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Nicola Marzari

Publications and source records attributed to Nicola Marzari.

At least 181 records · Page 10Linked to original sources

Bayesian Neural Networks at Finite Temperature

We recapitulate the Bayesian formulation of neural network based classifiers and show that, while sampling from the posterior does indeed lead to better generalisation than is obtained by standard optimisation of the cost function, even better performance can in general be achieved by sampling finite temperature ($T$) distributions derived from the posterior. Taking the example of two different deep (3 hidden layers) classifiers for MNIST data, we find quite different $T$ values to be appropriate in each case. In particular, for a typical neural network classifier a clear minimum of the test error is observed at $T>0$. This suggests an early stopping criterion for full batch simulated annealing: cool until the average validation error starts to increase, then revert to the parameters with the lowest validation error. As $T$ is increased classifiers transition from accurate classifiers to classifiers that have higher training error than assigning equal probability to each class. Efficient studies of these temperature-induced effects are enabled using a replica-exchange Hamiltonian Monte Carlo simulation technique. Finally, we show how thermodynamic integration can be used to perform model selection for deep neural networks. Similar to the Laplace approximation, this approach assumes that the posterior is dominated by a single mode. Crucially, however, no assumption is made about the shape of that mode and it is not required to precisely compute and invert the Hessian.

stat.ML↗

Band alignment at semiconductor-water interfaces using explicit and implicit descriptions for liquid water

In this work we study and contrast implicit solvation models against explicit atomistic, quantum mechanical models in the description of the band alignment of semiconductors in aqueous environment, using simulations based on density functional theory. We find consistent results for both methods for 9 different terminations across 6 different materials whenever the first solvation shell is treated explicitly, quantum mechanically. Interestingly this first layer of explicit water is more relevant when water is adsorbed but not dissociated, hinting at the importance of saturating the surface with quantum mechanical bonds. Furthermore, we provide absolute alignments by determining the position of the averaged electrostatic reference potential in the bulk region of explicit and implicit water with respect to vacuum. It is found that the absolute level alignments in explicit and implicit simulations agree within $\sim 0.1-0.2$ V if the implicit potential is assumed to lie 0.33 V below the vacuum reference level. By studying the interface between implicit and explicit water we are able to trace back the origin of this offset to the absence of a water surface dipole in the implicit model, as well as a small additional inherent polarization across the implicit-explicit interface.

cond-mat.mtrl-sci↗

Self-consistent site-dependent DFT+$U$ study of stoichiometric and defective SrMnO$_3$

We propose a self-consistent site-dependent Hubbard $U$ approach for DFT+$U$ calculations of defects in complex transition-metal oxides, using Hubbard parameters computed via linear-response theory. The formation of a defect locally perturbs the chemical environment of Hubbard sites in its vicinity, resulting in different Hubbard $U$ parameters for different sites. Using oxygen vacancies in SrMnO$_3$ as a model system, we investigate the dependence of $U$ on the chemical environment and study its influence on the structural, electronic, and magnetic properties of defective bulk and strained thin-film structures. Our results show that a self-consistent $U$ improves the description of stoichiometric bulk SrMnO$_3$ with respect to GGA or GGA+$U$ calculations using an empirical $U$. For defective systems, $U$ changes as a function of the distance of the Hubbard site from the defect, its oxidation state and the magnetic phase of the bulk structure. Taking into account this dependence, in turn, affects the computed defect formation energies and the predicted strain- and/or defect-induced magnetic phase transitions, especially when occupied localized states appear in the band gap of the material upon defect creation.

cond-mat.mtrl-sci↗

Energetics and cathode voltages of LiMPO$_4$ olivines (M = Fe, Mn) from extended Hubbard functionals

Transition-metal compounds pose serious challenges to first-principles calculations based on density-functional theory (DFT), due to the inability of most approximate exchange-correlation functionals to capture the localization of valence electrons on their $d$ states, essential for a predictive modeling of their properties. In this work we focus on two representatives of a well known family of cathode materials for Li-ion batteries, namely the orthorhombic LiMPO$_4$ olivines (M = Fe, Mn). We show that extended Hubbard functionals with on-site ($U$) and inter-site ($V$) interactions (so called DFT+U+V) can predict the electronic structure of the mixed-valence phases, the formation energy of the materials with intermediate Li contents, and the overall average voltage of the battery with remarkable accuracy. We find, in particular, that the inclusion of inter-site interactions in the corrective Hamiltonian improves considerably the prediction of thermodynamic quantities when electronic localization occurs in the presence of significant interatomic hybridization (as is the case for the Mn compound), and that the self-consistent evaluation of the effective interaction parameters as material- and ground-state-dependent quantities allows the prediction of energy differences between different phases and concentrations.

