain and morphology evolve with increasing temperature, which is likely to be caused by the diffusion of gallium in gold below ~280°C and the self-diffusion of gold above ~280°C. The majority of FIB-induced strains are removed by 380-410\degree C, depending on which reflection is being considered. Our observations highlight the importance of measuring multiple reflections to unambiguously interpret material behaviour.

cond-mat.mtrl-sci↗

arXiv2020

Observation of transient and asymptotic driven structural states of tungsten exposed to irradiation

Combining spatially resolved X-ray Laue diffraction with atomic-scale simulations, we observe how ion-irradiated tungsten undergoes a series of non-linear structural transformations with increasing irradiation exposure. Nanoscale defect-induced deformations accumulating above 0.02 displacements per atom (dpa) lead to highly fluctuating strains at ~0.1 dpa, collapsing into a driven quasi-steady structural state above ~1 dpa. The driven asymptotic state is characterized by finely dispersed vacancy defects coexisting with an extended dislocation network, and exhibits positive volumetric swelling due to the creation of new crystallographic planes through self-interstitial coalescence, but negative lattice strain.

cond-mat.mtrl-sci↗

arXiv2020

Characterising Ion-Irradiated FeCr: Hardness, Thermal Diffusivity and Lattice Strain

Ion-irradiated FeCr alloys are useful for understanding and predicting neutron-damage in the structural steels of future nuclear reactors. Previous studies have largely focused on the structure of irradiation-induced defects, probed by transmission electron microscopy (TEM), as well as changes in mechanical properties. Across these studies, a wide range of irradiation conditions has been employed on samples with different processing histories, which complicates the analysis of the relationship between defect structures and material properties. Furthermore, key properties, such as irradiation-induced changes in thermal transport and lattice strain, are little explored. Here we present a systematic study of Fe3Cr, Fe5Cr and Fe10Cr binary alloys implanted with 20 MeV Fe$^{3+}$ ions to nominal doses of 0.01 dpa and 0.1 dpa at room temperature. Nanoindentation, transient grating spectroscopy (TGS) and X-ray micro-beam Laue diffraction were used to study the changes in hardness, thermal diffusivity and strain in the material as a function of damage and Cr content. Our results suggest that Cr leads to an increased retention of irradiation-induced defects, causing substantial changes in hardness and lattice strain. However, thermal diffusivity varies little with increasing damage and instead degrades significantly with increasing Cr content in the material. We find significant lattice strains even in samples exposed to a nominal displacement damage of 0.01 dpa. The defect density predicted from the lattice strain measurements is significantly higher than that observed in previous TEM studies, suggesting that TEM may not fully capture the irradiation-induced defect population.

cond-mat.mtrl-sci↗

arXiv2019

Nano-scale imaging of the full strain tensor of specific dislocations extracted from a bulk sample

Lattice defects play a key role in determining the properties of crystalline materials. Probing the 3D lattice strains that govern their interactions remains a challenge. Bragg Coherent Diffraction Imaging (BCDI) allows strain to be measured with nano-scale 3D resolution. However, it is currently limited to materials that form micro-crystals. Here we introduce a new technique that allows the manufacture of BCDI samples from bulk materials. Using tungsten as an example, we show that focussed ion beam (FIB) machining can be used to extract, from macroscopic crystals, micron-sized BCDI samples containing specific pre-selected defects. To interpret the experimental data, we develop a new displacement-gradient-based analysis for multi-reflection BCDI. This allows accurate recovery of the full lattice strain tensor from samples containing multiple dislocations. These new capabilities open the door to BCDI as a microscopy tool for studying complex real-world materials.

cond-mat.mtrl-sci↗

arXiv2016

Coherent X-ray measurements of ion-implantation-induced lattice strains in nano-crystals

Focussed Ion Beam (FIB) milling is a mainstay of nano-scale machining. By manipulating a tightly focussed beam of energetic ions, often gallium (Ga+), FIB can sculpt nanostructures via localised sputtering. This ability to cut solid matter on the nano-scale has revolutionised sample preparation across the life-, earth- and materials sciences. For example FIB is central to microchip prototyping, 3D material analysis, targeted electron microscopy sample extraction and the nanotechnology behind size-dependent material properties. Despite its widespread usage, detailed understanding of the functional consequences of FIB-induced structural damage, intrinsic to the technique, remains elusive. Here, we present nano-scale measurements of three-dimensional, FIB-induced lattice strains, probed using Bragg Coherent X-ray Diffraction Imaging (BCDI). We observe that even low gallium ion doses, typical of FIB imaging, cause substantial lattice distortions. At higher doses, extended self-organised defect structures appear, giving rise to stresses far in excess of the bulk yield limit. Combined with detailed numerical calculations, these observations provide fundamental insight into the nature of the damage created and the structural instabilities that lead to a surprisingly inhomogeneous morphology.

cond-mat.mtrl-sci↗