cond-mat.mtrl-sci↗

Determination of conduction and valence band electronic structure of LaTiOxNy thin film

The nitrogen substitution into the oxygen sites of several oxide materials leads to a reduction of the band gap to the visible light energy range, which makes these oxynitride semiconductors potential photocatalysts for efficient solar water splitting. Oxynitrides typically show a different crystal structure compare to the pristine oxide material. Since the band gap is correlated to both the chemical composition and the crystal structure, it is not trivial to distinguish what modifications of the electronic structure induced by the nitrogen substitution are related to compositional and/or structural effects. Here, X-ray emission and absorption spectroscopy is used to investigate the electronic structures of orthorhombic perovskite LaTiOxNy thin films in comparison with films of the pristine oxide LaTiOx with similar orthorhombic structure and cationic oxidation state. Experiment and theory show the expected upward shift in energy of the valence band maximum that reduces the band gap as a consequence of the nitrogen incorporation. But this study also shows that the conduction band minimum, typically considered almost unaffected by the nitrogen substitution, undergoes a significant downward shift in energy. For a rational design of oxynitride photocatalysts the observed changes of both the unoccupied and occupied electronic states have to be taken into account to justify the total band gap narrowing induced by the nitrogen incorporation.

cond-mat.mtrl-sci↗

Solvent-aware Interfaces in Continuum Solvation

Continuum models to handle solvent and electrolyte effects in an effective way have a long tradition in quantum-chemistry simulations and are nowadays also being introduced in computational condensed-matter and materials simulations. A key ingredient of continuum models is the choice of the solute cavity, i.e. the definition of the sharp or smooth boundary between the regions of space occupied by the quantum-mechanical (QM) system and the continuum embedding environment. Although most of the solute-based approaches developed lead to models with comparable and high accuracy when applied to small organic molecules, they can introduce significant artifacts when complex systems are considered. As an example, condensed-matter simulations often deal with supports that present open structures. Similarly, unphysical pockets of continuum solvent may appear in systems featuring multiple molecular components. Here, we introduce a solvent-aware approach to eliminate the unphysical effects where regions of space smaller than the size of a single solvent molecule could still be filled with a continuum environment. We do this by defining a smoothly varying solute cavity that overcomes several of the limitations of straightforward solute-based definitions. This new approach applies to any smooth local definition of the continuum interface, being it based on the electronic density or the atomic positions of the QM system. It produces boundaries that are continuously differentiable with respect to the QM degrees of freedom, leading to accurate forces and/or Kohn-Sham potentials. Benchmarks on semiconductor substrates and on explicit water substrates confirm the flexibility and the accuracy of the approach and provide a general set of parameters for condensed-matter systems featuring open structures and/or explicit liquid components.

physics.chem-ph↗

Enhanced electron-phonon interaction in multi-valley materials

Through a combined theoretical and experimental effort, we uncover a yet unidentified mechanism that strengthens considerably electron-phonon coupling in materials where electron accumulation leads to population of multiple valleys. Taking atomically-thin transition-metal dichalcogenides as prototypical examples, we establish that the mechanism results from a phonon-induced out-of-phase energy shift of the different valleys, which causes inter-valley charge transfer and reduces the effectiveness of electrostatic screening, thus enhancing electron-phonon interactions. The effect is physically robust, it can play a role in many materials and phenomena, as we illustrate by discussing experimental evidence for its relevance in the occurrence of superconductivity. (short abstract due to size limitations - full abstract in the manuscript)

cond-mat.mes-hall↗

Unified theory of thermal transport in crystals and disordered solids

Crystals and glasses exhibit fundamentally different heat conduction mechanisms: the periodicity of crystals allows for the excitation of propagating vibrational waves that carry heat, as first discussed by Peierls; in glasses, the lack of periodicity breaks Peierls' picture and heat is mainly carried by the coupling of vibrational modes, often described by a harmonic theory introduced by Allen and Feldman. Anharmonicity or disorder are thus the limiting factors for thermal conductivity in crystals or glasses; hitherto, no transport equation has been able to account for both. Here, we derive such equation, resulting in a thermal conductivity that reduces to the Peierls and Allen-Feldman limits, respectively, in anharmonic-and-ordered or harmonic-and-disordered solids, while also covering the intermediate regimes where both effects are relevant. This approach also solves the long-standing problem of accurately predicting the thermal properties of crystals with ultralow or glass-like thermal conductivity, as we show with an application to a thermoelectric material representative of this class.

cond-mat.mtrl-sci↗

Precision and efficiency in solid-state pseudopotential calculations

Despite the enormous success and popularity of density-functional theory, systematic verification and validation studies are still limited in number and scope. Here, we propose a protocol to test publicly available pseudopotential libraries, based on several independent criteria including verification against all-electron equations of state and plane-wave convergence tests for phonon frequencies, band structure, cohesive energy and pressure. Adopting these criteria we obtain curated pseudopotential libraries (named SSSP or standard solid-state pseudopotential libraries), that we target for high-throughput materials screening ("SSSP efficiency") and high-precision materials modelling ("SSSP precision"). This latter scores highest among open-source pseudopotential libraries available in the $Δ$-factor test of equations of states of elemental solids.

cond-mat.mtrl-sci↗

Mobility of 2D materials from first principles in an accurate and automated framework

We present a first-principles approach to compute the transport properties of 2D materials in an accurate and automated framework. We use density-functional perturbation theory in the appropriate bidimensional setup with open-boundary conditions in the third direction. The materials are charged by field effect via planar counter-charges. In this approach, we obtain electron-phonon matrix elements in which dimensionality and doping effects are inherently accounted for, without the need for post-processing corrections. This treatment highlights some unexpected consequences, such as an increase of electron-phonon coupling with doping in transition-metal dichalcogenides.We use symmetries extensively and identify pockets of relevant electronic states to minimize the number of electron-phonon interactions to compute; the integrodifferential Boltzmann transport equation is then linearized and solved beyond the relaxation-time approximation. We apply the entire protocol to a set of much studied materials with diverse electronic and vibrational band structures: electron-doped MoS2, WS2, WSe2, phosphorene, arsenene, and hole-doped phosphorene. Among these, hole-doped phosphorene is found to have the highest mobility, with a room temperature value around 600 cm^2/(Vs). Last, we identify the factors that affect most phonon-limited mobilities, such as the number and the anisotropy of electron and hole pockets, to provide a broader understanding of the driving forces behind high mobilities in two-dimensional materials.

cond-mat.mtrl-sci↗

Continuum models of the electrochemical diffuse layer in electronic-structure calculations

Continuum electrolyte models represent a practical tool to account for the presence of the diffuse layer at electrochemical interfaces. However, despite the increasing popularity of these in the field of materials science it remains unclear which features are necessary in order to accurately describe interface-related observables such as the differential capacitance (DC) of metal electrode surfaces. We present here a critical comparison of continuum diffuse-layer models that can be coupled to an atomistic first-principles description of the charged metal surface in order to account for the electrolyte screening at electrified interfaces. By comparing computed DC values for the prototypical Ag(100) surface in an aqueous solution to experimental data we validate the accuracy of the models considered. Results suggest that a size-modified Poisson-Boltzmann description of the electrolyte solution is sufficient to qualitatively reproduce the main experimental trends. Our findings also highlight the large effect that the dielectric cavity parameterization has on the computed DC values.

physics.comp-ph↗

Koopmans-compliant functionals and potentials and their application to the GW100 test-set

Koopmans-compliant (KC) functionals have been shown to provide accurate spectral properties through a generalized condition of piece-wise linearity of the total energy as a function of the fractional addition/removal of an electron to/from any orbital. We analyze the performance of different KC functionals on the GW100 test-set, comparing the ionization potentials (as opposite of the energy of the highest occupied orbital) of these 100 molecules to those obtained from CCSD(T) total energy differences, and experimental results, finding excellent agreement with a mean absolute error of 0.20 eV for the KIPZ functional, that is state-of-the-art for both DFT-based calculations and many-body perturbation theory. We highlight similarities and differences between KC functionals and other electronic-structure approaches, such as dielectric-dependent hybrid functionals and G$_0$W$_0$, both from a theoretical and from a practical point of view, arguing that Koopmans-compliant potentials can be considered as a local and orbital-dependent counterpart to the electronic GW self-energy, albeit already including approximate vertex corrections.

physics.comp-ph↗

Hubbard parameters from density-functional perturbation theory

We present a transparent and computationally efficient approach for the first-principles calculation of Hubbard parameters from linear-response theory. This approach is based on density-functional perturbation theory and the use of monochromatic perturbations. In addition to delivering much improved efficiency, the present approach makes it straightforward to calculate automatically these Hubbard parameters for any given system, with tight numerical control on convergence and precision. The effectiveness of the method is showcased in three case studies - Cu$_2$O, NiO, and LiCoO$_2$ - and by the direct comparison with finite differences in supercell calculations.

cond-mat.str-el↗

Nanoscale Surface Dynamics of Bi$_2$Te$_3$(111): Observation of a Prominent Surface Acoustic Wave and the Role of van der Waals Interactions

We present a combined experimental and theoretical study of the surface vibrational modes of the topological insulator Bi$_2$Te$_3$. Using high-resolution helium-3 spin-echo spectroscopy we are able to resolve the acoustic phonon modes of Bi$_2$Te$_3$(111). The low energy region of the lattice vibrations is mainly dominated by the Rayleigh mode which has been claimed to be absent in previous experimental studies. The appearance of the Rayleigh mode is consistent with previous bulk lattice dynamics studies as well as theoretical predictions of the surface phonon modes. Density functional perturbation theory calculations including van der Waals corrections are in excellent agreement with the experimental data. Comparison of the experimental results with theoretically obtained values for films with a thickness of several layers further demonstrate, that for an accurate theoretical description of three-dimensional topological insulators with their layered structure the inclusion of van der Waals corrections is essential. The presence of a prominent surface acoustic wave and the contribution of van der Waals bonding to the lattice dynamics may hold important implications for the thermoelectric properties of thin-film and nanoscale devices.

cond-mat.mtrl-sci↗

Modeling lithium-ion solid-state electrolytes with a pinball model

We introduce a simple and efficient model to describe the potential energy surface of lithium diffusing in a solid-state ionic conductor. First, we assume that the Li atoms are fully ionized and we neglect the weak dependence of the electronic valence charge density on the instantaneous position of the Li ions. Second, we freeze the atoms of the host lattice in their equilibrium positions; consequently, also the valence charge density is frozen. We thus obtain a computational setup (the "pinball model") for which extremely inexpensive molecular dynamics simulation can be performed. To assess the accuracy of the model, we contrast it with full first-principles molecular dynamics simulations performed either with a free or frozen host lattice; in this latter case, the charge density still readjusts itself self-consistently to the actual positions of the diffusing Li ions. We show that the pinball model is able to reproduce accurately the static and dynamic properties of the diffusing Li ions - including forces, power spectra, and diffusion coefficients - when compared to the self-consistent frozen-host lattice simulations. The frozen-lattice approximation itself is often accurate enough, and certainly a good proxy in most materials. These observations unlock efficient ways to simulating the diffusion of lithium in the solid state, and provide additional physical insight into the respective roles of charge-density rearrangements or lattice vibrations in affecting lithium diffusion.

cond-mat.mtrl-sci↗

Vibrational and thermoelastic properties of bcc iron from selected EAM potentials

A comprehensive, critical study of the vibrational, thermodynamic and thermoelastic properties of bcc iron is presented, using well established semi-empirical embedded-atom method potentials available in the literature. Classical molecular dynamics simulations are used to address temperature effects, where dynamical matrices are constructed as a time average of the second moment of the atomic displacements. The $C_{11}, C_{44}, C'$ elastic constants are then obtained from the sound velocities along high symmetry directions in reciprocal space. Results are compared to ultrasonic measurements and highlight the limitations of the potentials considered here in describing thermoelastic properties.

cond-mat.mtrl-sci↗

Halogen-Bond Driven Self-Assembly of Perfluorocarbon Monolayers

The self-assembly of a single layer of organic molecules on a substrate is a powerful strategy to modify surfaces and interfacial properties. The detailed interplay of molecule-to-substrate and molecule-molecule interactions are crucial for the preparation of stable and uniform monomolecular coatings. Thiolates, silanes, phosphonates and carboxylates are widely used head-groups to link organic molecules to specific surfaces study we show that self-assembly of stable and highly compact monolayers of perfluorocarbons. Remarkably, the lowest ever reported surface energy of 2.6 mJ m-2 was measured for a perfluorododecyl iodide monolayer on a silicon nitride substrate. As a convenient, flexible and simple method, the self-assembly of halogen-bond driven perfluorocarbon monolayers is compatible with several applications, ranging from biosensing to electronics and microfluidics. Compared to other methods used to functionalise surfaces and interfaces, our procedure offers the unique advantage to work with extremely inert perfluorinated solvents. We demonstrate that surfaces commonly unstable in contact with many common organic solvents, such as organic-inorganic perovskites, can be functionalized via halogen bonding.

physics.chem-ph↗

Prediction of a large-gap and switchable Kane-Mele quantum spin Hall insulator

Fundamental research and technological applications of topological insulators are hindered by the rarity of materials exhibiting a robust topologically non-trivial phase, especially in two dimensions. Here, by means of extensive first-principles calculations, we propose a novel quantum spin Hall insulator with a sizeable band gap of $\sim$0.5 eV that is a monolayer of Jacutingaite, a naturally occurring layered mineral first discovered in 2008 in Brazil and recently synthesised. This system realises the paradigmatic Kane-Mele model for quantum spin Hall insulators in a potentially exfoliable two-dimensional monolayer, with helical edge states that are robust and that can be manipulated exploiting a unique strong interplay between spin-orbit coupling, crystal-symmetry breaking and dielectric response.

cond-mat.mtrl-sci↗